RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 A0A1W2PNN7 141 aa7.1□□□□□ -1.27
LIMCH1-217ENST00000512946 ZNF292O60281 2723 aa7.1□□□□□ -1.27
LIMCH1-217ENST00000512946 MGAQ8IWI9 3026 aa7.09□□□□□ -1.27
LIMCH1-217ENST00000512946 GIG44P09565 113 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-217ENST00000512946 WWC2-AS2Q96NR7 200 aa7.08□□□□□ -1.28
LIMCH1-217ENST00000512946 DSPP15924 2871 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-217ENST00000512946 ZCCHC13Q8WW36 166 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-217ENST00000512946 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-217ENST00000512946 DMXL1Q9Y485 3027 aa7.07□□□□□ -1.28
LIMCH1-217ENST00000512946 J3QL48 77 aa7.06□□□□□ -1.28
LIMCH1-217ENST00000512946 A0A087X002 238 aa7.06□□□□□ -1.28
LIMCH1-217ENST00000512946 JMJD1CQ15652 2540 aa7.06□□□□□ -1.28
LIMCH1-217ENST00000512946 A0A096LNT2 108 aa7.06□□□□□ -1.28
LIMCH1-217ENST00000512946 CYSTM1Q9H1C7 97 aa7.05□□□□□ -1.28
LIMCH1-217ENST00000512946 LRRK2Q5S007 2527 aa7.05□□□□□ -1.28
LIMCH1-217ENST00000512946 SPRR1BP22528 89 aa7.05□□□□□ -1.28
LIMCH1-217ENST00000512946 FRYQ5TBA9 3013 aa7.04□□□□□ -1.28
LIMCH1-217ENST00000512946 ACANP16112 2415 aa7.04□□□□□ -1.28
LIMCH1-217ENST00000512946 FLNBO75369 2602 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-217ENST00000512946 OXTP01178 125 aa7.02□□□□□ -1.29
LIMCH1-217ENST00000512946 SPRR1AP35321 89 aa7.02□□□□□ -1.29
LIMCH1-217ENST00000512946 Q6ZSA8 131 aa7.01□□□□□ -1.29
LIMCH1-217ENST00000512946 LINC00472Q9H8W2 130 aa7.01□□□□□ -1.29
LIMCH1-217ENST00000512946 Q5W150 140 aa7□□□□□ -1.29
LIMCH1-217ENST00000512946 SPATA8Q6RVD6 105 aa7□□□□□ -1.29
LIMCH1-217ENST00000512946 BOD1L1Q8NFC6 3051 aa7□□□□□ -1.29
LIMCH1-217ENST00000512946 S4R3F8 94 aa6.99□□□□□ -1.29
LIMCH1-217ENST00000512946 H1FX-AS1Q4G0G2 97 aa6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 ASPMQ8IZT6 3477 aa6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 COL27A1Q8IZC6 1860 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 ANAPC11Q9NYG5 84 aa6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 DMXL2Q8TDJ6 3036 aa6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 CENPEQ02224 2701 aa6.98□□□□□ -1.29
LIMCH1-217ENST00000512946 AKAP13Q12802 2813 aa6.96□□□□□ -1.29
LIMCH1-217ENST00000512946 A6NN06 94 aa6.95□□□□□ -1.3
LIMCH1-217ENST00000512946 R4GN34 69 aa6.95□□□□□ -1.3
LIMCH1-217ENST00000512946 KRTAP24-1Q3LI83 254 aa6.95□□□□□ -1.3
LIMCH1-217ENST00000512946 CR1P17927 2039 aa6.94□□□□□ -1.3
LIMCH1-217ENST00000512946 Q6ZR54 194 aa6.94□□□□□ -1.3
LIMCH1-217ENST00000512946 USP9YO00507 2555 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-217ENST00000512946 KRTAP25-1Q3LHN0 102 aa6.93□□□□□ -1.3
LIMCH1-217ENST00000512946 LOC400499M0QZD8 3231 aa6.91□□□□□ -1.3
LIMCH1-217ENST00000512946 CFAP47Q6ZTR5 3102 aa6.9□□□□□ -1.3
LIMCH1-217ENST00000512946 SETD2Q9BYW2 2564 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-217ENST00000512946 POLQO75417 2590 aa6.89□□□□□ -1.31
LIMCH1-217ENST00000512946 COL12A1Q99715 3063 aa6.88□□□□□ -1.31
LIMCH1-217ENST00000512946 MAP1AP78559 2803 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-217ENST00000512946 LAMA5O15230 3695 aa6.88□□□□□ -1.31
LIMCH1-217ENST00000512946 HECTD1Q9ULT8 2610 aa6.87□□□□□ -1.31
LIMCH1-217ENST00000512946 SEC61BP60468 96 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-217ENST00000512946 K7EIL1 84 aa6.86□□□□□ -1.31
LIMCH1-217ENST00000512946 DCHS1Q96JQ0 3298 aa6.86□□□□□ -1.31
LIMCH1-217ENST00000512946 PCSK5Q92824 1860 aa6.85□□□□□ -1.31
LIMCH1-217ENST00000512946 CASC10Q5T4H9 136 aa6.85□□□□□ -1.31
LIMCH1-217ENST00000512946 PLAC8Q9NZF1 115 aa6.83□□□□□ -1.32
LIMCH1-217ENST00000512946 ZZEF1O43149 2961 aa6.83□□□□□ -1.32
LIMCH1-217ENST00000512946 KRTAP29-1A8MX34 341 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-217ENST00000512946 COL4A2P08572 1712 aa6.82□□□□□ -1.32
LIMCH1-217ENST00000512946 CHD6Q8TD26 2715 aa6.81□□□□□ -1.32
LIMCH1-217ENST00000512946 KRTAP10-11P60412 298 aa6.81□□□□□ -1.32
LIMCH1-217ENST00000512946 KRTAP26-1Q6PEX3 210 aa6.81□□□□□ -1.32
LIMCH1-217ENST00000512946 PLAC4Q8WY50 150 aa6.8□□□□□ -1.32
LIMCH1-217ENST00000512946 MTORP42345 2549 aa6.79□□□□□ -1.32
LIMCH1-217ENST00000512946 ATMQ13315 3056 aa6.79□□□□□ -1.32
LIMCH1-217ENST00000512946 USP24Q9UPU5 2620 aa6.78□□□□□ -1.32
LIMCH1-217ENST00000512946 LCE6AA0A183 80 aa6.77□□□□□ -1.33
LIMCH1-217ENST00000512946 FLG2Q5D862 2391 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-217ENST00000512946 KALRNO60229 2985 aa6.76□□□□□ -1.33
LIMCH1-217ENST00000512946 NDUFAF8A1L188 74 aa6.76□□□□□ -1.33
LIMCH1-217ENST00000512946 SMR3BP02814 79 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-217ENST00000512946 M0QZ58 72 aa6.76□□□□□ -1.33
LIMCH1-217ENST00000512946 HELZ2Q9BYK8 2649 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-217ENST00000512946 ZFHX4Q86UP3 3567 aa6.75□□□□□ -1.33
LIMCH1-217ENST00000512946 SPENQ96T58 3664 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-217ENST00000512946 PANO1I0J062 215 aa6.73□□□□□ -1.33
LIMCH1-217ENST00000512946 NBEAQ8NFP9 2946 aa6.72□□□□□ -1.33
LIMCH1-217ENST00000512946 Q8NDZ9 215 aa6.72□□□□□ -1.33
LIMCH1-217ENST00000512946 CFAP46Q8IYW2 2715 aa6.72□□□□□ -1.33
LIMCH1-217ENST00000512946 IGSF10Q6WRI0 2623 aa6.71□□□□□ -1.34
LIMCH1-217ENST00000512946 ADGRG4Q8IZF6 3080 aa6.69□□□□□ -1.34
LIMCH1-217ENST00000512946 M0R2T5 61 aa6.68□□□□□ -1.34
LIMCH1-217ENST00000512946 FLNCQ14315 2725 aa6.68□□□□□ -1.34
LIMCH1-217ENST00000512946 RELNP78509 3460 aa6.67□□□□□ -1.34
LIMCH1-217ENST00000512946 KRTAP10-3P60369 221 aa6.64□□□□□ -1.35
LIMCH1-217ENST00000512946 C20orf166-AS1Q96NR2 134 aa6.63□□□□□ -1.35
LIMCH1-217ENST00000512946 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
LIMCH1-217ENST00000512946 SMG1Q96Q15 3661 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-217ENST00000512946 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-217ENST00000512946 TEP1Q99973 2627 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-217ENST00000512946 ANKRD17O75179 2603 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-217ENST00000512946 PP632Q6XCG6 107 aa6.58□□□□□ -1.36
LIMCH1-217ENST00000512946 RPS29P62273 56 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-217ENST00000512946 KRTAP11-1Q8IUC1 163 aa6.57□□□□□ -1.36
LIMCH1-217ENST00000512946 ITPR1Q14643 2758 aa6.55□□□□□ -1.36
LIMCH1-217ENST00000512946 TACC2O95359 2948 aa6.53□□□□□ -1.36
LIMCH1-217ENST00000512946 UTP20O75691 2785 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-217ENST00000512946 A8MUU9 505 aa6.53□□□□□ -1.36
LIMCH1-217ENST00000512946 CRYBG3Q68DQ2 2970 aa6.52□□□□□ -1.37
LIMCH1-217ENST00000512946 BAHCC1Q9P281 2608 aa6.52□□□□□ -1.37
LIMCH1-217ENST00000512946 GCN1Q92616 2671 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms