RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	PCP2	Q8IVA1	136 aa		4.67	□□□□□ -1.66
NR1I3-218	ENST00000503547	C12orf57	Q99622	126 aa		4.67	□□□□□ -1.66
NR1I3-218	ENST00000503547	TRBV7-6	A0A0J9YX20	115 aa		4.66	□□□□□ -1.66
NR1I3-218	ENST00000503547		A6NDN8	102 aa		4.66	□□□□□ -1.66
NR1I3-218	ENST00000503547		F8WEM9	126 aa		4.66	□□□□□ -1.66
NR1I3-218	ENST00000503547	ATP11AUN	Q6ZP68	121 aa		4.66	□□□□□ -1.66
NR1I3-218	ENST00000503547	IGLV5-48	A0A075B6I7	105 aa		4.65	□□□□□ -1.67
NR1I3-218	ENST00000503547	SCGB1D4	Q6XE38	83 aa		4.65	□□□□□ -1.67
NR1I3-218	ENST00000503547	TTTY13	Q9BZ97	58 aa		4.65	□□□□□ -1.67
NR1I3-218	ENST00000503547	SYS1-DBNDD2	H3BUS1	97 aa		4.64	□□□□□ -1.67
NR1I3-218	ENST00000503547	COPS9	Q8WXC6	57 aa		4.64	□□□□□ -1.67
NR1I3-218	ENST00000503547	OBSCN-AS1	Q96MR7	158 aa		4.64	□□□□□ -1.67
NR1I3-218	ENST00000503547	NHP2	Q9NX24	153 aa	Known RBP	4.64	□□□□□ -1.67
NR1I3-218	ENST00000503547		A4D1N5	150 aa		4.63	□□□□□ -1.67
NR1I3-218	ENST00000503547	CFC1	P0CG37	223 aa		4.63	□□□□□ -1.67
NR1I3-218	ENST00000503547	COA6	Q5JTJ3	125 aa	Known RBP	4.62	□□□□□ -1.67
NR1I3-218	ENST00000503547	SNRPE	P62304	92 aa	Known RBP	4.61	□□□□□ -1.67
NR1I3-218	ENST00000503547	LCE1D	Q5T752	114 aa		4.61	□□□□□ -1.67
NR1I3-218	ENST00000503547		Q75L30	129 aa		4.61	□□□□□ -1.67
NR1I3-218	ENST00000503547	LINC01545	Q5VT33	79 aa		4.6	□□□□□ -1.67
NR1I3-218	ENST00000503547	CLEC2B	Q92478	149 aa		4.6	□□□□□ -1.67
NR1I3-218	ENST00000503547	TRBV7-7	A0A0K0K1E9	115 aa		4.59	□□□□□ -1.67
NR1I3-218	ENST00000503547	C20orf202	A1L168	122 aa		4.59	□□□□□ -1.67
NR1I3-218	ENST00000503547	IFITM1	P13164	125 aa		4.59	□□□□□ -1.67
NR1I3-218	ENST00000503547	SMIM11B	Q8TCY0	68 aa		4.59	□□□□□ -1.67
NR1I3-218	ENST00000503547	TRBV20-1	A0A075B6N2	111 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547	TRAV13-2	A0A0B4J235	113 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547	S100A6	P06703	90 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547	VAMP3	Q15836	100 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547		Q6JHZ5	121 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547	MUSTN1	Q8IVN3	82 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547		Q96NJ1	140 aa		4.58	□□□□□ -1.68
NR1I3-218	ENST00000503547	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547	KRTDAP	P60985	99 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547	PYY3	Q5JQD4	70 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547	IGFL1	Q6UW32	110 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547		Q6ZQY7	126 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547		Q6ZVH6	145 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547	KRTAP4-7	Q9BYR0	210 aa		4.57	□□□□□ -1.68
NR1I3-218	ENST00000503547	LST1	O00453	97 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BK	O60814	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BJ	P06899	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BO	P23527	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BB	P33778	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BD	P58876	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BC	P62807	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST2H2BE	Q16778	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST3H2BB	Q8N257	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BH	Q93079	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BN	Q99877	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	HIST1H2BM	Q99879	126 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	KRTAP9-8	Q9BYQ0	159 aa		4.56	□□□□□ -1.68
NR1I3-218	ENST00000503547	hADV29S1	A0JD25	119 aa		4.55	□□□□□ -1.68
NR1I3-218	ENST00000503547	C3orf79	P0CE67	100 aa		4.55	□□□□□ -1.68
NR1I3-218	ENST00000503547	LINC00575	Q6W349	94 aa		4.55	□□□□□ -1.68
NR1I3-218	ENST00000503547	FAM236D	A0A1B0GTK5	79 aa		4.54	□□□□□ -1.68
NR1I3-218	ENST00000503547	PCP4L1	A6NKN8	68 aa		4.54	□□□□□ -1.68
NR1I3-218	ENST00000503547	FAM236C	P0DP71	79 aa		4.54	□□□□□ -1.68
NR1I3-218	ENST00000503547	OCIAD2	Q56VL3	154 aa		4.54	□□□□□ -1.68
NR1I3-218	ENST00000503547	ATOH7	Q8N100	152 aa		4.53	□□□□□ -1.68
NR1I3-218	ENST00000503547	SYNE2	Q8WXH0	6885 aa	Known RBP	4.52	□□□□□ -1.69
NR1I3-218	ENST00000503547		H3BUT2	72 aa		4.52	□□□□□ -1.69
NR1I3-218	ENST00000503547	HIST1H2BL	Q99880	126 aa		4.52	□□□□□ -1.69
NR1I3-218	ENST00000503547	SNHG12	Q9BXW3	62 aa		4.52	□□□□□ -1.69
NR1I3-218	ENST00000503547	SS18L2	Q9UHA2	77 aa		4.52	□□□□□ -1.69
NR1I3-218	ENST00000503547	S100A2	P29034	98 aa		4.51	□□□□□ -1.69
NR1I3-218	ENST00000503547	KRTAP19-4	Q3LI73	84 aa		4.51	□□□□□ -1.69
NR1I3-218	ENST00000503547	C14orf144	Q96I85	54 aa		4.51	□□□□□ -1.69
NR1I3-218	ENST00000503547	C20orf166-AS1	Q96NR2	134 aa		4.51	□□□□□ -1.69
NR1I3-218	ENST00000503547	MT2A	P02795	61 aa		4.5	□□□□□ -1.69
NR1I3-218	ENST00000503547	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	4.5	□□□□□ -1.69
NR1I3-218	ENST00000503547	MACF1	Q9UPN3	7388 aa	Known RBP	4.49	□□□□□ -1.69
NR1I3-218	ENST00000503547		A8MUU9	505 aa		4.49	□□□□□ -1.69
NR1I3-218	ENST00000503547	PPDPFL	Q8WWR9	84 aa		4.49	□□□□□ -1.69
NR1I3-218	ENST00000503547	TSTD3	H0UI37	97 aa		4.48	□□□□□ -1.69
NR1I3-218	ENST00000503547	DSCR10	P59022	87 aa		4.48	□□□□□ -1.69
NR1I3-218	ENST00000503547	KRTAP10-10	P60014	251 aa		4.48	□□□□□ -1.69
NR1I3-218	ENST00000503547	KRTAP4-9	Q9BYQ8	210 aa		4.48	□□□□□ -1.69
NR1I3-218	ENST00000503547		A0A0A0MQY5	61 aa		4.47	□□□□□ -1.69
NR1I3-218	ENST00000503547	KRTAP23-1	A1A580	65 aa		4.47	□□□□□ -1.69
NR1I3-218	ENST00000503547	BVES-AS1	Q5T3Y7	98 aa		4.47	□□□□□ -1.69
NR1I3-218	ENST00000503547	SIGMAR1	Q99720	223 aa		4.47	□□□□□ -1.69
NR1I3-218	ENST00000503547	RBM12B-AS1	Q9P1G2	102 aa		4.47	□□□□□ -1.69
NR1I3-218	ENST00000503547		A0A087WSZ3	146 aa		4.46	□□□□□ -1.7
NR1I3-218	ENST00000503547	MT1F	P04733	61 aa		4.46	□□□□□ -1.7
NR1I3-218	ENST00000503547	TEN1	Q86WV5	123 aa		4.45	□□□□□ -1.7
NR1I3-218	ENST00000503547	HSBP1L1	C9JCN9	74 aa		4.44	□□□□□ -1.7
NR1I3-218	ENST00000503547	SNCG	O76070	127 aa		4.44	□□□□□ -1.7
NR1I3-218	ENST00000503547	LINC00846	Q9NV44	126 aa		4.43	□□□□□ -1.7
NR1I3-218	ENST00000503547	PAM16	Q9Y3D7	125 aa		4.43	□□□□□ -1.7
NR1I3-218	ENST00000503547	NDUFV3	P56181	108 aa	Known RBP	4.42	□□□□□ -1.7
NR1I3-218	ENST00000503547	LINC00313	P59037	77 aa		4.42	□□□□□ -1.7
NR1I3-218	ENST00000503547	KRTAP9-3	Q9BYQ3	159 aa		4.42	□□□□□ -1.7
NR1I3-218	ENST00000503547		A0A1B0GV90	55 aa		4.41	□□□□□ -1.7
NR1I3-218	ENST00000503547	LCE4A	Q5TA78	99 aa		4.41	□□□□□ -1.7
NR1I3-218	ENST00000503547	HIST1H4G	Q99525	98 aa		4.41	□□□□□ -1.7
NR1I3-218	ENST00000503547	KRTAP16-1	A8MUX0	517 aa		4.4	□□□□□ -1.71
NR1I3-218	ENST00000503547		H3BMG7	143 aa		4.4	□□□□□ -1.71
NR1I3-218	ENST00000503547		M0R143	59 aa		4.4	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms