RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PCOTHQ58A44 107 aa6.21□□□□□ -1.42
VCAN-210ENST00000513960 DNAH10OSP0CZ25 163 aa6.2□□□□□ -1.42
VCAN-210ENST00000513960 UBE2AP49459 152 aa6.2□□□□□ -1.42
VCAN-210ENST00000513960 Q1T7F1 81 aa6.2□□□□□ -1.42
VCAN-210ENST00000513960 TENM3Q9P273 2699 aa6.19□□□□□ -1.42
VCAN-210ENST00000513960 NOTCH1P46531 2555 aa6.19□□□□□ -1.42
VCAN-210ENST00000513960 PKD1L1Q8TDX9 2849 aa6.19□□□□□ -1.42
VCAN-210ENST00000513960 CASC2Q6XLA1 102 aa6.19□□□□□ -1.42
VCAN-210ENST00000513960 LINC00588Q9Y4M8 146 aa6.17□□□□□ -1.42
VCAN-210ENST00000513960 REG3GQ6UW15 175 aa6.17□□□□□ -1.42
VCAN-210ENST00000513960 CASC10Q5T4H9 136 aa6.17□□□□□ -1.42
VCAN-210ENST00000513960 MDFIQ99750 246 aa6.17□□□□□ -1.42
VCAN-210ENST00000513960 C4orf48Q5BLP8 95 aa6.16□□□□□ -1.42
VCAN-210ENST00000513960 IGLV1-50A0A075B6I6 118 aa6.16□□□□□ -1.42
VCAN-210ENST00000513960 IGFL1Q6UW32 110 aa6.16□□□□□ -1.42
VCAN-210ENST00000513960 CD164Q04900 197 aa6.14□□□□□ -1.43
VCAN-210ENST00000513960 TLX1NBP0CAT3 122 aa6.14□□□□□ -1.43
VCAN-210ENST00000513960 COL6A5A8TX70 2615 aa6.14□□□□□ -1.43
VCAN-210ENST00000513960 FBN1P35555 2871 aaKnown RBP6.14□□□□□ -1.43
VCAN-210ENST00000513960 Q5VV11 94 aa6.13□□□□□ -1.43
VCAN-210ENST00000513960 SPAG11AQ6PDA7 123 aa6.13□□□□□ -1.43
VCAN-210ENST00000513960 ZCCHC13Q8WW36 166 aaKnown RBP6.13□□□□□ -1.43
VCAN-210ENST00000513960 CDK2AP2O75956 126 aa6.12□□□□□ -1.43
VCAN-210ENST00000513960 LIMD2Q9BT23 127 aa6.12□□□□□ -1.43
VCAN-210ENST00000513960 A0A1B0GW54 56 aa6.12□□□□□ -1.43
VCAN-210ENST00000513960 SPRR4Q96PI1 79 aa6.12□□□□□ -1.43
VCAN-210ENST00000513960 CYP4F30PQ9H0H9 118 aa6.12□□□□□ -1.43
VCAN-210ENST00000513960 PLA2G2DQ9UNK4 145 aa6.11□□□□□ -1.43
VCAN-210ENST00000513960 K7EIL1 84 aa6.11□□□□□ -1.43
VCAN-210ENST00000513960 H3BS24 57 aa6.1□□□□□ -1.43
VCAN-210ENST00000513960 COA5Q86WW8 74 aa6.1□□□□□ -1.43
VCAN-210ENST00000513960 TNP2Q05952 138 aa6.1□□□□□ -1.43
VCAN-210ENST00000513960 C16orf90A8MZG2 172 aa6.09□□□□□ -1.43
VCAN-210ENST00000513960 Q8N9P0 234 aaPredicted RBP6.09□□□□□ -1.43
VCAN-210ENST00000513960 IGLV5-37A0A075B6J1 123 aa6.08□□□□□ -1.44
VCAN-210ENST00000513960 ANK2Q01484 3957 aa6.08□□□□□ -1.44
VCAN-210ENST00000513960 IGLV9-49A0A0B4J1Y8 123 aa6.08□□□□□ -1.44
VCAN-210ENST00000513960 UBE2DNLQ8IWF7 75 aa6.08□□□□□ -1.44
VCAN-210ENST00000513960 NBEAL1Q6ZS30 2694 aa6.07□□□□□ -1.44
VCAN-210ENST00000513960 LCE6AA0A183 80 aa6.07□□□□□ -1.44
VCAN-210ENST00000513960 MGAM2Q2M2H8 2515 aa6.07□□□□□ -1.44
VCAN-210ENST00000513960 KTN1-AS1Q86SY8 53 aa6.06□□□□□ -1.44
VCAN-210ENST00000513960 CHTF8P0CG12 524 aa6.06□□□□□ -1.44
VCAN-210ENST00000513960 KRTAP4-16G5E9R7 235 aaPredicted RBP6.05□□□□□ -1.44
VCAN-210ENST00000513960 SPRR1AP35321 89 aa6.05□□□□□ -1.44
VCAN-210ENST00000513960 PHF5AQ7RTV0 110 aaKnown RBP6.05□□□□□ -1.44
VCAN-210ENST00000513960 RBM12B-AS1Q9P1G2 102 aa6.05□□□□□ -1.44
VCAN-210ENST00000513960 IGHV6-1A0A0B4J1U7 121 aa6.04□□□□□ -1.44
VCAN-210ENST00000513960 CNBPP62633 177 aaKnown RBP6.04□□□□□ -1.44
VCAN-210ENST00000513960 A8MWP4 228 aa6.03□□□□□ -1.44
VCAN-210ENST00000513960 KRTAP7-1Q8IUC3 87 aa6.03□□□□□ -1.44
VCAN-210ENST00000513960 CMYA5Q8N3K9 4069 aa6.02□□□□□ -1.45
VCAN-210ENST00000513960 LCA10Q71F78 164 aa6.02□□□□□ -1.45
VCAN-210ENST00000513960 LOC101927531A0A1B0GV80 90 aa6.01□□□□□ -1.45
VCAN-210ENST00000513960 SPINK6Q6UWN8 80 aa6.01□□□□□ -1.45
VCAN-210ENST00000513960 ATP11AUNQ6ZP68 121 aa6.01□□□□□ -1.45
VCAN-210ENST00000513960 SPANXA2-OT1Q8N9U9 137 aa6.01□□□□□ -1.45
VCAN-210ENST00000513960 H3BPC8 53 aa6□□□□□ -1.45
VCAN-210ENST00000513960 C14orf177Q52M58 125 aa6□□□□□ -1.45
VCAN-210ENST00000513960 KRTAP1-5Q9BYS1 174 aa6□□□□□ -1.45
VCAN-210ENST00000513960 FLG2Q5D862 2391 aaPredicted RBP5.99□□□□□ -1.45
VCAN-210ENST00000513960 STAB2Q8WWQ8 2551 aa5.99□□□□□ -1.45
VCAN-210ENST00000513960 DNAH3Q8TD57 4116 aa5.98□□□□□ -1.45
VCAN-210ENST00000513960 KRTAP29-1A8MX34 341 aaPredicted RBP5.98□□□□□ -1.45
VCAN-210ENST00000513960 APLNQ9ULZ1 77 aa5.97□□□□□ -1.45
VCAN-210ENST00000513960 Q75L30 129 aa5.97□□□□□ -1.45
VCAN-210ENST00000513960 HUWE1Q7Z6Z7 4374 aaKnown RBP5.96□□□□□ -1.45
VCAN-210ENST00000513960 ZNF706Q9Y5V0 76 aaPredicted RBP5.96□□□□□ -1.45
VCAN-210ENST00000513960 RETNLBQ9BQ08 111 aa5.96□□□□□ -1.46
VCAN-210ENST00000513960 SPINK7P58062 85 aa5.96□□□□□ -1.46
VCAN-210ENST00000513960 CDC42SE1Q9NRR8 79 aa5.96□□□□□ -1.46
VCAN-210ENST00000513960 PRR26Q8N8Z3 221 aa5.95□□□□□ -1.46
VCAN-210ENST00000513960 MMP24-AS1A0A0U1RRL7 71 aa5.94□□□□□ -1.46
VCAN-210ENST00000513960 SRRM2Q9UQ35 2752 aaKnown RBP5.94□□□□□ -1.46
VCAN-210ENST00000513960 IGLV7-46A0A075B6I9 117 aa5.94□□□□□ -1.46
VCAN-210ENST00000513960 C7orf65Q6ZTY9 151 aa5.94□□□□□ -1.46
VCAN-210ENST00000513960 C9orf163Q8N9P6 203 aa5.93□□□□□ -1.46
VCAN-210ENST00000513960 MOBPQ13875 183 aa5.93□□□□□ -1.46
VCAN-210ENST00000513960 LINC00472Q9H8W2 130 aa5.93□□□□□ -1.46
VCAN-210ENST00000513960 PRAC1Q96KF2 57 aa5.93□□□□□ -1.46
VCAN-210ENST00000513960 C8orf17Q9NRJ1 99 aa5.91□□□□□ -1.46
VCAN-210ENST00000513960 NBDYA0A0U1RRE5 68 aa5.91□□□□□ -1.46
VCAN-210ENST00000513960 NUPR2A6NF83 97 aa5.91□□□□□ -1.46
VCAN-210ENST00000513960 KRTAP11-1Q8IUC1 163 aa5.91□□□□□ -1.46
VCAN-210ENST00000513960 ANAPC11Q9NYG5 84 aa5.91□□□□□ -1.46
VCAN-210ENST00000513960 DMBT1Q9UGM3 2413 aaPredicted RBP5.91□□□□□ -1.46
VCAN-210ENST00000513960 TP53AIP1Q9HCN2 124 aa5.9□□□□□ -1.46
VCAN-210ENST00000513960 HRES1P13985 223 aa5.9□□□□□ -1.47
VCAN-210ENST00000513960 A6NN06 94 aa5.89□□□□□ -1.47
VCAN-210ENST00000513960 DNAH1Q9P2D7 4330 aa5.89□□□□□ -1.47
VCAN-210ENST00000513960 IGLV8-61A0A075B6I0 122 aa5.89□□□□□ -1.47
VCAN-210ENST00000513960 LINC01558Q9Y6Z2 57 aa5.88□□□□□ -1.47
VCAN-210ENST00000513960 MRPL34Q9BQ48 92 aaKnown RBP5.87□□□□□ -1.47
VCAN-210ENST00000513960 C8orf87E5RJ46 101 aa5.86□□□□□ -1.47
VCAN-210ENST00000513960 TENM2Q9NT68 2774 aa5.85□□□□□ -1.47
VCAN-210ENST00000513960 COL7A1Q02388 2944 aa5.85□□□□□ -1.47
VCAN-210ENST00000513960 A0A1B0GVX0 72 aa5.85□□□□□ -1.47
VCAN-210ENST00000513960 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
VCAN-210ENST00000513960 CIRBP-AS1Q8TBR5 109 aa5.84□□□□□ -1.47
VCAN-210ENST00000513960 SPRR1BP22528 89 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms