RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 Q1T7F1 81 aa10.27□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 MRPL55Q7Z7F7 128 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 C1orf137Q5JT78 98 aa10.24□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 A0A1B0GW54 56 aa10.23□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 KMT2AQ03164 3969 aa10.23□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 OCR1Q9BZK8 76 aa10.22□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 Q8NBF4 154 aa10.22□□□□□ -0.77
MSH5-SAPCD1-208ENST00000498473 DNAH10Q8IVF4 4471 aa10.21□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 SPRR4Q96PI1 79 aa10.2□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 DYNC2H1Q8NCM8 4307 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 UBE2BP63146 152 aa10.19□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 REG3GQ6UW15 175 aa10.19□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 SMIM29Q86T20 159 aa10.19□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 hDV103S1A0JD37 113 aa10.19□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 KRTAP1-5Q9BYS1 174 aa10.18□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 HYDINQ4G0P3 5121 aa10.16□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 A0A096LNI7 61 aa10.15□□□□□ -0.78
MSH5-SAPCD1-208ENST00000498473 A0A1W2PNN7 141 aa10.14□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 DSCR10P59022 87 aa10.14□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 LINC00476Q8WZB0 136 aa10.13□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 KMT2CQ8NEZ4 4911 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 C16orf90A8MZG2 172 aa10.12□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 A0A0G2JQZ4 141 aa10.11□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 CNBPP62633 177 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 IGKV2-24A0A0C4DH68 120 aa10.1□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 KTN1-AS1Q86SY8 53 aa10.1□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 WWC2-AS2Q96NR7 200 aa10.1□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 PRLHP81277 87 aa10.1□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 IGFL1Q6UW32 110 aa10.09□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 FAM30AQ9NZY2 134 aa10.09□□□□□ -0.79
MSH5-SAPCD1-208ENST00000498473 K7EQZ3 153 aa10.08□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 HIGD2AQ9BW72 106 aa10.08□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 RBM12B-AS1Q9P1G2 102 aa10.07□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 TRAV22A0A0B4J277 110 aa10.07□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 LCE6AA0A183 80 aa10.07□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 IGLV8-61A0A075B6I0 122 aa10.06□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 KRTAP11-1Q8IUC1 163 aa10.06□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 APLNQ9ULZ1 77 aa10.06□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 C1orf64Q8NEQ6 169 aa10.05□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 NUPR2A6NF83 97 aa10.04□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 PSCAO43653 123 aa10.04□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 PSPHP1O15172 72 aa10.03□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 VPS13DQ5THJ4 4388 aa10.03□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.03□□□□□ -0.8
MSH5-SAPCD1-208ENST00000498473 CHTF8P0CG12 524 aa10.02□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 C4orf48Q5BLP8 95 aa10.02□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 PHF5AQ7RTV0 110 aaKnown RBP10.02□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 NDUFS5O43920 106 aa10.01□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 FRAS1Q86XX4 4008 aa10.01□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 CYP4F30PQ9H0H9 118 aa10.01□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 UBE2DNLQ8IWF7 75 aa10□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 SACSQ9NZJ4 4579 aa9.99□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 DEFB116Q30KQ4 102 aa9.99□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 A0A087WSZ3 146 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 LRCOL1A6NCL2 159 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 HCG22E2RYF7 251 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 LY6G6CO95867 125 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 DNAH2Q9P225 4427 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 UBE2AP49459 152 aa9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 ZCCHC13Q8WW36 166 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 C14orf177Q52M58 125 aa9.97□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 SPRR1BP22528 89 aa9.97□□□□□ -0.81
MSH5-SAPCD1-208ENST00000498473 H0Y9J4 135 aa9.96□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 C9orf163Q8N9P6 203 aa9.95□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 A8MUN3 132 aa9.94□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 SRRM2Q9UQ35 2752 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 Q5VV11 94 aa9.93□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 ATP11AUNQ6ZP68 121 aa9.92□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 RYR3Q15413 4870 aa9.92□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 RPL37AP61513 92 aaKnown RBP9.92□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 PANO1I0J062 215 aa9.91□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 WFDC13Q8IUB5 93 aa9.9□□□□□ -0.82
MSH5-SAPCD1-208ENST00000498473 KRTAP29-1A8MX34 341 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 ALMS1Q8TCU4 4167 aa9.89□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 Q6ZRN7 208 aaPredicted RBP9.88□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 NBDYA0A0U1RRE5 68 aa9.88□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 LIMD2Q9BT23 127 aa9.88□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 KRTAP13-1Q8IUC0 172 aa9.87□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 RYR2Q92736 4967 aa9.87□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 LINC00472Q9H8W2 130 aa9.87□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 A8MU10 97 aa9.86□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 NDUFB1O75438 58 aa9.86□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 A6NN06 94 aa9.85□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 CHKB-CPT1BH3BT56 60 aa9.84□□□□□ -0.83
MSH5-SAPCD1-208ENST00000498473 A8MWP4 228 aa9.82□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 C7orf65Q6ZTY9 151 aa9.8□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 CASC2Q6XLA1 102 aa9.8□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 SPTSSBQ8NFR3 76 aa9.8□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.8□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 Q8N9P0 234 aaPredicted RBP9.79□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 SPACA4Q8TDM5 124 aa9.79□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 Q75L30 129 aa9.78□□□□□ -0.84
MSH5-SAPCD1-208ENST00000498473 MP68P56378 58 aa9.77□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 LCA10Q71F78 164 aa9.76□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 DNAH6Q9C0G6 4158 aa9.76□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 C8orf87E5RJ46 101 aa9.76□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 HECTD4Q9Y4D8 3996 aa9.76□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 FAT2Q9NYQ8 4349 aa9.76□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 LINC00208Q96KT6 92 aa9.75□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 PRR4Q16378 134 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms