RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FAM229BQ4G0N7 80 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 C9orf163Q8N9P6 203 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 MAST4O15021 2626 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 LAMA5O15230 3695 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 RTL8CO15255 209 aa5.33□□□□□ -1.56
LIMCH1-216ENST00000512820 MRPL34Q9BQ48 92 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-216ENST00000512820 C8orf17Q9NRJ1 99 aa5.32□□□□□ -1.56
LIMCH1-216ENST00000512820 UTP20O75691 2785 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-216ENST00000512820 RELNP78509 3460 aa5.32□□□□□ -1.56
LIMCH1-216ENST00000512820 ACYP2P14621 99 aa5.31□□□□□ -1.56
LIMCH1-216ENST00000512820 CYP4F30PQ9H0H9 118 aa5.31□□□□□ -1.56
LIMCH1-216ENST00000512820 SPANXA2-OT1Q8N9U9 137 aa5.3□□□□□ -1.56
LIMCH1-216ENST00000512820 ASH1LQ9NR48 2969 aaKnown RBP5.3□□□□□ -1.56
LIMCH1-216ENST00000512820 UBR5O95071 2799 aaPredicted RBP5.3□□□□□ -1.56
LIMCH1-216ENST00000512820 SMG1Q96Q15 3661 aaKnown RBP5.3□□□□□ -1.56
LIMCH1-216ENST00000512820 LOC101927531A0A1B0GV80 90 aa5.29□□□□□ -1.56
LIMCH1-216ENST00000512820 Q1T7F1 81 aa5.29□□□□□ -1.56
LIMCH1-216ENST00000512820 IGKV2D-30A0A075B6S6 120 aa5.29□□□□□ -1.56
LIMCH1-216ENST00000512820 A0A1B0GVX0 72 aa5.29□□□□□ -1.56
LIMCH1-216ENST00000512820 IGKV2-30P06310 120 aa5.29□□□□□ -1.56
LIMCH1-216ENST00000512820 SPINK1P00995 79 aa5.28□□□□□ -1.56
LIMCH1-216ENST00000512820 A0A1B0GU69 56 aa5.28□□□□□ -1.56
LIMCH1-216ENST00000512820 ANAPC11Q9NYG5 84 aa5.27□□□□□ -1.57
LIMCH1-216ENST00000512820 LINC00313P59037 77 aa5.27□□□□□ -1.57
LIMCH1-216ENST00000512820 APLNQ9ULZ1 77 aa5.27□□□□□ -1.57
LIMCH1-216ENST00000512820 TNP2Q05952 138 aa5.26□□□□□ -1.57
LIMCH1-216ENST00000512820 SPACA4Q8TDM5 124 aa5.26□□□□□ -1.57
LIMCH1-216ENST00000512820 ZNF861PO60384 105 aa5.26□□□□□ -1.57
LIMCH1-216ENST00000512820 NOTCH1P46531 2555 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 CSMD1Q96PZ7 3565 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 DCHS2Q6V1P9 2916 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 KRTAP4-16G5E9R7 235 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 A0A087WTM6 91 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 C8orf87E5RJ46 101 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 C7orf65Q6ZTY9 151 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 TEP1Q99973 2627 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 PSORS1C2Q9UIG4 136 aa5.24□□□□□ -1.57
LIMCH1-216ENST00000512820 IGLV8-61A0A075B6I0 122 aa5.23□□□□□ -1.57
LIMCH1-216ENST00000512820 FAM229AH3BQW9 127 aa5.23□□□□□ -1.57
LIMCH1-216ENST00000512820 K7ERS5 55 aa5.23□□□□□ -1.57
LIMCH1-216ENST00000512820 ATP11AUNQ6ZP68 121 aa5.22□□□□□ -1.57
LIMCH1-216ENST00000512820 FBN2P35556 2912 aa5.22□□□□□ -1.57
LIMCH1-216ENST00000512820 APCP25054 2843 aa5.21□□□□□ -1.58
LIMCH1-216ENST00000512820 IGLV7-46A0A075B6I9 117 aa5.21□□□□□ -1.58
LIMCH1-216ENST00000512820 MMP24-AS1A0A0U1RRL7 71 aa5.21□□□□□ -1.58
LIMCH1-216ENST00000512820 LINC00472Q9H8W2 130 aa5.21□□□□□ -1.58
LIMCH1-216ENST00000512820 SSBP3-AS1Q7Z2R9 100 aa5.2□□□□□ -1.58
LIMCH1-216ENST00000512820 KRTAP1-5Q9BYS1 174 aa5.2□□□□□ -1.58
LIMCH1-216ENST00000512820 SPRR1BP22528 89 aa5.2□□□□□ -1.58
LIMCH1-216ENST00000512820 NF1P21359 2839 aa5.19□□□□□ -1.58
LIMCH1-216ENST00000512820 CRYBG3Q68DQ2 2970 aa5.19□□□□□ -1.58
LIMCH1-216ENST00000512820 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-216ENST00000512820 Q8N9P0 234 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-216ENST00000512820 ITPR2Q14571 2701 aa5.18□□□□□ -1.58
LIMCH1-216ENST00000512820 IGLV7-43P04211 117 aa5.18□□□□□ -1.58
LIMCH1-216ENST00000512820 MXRA5Q9NR99 2828 aa5.17□□□□□ -1.58
LIMCH1-216ENST00000512820 COL6A5A8TX70 2615 aa5.17□□□□□ -1.58
LIMCH1-216ENST00000512820 KTN1-AS1Q86SY8 53 aa5.17□□□□□ -1.58
LIMCH1-216ENST00000512820 STAB1Q9NY15 2570 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 ZCCHC13Q8WW36 166 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 CDC42SE1Q9NRR8 79 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 CELSR2Q9HCU4 2923 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 PRR26Q8N8Z3 221 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 TYMSOSQ8TAI1 123 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 Q96NJ1 140 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 CD164Q04900 197 aa5.16□□□□□ -1.58
LIMCH1-216ENST00000512820 Q5VV11 94 aa5.15□□□□□ -1.58
LIMCH1-216ENST00000512820 KRTAP7-1Q8IUC3 87 aa5.15□□□□□ -1.59
LIMCH1-216ENST00000512820 Q75L30 129 aa5.14□□□□□ -1.59
LIMCH1-216ENST00000512820 KRTAP29-1A8MX34 341 aaPredicted RBP5.14□□□□□ -1.59
LIMCH1-216ENST00000512820 SVEP1Q4LDE5 3571 aa5.13□□□□□ -1.59
LIMCH1-216ENST00000512820 UQCR11O14957 56 aa5.13□□□□□ -1.59
LIMCH1-216ENST00000512820 BAHCC1Q9P281 2608 aa5.13□□□□□ -1.59
LIMCH1-216ENST00000512820 PLA2G1BP04054 148 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-216ENST00000512820 LCE6AA0A183 80 aa5.11□□□□□ -1.59
LIMCH1-216ENST00000512820 LINC01558Q9Y6Z2 57 aa5.11□□□□□ -1.59
LIMCH1-216ENST00000512820 NIPBLQ6KC79 2804 aaeCLIP5.11□□□□□ -1.59
LIMCH1-216ENST00000512820 HIVEP1P15822 2718 aa5.11□□□□□ -1.59
LIMCH1-216ENST00000512820 MIR22HGQ0VDD5 57 aa5.11□□□□□ -1.59
LIMCH1-216ENST00000512820 HRES1P13985 223 aa5.1□□□□□ -1.59
LIMCH1-216ENST00000512820 CELSR1Q9NYQ6 3014 aa5.1□□□□□ -1.59
LIMCH1-216ENST00000512820 NBEAL1Q6ZS30 2694 aa5.09□□□□□ -1.59
LIMCH1-216ENST00000512820 NSD1Q96L73 2696 aaPredicted RBP5.08□□□□□ -1.6
LIMCH1-216ENST00000512820 PANO1I0J062 215 aa5.08□□□□□ -1.6
LIMCH1-216ENST00000512820 KRTAP11-1Q8IUC1 163 aa5.08□□□□□ -1.6
LIMCH1-216ENST00000512820 PLAC8Q9NZF1 115 aa5.08□□□□□ -1.6
LIMCH1-216ENST00000512820 WWC2-AS2Q96NR7 200 aa5.07□□□□□ -1.6
LIMCH1-216ENST00000512820 LCA10Q71F78 164 aa5.06□□□□□ -1.6
LIMCH1-216ENST00000512820 SPINK7P58062 85 aa5.04□□□□□ -1.6
LIMCH1-216ENST00000512820 LINC00483Q53H64 154 aa5.04□□□□□ -1.6
LIMCH1-216ENST00000512820 LINC00304Q8N9R0 145 aa5.04□□□□□ -1.6
LIMCH1-216ENST00000512820 Q6ZR54 194 aa5.03□□□□□ -1.6
LIMCH1-216ENST00000512820 SPENQ96T58 3664 aaKnown RBP5.03□□□□□ -1.6
LIMCH1-216ENST00000512820 Q8N1X5 172 aa5.03□□□□□ -1.6
LIMCH1-216ENST00000512820 RBM12B-AS1Q9P1G2 102 aa5.02□□□□□ -1.61
LIMCH1-216ENST00000512820 Q5W150 140 aa5.01□□□□□ -1.61
LIMCH1-216ENST00000512820 C9orf92A6NGG3 77 aa5.01□□□□□ -1.61
LIMCH1-216ENST00000512820 BSNQ9UPA5 3926 aa5□□□□□ -1.61
LIMCH1-216ENST00000512820 A0A087X002 238 aa4.99□□□□□ -1.61
LIMCH1-216ENST00000512820 NOTCH2NLQ7Z3S9 236 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms