RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 Q6ZVQ6 151 aa12.72□□□□□ -0.37
VPS28-209ENST00000528142 PKD1P98161 4303 aa12.71□□□□□ -0.37
VPS28-209ENST00000528142 ATP5EP2Q5VTU8 51 aa12.71□□□□□ -0.38
VPS28-209ENST00000528142 PSORS1C2Q9UIG4 136 aa12.71□□□□□ -0.38
VPS28-209ENST00000528142 A0A1W2PNM2 257 aa12.69□□□□□ -0.38
VPS28-209ENST00000528142 FAM30AQ9NZY2 134 aa12.69□□□□□ -0.38
VPS28-209ENST00000528142 IGLV8-61A0A075B6I0 122 aa12.68□□□□□ -0.38
VPS28-209ENST00000528142 F8WEM9 126 aa12.67□□□□□ -0.38
VPS28-209ENST00000528142 Q8NBF4 154 aa12.65□□□□□ -0.38
VPS28-209ENST00000528142 DNAH5Q8TE73 4624 aa12.65□□□□□ -0.39
VPS28-209ENST00000528142 A0A1B0GW54 56 aa12.65□□□□□ -0.39
VPS28-209ENST00000528142 KRTAP10-1P60331 282 aa12.64□□□□□ -0.39
VPS28-209ENST00000528142 Q6ZSA8 131 aa12.64□□□□□ -0.39
VPS28-209ENST00000528142 CIRBP-AS1Q8TBR5 109 aa12.63□□□□□ -0.39
VPS28-209ENST00000528142 SPRR4Q96PI1 79 aa12.63□□□□□ -0.39
VPS28-209ENST00000528142 IGFL1Q6UW32 110 aa12.62□□□□□ -0.39
VPS28-209ENST00000528142 HAMPP81172 84 aa12.62□□□□□ -0.39
VPS28-209ENST00000528142 FAM236AA0A1B0GUQ0 79 aa12.61□□□□□ -0.39
VPS28-209ENST00000528142 FAM236BA0A1B0GV22 79 aa12.61□□□□□ -0.39
VPS28-209ENST00000528142 ZNF861PO60384 105 aa12.6□□□□□ -0.39
VPS28-209ENST00000528142 A0A0G2JQZ4 141 aa12.59□□□□□ -0.39
VPS28-209ENST00000528142 CXCL6P80162 114 aa12.59□□□□□ -0.39
VPS28-209ENST00000528142 ANAPC13Q9BS18 74 aa12.58□□□□□ -0.4
VPS28-209ENST00000528142 A0A087WVE0 104 aa12.58□□□□□ -0.4
VPS28-209ENST00000528142 CRYGAP11844 174 aa12.58□□□□□ -0.4
VPS28-209ENST00000528142 HIST1H4AP62805 103 aaKnown RBP12.58□□□□□ -0.4
VPS28-209ENST00000528142 NREPQ16612 68 aa12.58□□□□□ -0.4
VPS28-209ENST00000528142 SCXQ7RTU7 201 aa12.58□□□□□ -0.4
VPS28-209ENST00000528142 DNAH8Q96JB1 4490 aa12.56□□□□□ -0.4
VPS28-209ENST00000528142 LINC00483Q53H64 154 aa12.56□□□□□ -0.4
VPS28-209ENST00000528142 RYR3Q15413 4870 aa12.55□□□□□ -0.4
VPS28-209ENST00000528142 IGLV7-43P04211 117 aa12.54□□□□□ -0.4
VPS28-209ENST00000528142 A0A1B0GVY2 172 aa12.53□□□□□ -0.4
VPS28-209ENST00000528142 ZNF706Q9Y5V0 76 aaPredicted RBP12.53□□□□□ -0.4
VPS28-209ENST00000528142 LINC00336Q6ZUF6 198 aa12.52□□□□□ -0.41
VPS28-209ENST00000528142 PKHD1P08F94 4074 aa12.5□□□□□ -0.41
VPS28-209ENST00000528142 SRRM2Q9UQ35 2752 aaKnown RBP12.49□□□□□ -0.41
VPS28-209ENST00000528142 BPY2O14599 106 aa12.46□□□□□ -0.42
VPS28-209ENST00000528142 IGLV9-49A0A0B4J1Y8 123 aa12.44□□□□□ -0.42
VPS28-209ENST00000528142 A0A087WSZ3 146 aa12.43□□□□□ -0.42
VPS28-209ENST00000528142 ATOX1O00244 68 aa12.43□□□□□ -0.42
VPS28-209ENST00000528142 ANAPC11Q9NYG5 84 aa12.42□□□□□ -0.42
VPS28-209ENST00000528142 RPL37AP61513 92 aaKnown RBP12.41□□□□□ -0.42
VPS28-209ENST00000528142 C9orf153Q5TBE3 101 aa12.4□□□□□ -0.42
VPS28-209ENST00000528142 IGKV4-1P06312 121 aa12.39□□□□□ -0.43
VPS28-209ENST00000528142 Q8N9L7 120 aa12.39□□□□□ -0.43
VPS28-209ENST00000528142 DYNC1H1Q14204 4646 aaKnown RBP12.39□□□□□ -0.43
VPS28-209ENST00000528142 LRP1BQ9NZR2 4599 aa12.39□□□□□ -0.43
VPS28-209ENST00000528142 CCDC179H3BU77 68 aa12.36□□□□□ -0.43
VPS28-209ENST00000528142 DSCR10P59022 87 aa12.35□□□□□ -0.43
VPS28-209ENST00000528142 MOBPQ13875 183 aa12.35□□□□□ -0.43
VPS28-209ENST00000528142 COX7CP15954 63 aa12.3□□□□□ -0.44
VPS28-209ENST00000528142 DEFB116Q30KQ4 102 aa12.29□□□□□ -0.44
VPS28-209ENST00000528142 SERP2Q8N6R1 65 aa12.29□□□□□ -0.44
VPS28-209ENST00000528142 LINC00472Q9H8W2 130 aa12.29□□□□□ -0.44
VPS28-209ENST00000528142 K7EQZ3 153 aa12.27□□□□□ -0.45
VPS28-209ENST00000528142 UQCRQO14949 82 aa12.27□□□□□ -0.45
VPS28-209ENST00000528142 HRCT1Q6UXD1 115 aa12.25□□□□□ -0.45
VPS28-209ENST00000528142 APOBP04114 4563 aaKnown RBP12.24□□□□□ -0.45
VPS28-209ENST00000528142 SSBP3-AS1Q7Z2R9 100 aa12.21□□□□□ -0.45
VPS28-209ENST00000528142 FAM229BQ4G0N7 80 aa12.2□□□□□ -0.46
VPS28-209ENST00000528142 SMIM20Q8N5G0 67 aa12.2□□□□□ -0.46
VPS28-209ENST00000528142 A0A087X002 238 aa12.19□□□□□ -0.46
VPS28-209ENST00000528142 KRTAP1-4P0C5Y4 121 aa12.19□□□□□ -0.46
VPS28-209ENST00000528142 Q96NJ1 140 aa12.19□□□□□ -0.46
VPS28-209ENST00000528142 TRAV7A0A075B6U4 112 aa12.18□□□□□ -0.46
VPS28-209ENST00000528142 SS18L2Q9UHA2 77 aa12.18□□□□□ -0.46
VPS28-209ENST00000528142 KRTAP13-2Q52LG2 175 aa12.17□□□□□ -0.46
VPS28-209ENST00000528142 A8MWP4 228 aa12.16□□□□□ -0.46
VPS28-209ENST00000528142 CD164Q04900 197 aa12.16□□□□□ -0.46
VPS28-209ENST00000528142 J3KT08 172 aa12.15□□□□□ -0.46
VPS28-209ENST00000528142 PRR15Q8IV56 129 aa12.14□□□□□ -0.47
VPS28-209ENST00000528142 HCG22E2RYF7 251 aa12.12□□□□□ -0.47
VPS28-209ENST00000528142 SMR3BP02814 79 aaPredicted RBP12.12□□□□□ -0.47
VPS28-209ENST00000528142 SPINK6Q6UWN8 80 aa12.11□□□□□ -0.47
VPS28-209ENST00000528142 VPS13BQ7Z7G8 4022 aa12.11□□□□□ -0.47
VPS28-209ENST00000528142 OCR1Q9BZK8 76 aa12.11□□□□□ -0.47
VPS28-209ENST00000528142 EPPK1P58107 5090 aaKnown RBP12.11□□□□□ -0.47
VPS28-209ENST00000528142 KRTAP10-4P60372 401 aaPredicted RBP12.07□□□□□ -0.48
VPS28-209ENST00000528142 KRTAP29-1A8MX34 341 aaPredicted RBP12.06□□□□□ -0.48
VPS28-209ENST00000528142 PLA2G1BP04054 148 aaKnown RBP12.06□□□□□ -0.48
VPS28-209ENST00000528142 CYSTM1Q9H1C7 97 aa12.06□□□□□ -0.48
VPS28-209ENST00000528142 FAT1Q14517 4588 aa12.06□□□□□ -0.48
VPS28-209ENST00000528142 WFDC13Q8IUB5 93 aa12.04□□□□□ -0.48
VPS28-209ENST00000528142 NDUFB1O75438 58 aa12.03□□□□□ -0.48
VPS28-209ENST00000528142 C20orf197Q8N268 126 aa12.02□□□□□ -0.48
VPS28-209ENST00000528142 HSPG2P98160 4391 aa12.02□□□□□ -0.49
VPS28-209ENST00000528142 ASB16-AS1Q495Z4 193 aa12.02□□□□□ -0.49
VPS28-209ENST00000528142 KRTAP17-1Q9BYP8 105 aa12.02□□□□□ -0.49
VPS28-209ENST00000528142 MMP24-AS1A0A0U1RRL7 71 aa12□□□□□ -0.49
VPS28-209ENST00000528142 CASC2Q6XLA1 102 aa12□□□□□ -0.49
VPS28-209ENST00000528142 Q5XG85 94 aa11.99□□□□□ -0.49
VPS28-209ENST00000528142 A0A1B0GVX0 72 aa11.96□□□□□ -0.49
VPS28-209ENST00000528142 KLKP1Q107X0 134 aa11.96□□□□□ -0.49
VPS28-209ENST00000528142 TYMSOSQ8TAI1 123 aa11.96□□□□□ -0.49
VPS28-209ENST00000528142 RYR1P21817 5038 aa11.96□□□□□ -0.5
VPS28-209ENST00000528142 CDK2AP2O75956 126 aa11.95□□□□□ -0.5
VPS28-209ENST00000528142 KIAA1109Q2LD37 5005 aa11.94□□□□□ -0.5
VPS28-209ENST00000528142 TMEM254Q8TBM7 123 aa11.93□□□□□ -0.5
VPS28-209ENST00000528142 C8orf17Q9NRJ1 99 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms