RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TRBV6-1A0A0K0K1D8 114 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 FAM236AA0A1B0GUQ0 79 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 FAM236BA0A1B0GV22 79 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 E7EUB6 86 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 CCDC179H3BU77 68 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 NDUFB1O75438 58 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 ARL14EPLP0DKL9 152 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 EDDM3BP56851 147 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 RBM3P98179 157 aaKnown RBP1.51□□□□□ -2.17
CD44-223ENST00000526553 INSL4Q14641 139 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 C10orf128Q5T292 105 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 C10orf113Q5VZT2 155 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 SBSPONQ8IVN8 264 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 TMEM141Q96I45 108 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 ABCA13Q86UQ4 5058 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 DNAH6Q9C0G6 4158 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 TRAV13-2A0A0B4J235 113 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 ZNF815PA8K554 130 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 IQCF6A8MYZ5 107 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 F8VRH5 84 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 NUPR1O60356 82 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 SPINK4O60575 86 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 LY6G6CO95867 125 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 RHOHQ15669 191 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 C5orf38Q86SI9 138 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 Q8N8P6 123 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 WFDC9Q8NEX5 89 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 C20orf78Q9BR46 151 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 HILPDAQ9Y5L2 63 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 KMT2AQ03164 3969 aa1.5□□□□□ -2.17
CD44-223ENST00000526553 KIAA1109Q2LD37 5005 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 A0A087WSZ3 146 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 TRBV6-8A0A0A6YYG3 113 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 TRBV27A0A0K0K1C4 114 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 H3BSH0 61 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 M0R135 149 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 ERC2-IT1O76042 136 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 SAA1P0DJI8 122 aaPredicted RBP1.49□□□□□ -2.17
CD44-223ENST00000526553 IAPPP10997 89 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 UBE2D3P61077 147 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 CNBPP62633 177 aaKnown RBP1.49□□□□□ -2.17
CD44-223ENST00000526553 UBE2D2P62837 147 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 BLCAPP62952 87 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 LINC01590Q5TEZ4 76 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 FAM74A4Q5TZK3 123 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 SPANXN1Q5VSR9 72 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 C10orf99Q6UWK7 81 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 ATP11AUNQ6ZP68 121 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 ZNF818PQ6ZRF7 136 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 NABP2Q9BQ15 211 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 LIMD2Q9BT23 127 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 CYP4F30PQ9H0H9 118 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 DPH3P1Q9H4G8 78 aa1.49□□□□□ -2.17
CD44-223ENST00000526553 DYNC1H1Q14204 4646 aaKnown RBP1.49□□□□□ -2.17
CD44-223ENST00000526553 LOC110117498A0A087WWA1 95 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 TMEM30CPA0ZSE6 113 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 OOSP1A8MZH6 123 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 TFF1P04155 84 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 ASB16-AS1Q495Z4 193 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 Q6JHZ5 121 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 HRCT1Q6UXD1 115 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 FAM216BQ8N7L0 139 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 AMELYQ99218 206 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 TTTY10Q9BZA0 68 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 MRPL35Q9NZE8 188 aaKnown RBP1.48□□□□□ -2.17
CD44-223ENST00000526553 TMEM14CQ9P0S9 112 aa1.48□□□□□ -2.17
CD44-223ENST00000526553 PKHD1P08F94 4074 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 TRAV10A0A0B4J240 114 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 RBAKDNA6NC62 111 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 LINC01546A6NGU7 62 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 D6R8Y8 96 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 K7ERJ3 54 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 M0R1W7 72 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 M0R2N4 97 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 NDUFA3O95167 84 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 ANGP03950 147 aaKnown RBP1.47□□□□□ -2.17
CD44-223ENST00000526553 UBE2D1P51668 147 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 FXYD3Q14802 87 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 DEFB136Q30KP8 78 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 ZNF833PQ6ZTB9 187 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 MUSTN1Q8IVN3 82 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 KAAG1Q9UBP8 84 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 LENEPQ9Y5L5 61 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 VPS13DQ5THJ4 4388 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 DNAH17Q9UFH2 4485 aa1.47□□□□□ -2.17
CD44-223ENST00000526553 TRBV7-1A0A0A6YYK4 115 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 TEX49A0A1B0GTD5 131 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 INE1O15225 51 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 IGLV1-51P01701 117 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 CCL3L1P16619 93 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 ZNF137PP52743 207 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 PRCDQ00LT1 54 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 KLKP1Q107X0 134 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 DIAPH2-AS1Q14236 149 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 Q8N814 137 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 GAFA1Q96PS6 74 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 DSCR8Q96T75 97 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 PRR15LQ9BU68 103 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 SMIM2Q9BVW6 85 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 MRPL36Q9P0J6 103 aaKnown RBP1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms