RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PPDPFLQ8WWR9 84 aa11.41□□□□□ -0.58
VPS28-206ENST00000526734 RAB37Q96AX2 223 aa11.39□□□□□ -0.59
VPS28-206ENST00000526734 A0A0B4J2C4 111 aa11.38□□□□□ -0.59
VPS28-206ENST00000526734 Q6JHZ5 121 aa11.38□□□□□ -0.59
VPS28-206ENST00000526734 IGLV8-61A0A075B6I0 122 aa11.36□□□□□ -0.59
VPS28-206ENST00000526734 SNCGO76070 127 aa11.36□□□□□ -0.59
VPS28-206ENST00000526734 CFC1BP0CG36 223 aa11.36□□□□□ -0.59
VPS28-206ENST00000526734 CFC1P0CG37 223 aa11.36□□□□□ -0.59
VPS28-206ENST00000526734 TCL1BO95988 128 aa11.35□□□□□ -0.59
VPS28-206ENST00000526734 C2orf91Q6ZV80 131 aa11.35□□□□□ -0.59
VPS28-206ENST00000526734 TMEM238LA0A1B0GVL6 79 aa11.34□□□□□ -0.59
VPS28-206ENST00000526734 A6NJY4 79 aa11.34□□□□□ -0.59
VPS28-206ENST00000526734 H0YGX0 51 aa11.33□□□□□ -0.6
VPS28-206ENST00000526734 CLEC2BQ92478 149 aa11.33□□□□□ -0.6
VPS28-206ENST00000526734 OCIAD2Q56VL3 154 aa11.32□□□□□ -0.6
VPS28-206ENST00000526734 C1orf195Q5TG92 126 aa11.32□□□□□ -0.6
VPS28-206ENST00000526734 FAT4Q6V0I7 4981 aa11.31□□□□□ -0.6
VPS28-206ENST00000526734 A0A0G2JQZ4 141 aa11.31□□□□□ -0.6
VPS28-206ENST00000526734 CEND1Q8N111 149 aa11.31□□□□□ -0.6
VPS28-206ENST00000526734 SNHG12Q9BXW3 62 aa11.3□□□□□ -0.6
VPS28-206ENST00000526734 LCE2AQ5TA79 106 aaPredicted RBP11.28□□□□□ -0.6
VPS28-206ENST00000526734 GHRHP01286 108 aa11.27□□□□□ -0.61
VPS28-206ENST00000526734 PRO1854Q9UHT4 67 aa11.27□□□□□ -0.61
VPS28-206ENST00000526734 A0A1B0GX51 115 aa11.26□□□□□ -0.61
VPS28-206ENST00000526734 C9orf92A6NGG3 77 aa11.26□□□□□ -0.61
VPS28-206ENST00000526734 IGFL1Q6UW32 110 aa11.26□□□□□ -0.61
VPS28-206ENST00000526734 TRBV7-7A0A0K0K1E9 115 aa11.25□□□□□ -0.61
VPS28-206ENST00000526734 PYY3Q5JQD4 70 aa11.24□□□□□ -0.61
VPS28-206ENST00000526734 FXYD2P54710 66 aa11.21□□□□□ -0.61
VPS28-206ENST00000526734 HSD52Q0P140 79 aa11.21□□□□□ -0.61
VPS28-206ENST00000526734 KRTAP4-1Q9BYQ7 146 aa11.21□□□□□ -0.61
VPS28-206ENST00000526734 FAM218AQ96MZ4 157 aa11.19□□□□□ -0.62
VPS28-206ENST00000526734 H3BUT2 72 aa11.16□□□□□ -0.62
VPS28-206ENST00000526734 NDUFV3P56181 108 aaKnown RBP11.16□□□□□ -0.62
VPS28-206ENST00000526734 PCOTHQ58A44 107 aa11.16□□□□□ -0.62
VPS28-206ENST00000526734 Q6Q795 121 aa11.16□□□□□ -0.62
VPS28-206ENST00000526734 SS18L2Q9UHA2 77 aa11.15□□□□□ -0.62
VPS28-206ENST00000526734 TRIAP1O43715 76 aa11.14□□□□□ -0.63
VPS28-206ENST00000526734 UQCR10Q9UDW1 63 aa11.14□□□□□ -0.63
VPS28-206ENST00000526734 TMA7Q9Y2S6 64 aaKnown RBP11.14□□□□□ -0.63
VPS28-206ENST00000526734 H3BQ85 93 aa11.12□□□□□ -0.63
VPS28-206ENST00000526734 RPL37P61927 97 aaKnown RBP11.12□□□□□ -0.63
VPS28-206ENST00000526734 TEN1Q86WV5 123 aa11.12□□□□□ -0.63
VPS28-206ENST00000526734 LST1O00453 97 aa11.11□□□□□ -0.63
VPS28-206ENST00000526734 DNAL4O96015 105 aa11.1□□□□□ -0.63
VPS28-206ENST00000526734 COX6CP09669 75 aa11.1□□□□□ -0.63
VPS28-206ENST00000526734 FABP2P12104 132 aa11.1□□□□□ -0.63
VPS28-206ENST00000526734 H3BMG7 143 aa11.09□□□□□ -0.63
VPS28-206ENST00000526734 PSMB2P49721 201 aa11.09□□□□□ -0.63
VPS28-206ENST00000526734 K7ERJ3 54 aa11.05□□□□□ -0.64
VPS28-206ENST00000526734 ORMDL1Q9P0S3 153 aa11.05□□□□□ -0.64
VPS28-206ENST00000526734 TMEM256-PLSCR3K7ERE1 68 aa11.01□□□□□ -0.65
VPS28-206ENST00000526734 A0A087WSZ3 146 aa11□□□□□ -0.65
VPS28-206ENST00000526734 OBSCN-AS1Q96MR7 158 aa10.98□□□□□ -0.65
VPS28-206ENST00000526734 Q75L30 129 aa10.97□□□□□ -0.65
VPS28-206ENST00000526734 TRACP01848 142 aa10.96□□□□□ -0.65
VPS28-206ENST00000526734 ANKRD29Q8N6D5 301 aa10.96□□□□□ -0.65
VPS28-206ENST00000526734 TRBV7-4A0A0J9YYF1 115 aa10.95□□□□□ -0.66
VPS28-206ENST00000526734 A0A1W2PNM2 257 aa10.94□□□□□ -0.66
VPS28-206ENST00000526734 UBE2V1Q13404 147 aa10.94□□□□□ -0.66
VPS28-206ENST00000526734 KRTAP19-2Q3LHN2 52 aa10.94□□□□□ -0.66
VPS28-206ENST00000526734 LCE2CQ5TA81 110 aa10.94□□□□□ -0.66
VPS28-206ENST00000526734 KRTAP9-2Q9BYQ4 174 aa10.93□□□□□ -0.66
VPS28-206ENST00000526734 SCGB1C2P0DMR2 95 aa10.92□□□□□ -0.66
VPS28-206ENST00000526734 ATP11AUNQ6ZP68 121 aa10.92□□□□□ -0.66
VPS28-206ENST00000526734 Q96NJ1 140 aa10.9□□□□□ -0.66
VPS28-206ENST00000526734 M0R143 59 aa10.89□□□□□ -0.67
VPS28-206ENST00000526734 CCKP06307 115 aa10.86□□□□□ -0.67
VPS28-206ENST00000526734 C20orf166-AS1Q96NR2 134 aa10.86□□□□□ -0.67
VPS28-206ENST00000526734 SIGMAR1Q99720 223 aa10.86□□□□□ -0.67
VPS28-206ENST00000526734 A0A1B0GV72 72 aa10.85□□□□□ -0.67
VPS28-206ENST00000526734 SMIM6P0DI80 62 aa10.85□□□□□ -0.67
VPS28-206ENST00000526734 MT1HP80294 61 aa10.83□□□□□ -0.68
VPS28-206ENST00000526734 A8MUU9 505 aa10.82□□□□□ -0.68
VPS28-206ENST00000526734 C21orf62-AS1Q17RA5 79 aa10.82□□□□□ -0.68
VPS28-206ENST00000526734 IGKV4-1P06312 121 aa10.81□□□□□ -0.68
VPS28-206ENST00000526734 RBM3P98179 157 aaKnown RBP10.81□□□□□ -0.68
VPS28-206ENST00000526734 COX6B2Q6YFQ2 88 aa10.81□□□□□ -0.68
VPS28-206ENST00000526734 DSCR8Q96T75 97 aa10.8□□□□□ -0.68
VPS28-206ENST00000526734 BAALC-AS2P0C853 105 aa10.77□□□□□ -0.69
VPS28-206ENST00000526734 DSCR10P59022 87 aa10.77□□□□□ -0.69
VPS28-206ENST00000526734 LINC00472Q9H8W2 130 aa10.77□□□□□ -0.69
VPS28-206ENST00000526734 LINC00313P59037 77 aa10.76□□□□□ -0.69
VPS28-206ENST00000526734 ATXN8Q156A1 80 aa10.76□□□□□ -0.69
VPS28-206ENST00000526734 VPS25Q9BRG1 176 aa10.74□□□□□ -0.69
VPS28-206ENST00000526734 C9JAW5 83 aa10.73□□□□□ -0.69
VPS28-206ENST00000526734 LYRM7Q5U5X0 104 aa10.73□□□□□ -0.69
VPS28-206ENST00000526734 TSTD3H0UI37 97 aa10.72□□□□□ -0.69
VPS28-206ENST00000526734 JMJD7-PLA2G4BH0Y9G9 81 aa10.71□□□□□ -0.69
VPS28-206ENST00000526734 LCE2DQ5TA82 110 aaPredicted RBP10.7□□□□□ -0.7
VPS28-206ENST00000526734 KRTAP16-1A8MUX0 517 aa10.68□□□□□ -0.7
VPS28-206ENST00000526734 J3KT08 172 aa10.68□□□□□ -0.7
VPS28-206ENST00000526734 A0A1B0GW54 56 aa10.67□□□□□ -0.7
VPS28-206ENST00000526734 C8orf87E5RJ46 101 aa10.67□□□□□ -0.7
VPS28-206ENST00000526734 M0R2T5 61 aa10.67□□□□□ -0.7
VPS28-206ENST00000526734 DEFB116Q30KQ4 102 aa10.67□□□□□ -0.7
VPS28-206ENST00000526734 NAA38Q9BRA0 125 aaKnown RBP10.67□□□□□ -0.7
VPS28-206ENST00000526734 TRBV20-1A0A075B6N2 111 aa10.65□□□□□ -0.7
VPS28-206ENST00000526734 IGHV6-1A0A0B4J1U7 121 aa10.65□□□□□ -0.7
VPS28-206ENST00000526734 PDE6GP18545 87 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms