RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 C1orf195Q5TG92 126 aa6.01□□□□□ -1.45
LIMCH1-214ENST00000512228 UQCR10Q9UDW1 63 aa6.01□□□□□ -1.45
LIMCH1-214ENST00000512228 TRBV7-6A0A0J9YX20 115 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 TMEM238LA0A1B0GVL6 79 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 A6NDN8 102 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 A6NJY4 79 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 CD164Q04900 197 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 PRO1933Q9H354 126 aa6□□□□□ -1.45
LIMCH1-214ENST00000512228 C2orf91Q6ZV80 131 aa5.99□□□□□ -1.45
LIMCH1-214ENST00000512228 SMIM11BQ8TCY0 68 aa5.99□□□□□ -1.45
LIMCH1-214ENST00000512228 LIMD2Q9BT23 127 aa5.99□□□□□ -1.45
LIMCH1-214ENST00000512228 FSIP2Q5CZC0 6907 aa5.99□□□□□ -1.45
LIMCH1-214ENST00000512228 LOC105371267A0A1B0GV96 52 aa5.98□□□□□ -1.45
LIMCH1-214ENST00000512228 A0A1B0GWB2 263 aa5.98□□□□□ -1.45
LIMCH1-214ENST00000512228 A4D1N5 150 aa5.98□□□□□ -1.45
LIMCH1-214ENST00000512228 Q5XG85 94 aa5.98□□□□□ -1.45
LIMCH1-214ENST00000512228 HSD52Q0P140 79 aa5.97□□□□□ -1.45
LIMCH1-214ENST00000512228 CEND1Q8N111 149 aa5.97□□□□□ -1.45
LIMCH1-214ENST00000512228 A0A0B4J2C4 111 aa5.95□□□□□ -1.46
LIMCH1-214ENST00000512228 TSTD3H0UI37 97 aa5.94□□□□□ -1.46
LIMCH1-214ENST00000512228 VAMP3Q15836 100 aa5.94□□□□□ -1.46
LIMCH1-214ENST00000512228 RAB37Q96AX2 223 aa5.94□□□□□ -1.46
LIMCH1-214ENST00000512228 CRCT1Q9UGL9 99 aa5.94□□□□□ -1.46
LIMCH1-214ENST00000512228 LORP23490 312 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-214ENST00000512228 C12orf57Q99622 126 aa5.93□□□□□ -1.46
LIMCH1-214ENST00000512228 NHP2Q9NX24 153 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-214ENST00000512228 CFC1BP0CG36 223 aa5.92□□□□□ -1.46
LIMCH1-214ENST00000512228 CFC1P0CG37 223 aa5.92□□□□□ -1.46
LIMCH1-214ENST00000512228 RPL37P61927 97 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-214ENST00000512228 LINC00575Q6W349 94 aa5.92□□□□□ -1.46
LIMCH1-214ENST00000512228 KRTAP10-6P60371 365 aaPredicted RBP5.91□□□□□ -1.46
LIMCH1-214ENST00000512228 BVES-AS1Q5T3Y7 98 aa5.91□□□□□ -1.46
LIMCH1-214ENST00000512228 FXYD2P54710 66 aa5.9□□□□□ -1.46
LIMCH1-214ENST00000512228 PRO1854Q9UHT4 67 aa5.9□□□□□ -1.46
LIMCH1-214ENST00000512228 M0R143 59 aa5.89□□□□□ -1.47
LIMCH1-214ENST00000512228 SNCGO76070 127 aa5.89□□□□□ -1.47
LIMCH1-214ENST00000512228 IGFL1Q6UW32 110 aa5.88□□□□□ -1.47
LIMCH1-214ENST00000512228 Q6ZQY7 126 aa5.88□□□□□ -1.47
LIMCH1-214ENST00000512228 H0YGX0 51 aa5.87□□□□□ -1.47
LIMCH1-214ENST00000512228 hADV29S1A0JD25 119 aa5.86□□□□□ -1.47
LIMCH1-214ENST00000512228 OCIAD2Q56VL3 154 aa5.86□□□□□ -1.47
LIMCH1-214ENST00000512228 FLGP20930 4061 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-214ENST00000512228 TRBV7-7A0A0K0K1E9 115 aa5.85□□□□□ -1.47
LIMCH1-214ENST00000512228 COX6CP09669 75 aa5.85□□□□□ -1.47
LIMCH1-214ENST00000512228 A0A1B0GX51 115 aa5.84□□□□□ -1.47
LIMCH1-214ENST00000512228 TCL1BO95988 128 aa5.84□□□□□ -1.47
LIMCH1-214ENST00000512228 GHRHP01286 108 aa5.84□□□□□ -1.47
LIMCH1-214ENST00000512228 H3BUT2 72 aa5.83□□□□□ -1.48
LIMCH1-214ENST00000512228 PSMB2P49721 201 aa5.82□□□□□ -1.48
LIMCH1-214ENST00000512228 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-214ENST00000512228 OBSCN-AS1Q96MR7 158 aa5.82□□□□□ -1.48
LIMCH1-214ENST00000512228 F8WEM9 126 aa5.81□□□□□ -1.48
LIMCH1-214ENST00000512228 Q6JHZ5 121 aa5.81□□□□□ -1.48
LIMCH1-214ENST00000512228 PPDPFLQ8WWR9 84 aa5.81□□□□□ -1.48
LIMCH1-214ENST00000512228 CLEC2BQ92478 149 aa5.81□□□□□ -1.48
LIMCH1-214ENST00000512228 K7ERJ3 54 aa5.8□□□□□ -1.48
LIMCH1-214ENST00000512228 M0R2T5 61 aa5.8□□□□□ -1.48
LIMCH1-214ENST00000512228 FAM218AQ96MZ4 157 aa5.8□□□□□ -1.48
LIMCH1-214ENST00000512228 H3BQ85 93 aa5.79□□□□□ -1.48
LIMCH1-214ENST00000512228 TRIAP1O43715 76 aa5.79□□□□□ -1.48
LIMCH1-214ENST00000512228 COX6B2Q6YFQ2 88 aa5.79□□□□□ -1.48
LIMCH1-214ENST00000512228 DNAL4O96015 105 aa5.77□□□□□ -1.49
LIMCH1-214ENST00000512228 SCGB1C2P0DMR2 95 aa5.77□□□□□ -1.49
LIMCH1-214ENST00000512228 LYRM7Q5U5X0 104 aa5.77□□□□□ -1.49
LIMCH1-214ENST00000512228 Q75L30 129 aa5.77□□□□□ -1.49
LIMCH1-214ENST00000512228 SNHG12Q9BXW3 62 aa5.77□□□□□ -1.49
LIMCH1-214ENST00000512228 Q6Q795 121 aa5.76□□□□□ -1.49
LIMCH1-214ENST00000512228 Q96NJ1 140 aa5.76□□□□□ -1.49
LIMCH1-214ENST00000512228 BATFQ16520 125 aa5.75□□□□□ -1.49
LIMCH1-214ENST00000512228 KRTAP16-1A8MUX0 517 aa5.74□□□□□ -1.49
LIMCH1-214ENST00000512228 LST1O00453 97 aa5.74□□□□□ -1.49
LIMCH1-214ENST00000512228 TRACP01848 142 aa5.74□□□□□ -1.49
LIMCH1-214ENST00000512228 ATP11AUNQ6ZP68 121 aa5.74□□□□□ -1.49
LIMCH1-214ENST00000512228 NDUFV3P56181 108 aaKnown RBP5.73□□□□□ -1.49
LIMCH1-214ENST00000512228 ORMDL1Q9P0S3 153 aa5.73□□□□□ -1.49
LIMCH1-214ENST00000512228 TMEM256-PLSCR3K7ERE1 68 aa5.72□□□□□ -1.49
LIMCH1-214ENST00000512228 KRTAP9-8Q9BYQ0 159 aa5.72□□□□□ -1.49
LIMCH1-214ENST00000512228 TRBV20-1A0A075B6N2 111 aa5.71□□□□□ -1.5
LIMCH1-214ENST00000512228 A8MUU9 505 aa5.71□□□□□ -1.5
LIMCH1-214ENST00000512228 ATXN8Q156A1 80 aa5.71□□□□□ -1.5
LIMCH1-214ENST00000512228 C20orf166-AS1Q96NR2 134 aa5.71□□□□□ -1.5
LIMCH1-214ENST00000512228 A0A087WSZ3 146 aa5.7□□□□□ -1.5
LIMCH1-214ENST00000512228 A0A1W2PNM2 257 aa5.7□□□□□ -1.5
LIMCH1-214ENST00000512228 C9orf118A6NHY6 69 aa5.7□□□□□ -1.5
LIMCH1-214ENST00000512228 TEN1Q86WV5 123 aa5.7□□□□□ -1.5
LIMCH1-214ENST00000512228 DSCR10P59022 87 aa5.69□□□□□ -1.5
LIMCH1-214ENST00000512228 COL5A1-AS1Q5SY13 56 aa5.69□□□□□ -1.5
LIMCH1-214ENST00000512228 NOTCH2NLQ7Z3S9 236 aa5.69□□□□□ -1.5
LIMCH1-214ENST00000512228 H3BMG7 143 aa5.68□□□□□ -1.5
LIMCH1-214ENST00000512228 FABP2P12104 132 aa5.68□□□□□ -1.5
LIMCH1-214ENST00000512228 TAX1BP3O14907 124 aa5.67□□□□□ -1.5
LIMCH1-214ENST00000512228 UBE2V1Q13404 147 aa5.67□□□□□ -1.5
LIMCH1-214ENST00000512228 A0A1W2PPM0 123 aa5.65□□□□□ -1.5
LIMCH1-214ENST00000512228 PCP4L1A6NKN8 68 aa5.65□□□□□ -1.5
LIMCH1-214ENST00000512228 NAA38Q9BRA0 125 aaKnown RBP5.65□□□□□ -1.5
LIMCH1-214ENST00000512228 A0A1B0GV72 72 aa5.64□□□□□ -1.51
LIMCH1-214ENST00000512228 DEFB116Q30KQ4 102 aa5.64□□□□□ -1.51
LIMCH1-214ENST00000512228 BAALC-AS2P0C853 105 aa5.63□□□□□ -1.51
LIMCH1-214ENST00000512228 SS18L2Q9UHA2 77 aa5.63□□□□□ -1.51
LIMCH1-214ENST00000512228 ANKRD29Q8N6D5 301 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms