RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 FP248Q71RG6 208 aaPredicted RBP11.69□□□□□ -0.54
COL27A1-207ENST00000494090 PCNTO95613 3336 aa11.67□□□□□ -0.54
COL27A1-207ENST00000494090 LINC00483Q53H64 154 aa11.67□□□□□ -0.54
COL27A1-207ENST00000494090 DMAC1Q96GE9 116 aa11.64□□□□□ -0.55
COL27A1-207ENST00000494090 S4R3F8 94 aa11.64□□□□□ -0.55
COL27A1-207ENST00000494090 HTTP42858 3142 aa11.63□□□□□ -0.55
COL27A1-207ENST00000494090 SEC61BP60468 96 aaKnown RBP11.61□□□□□ -0.55
COL27A1-207ENST00000494090 CFAP46Q8IYW2 2715 aa11.59□□□□□ -0.55
COL27A1-207ENST00000494090 KRTAP1-5Q9BYS1 174 aa11.58□□□□□ -0.56
COL27A1-207ENST00000494090 Q5W150 140 aa11.58□□□□□ -0.56
COL27A1-207ENST00000494090 TRANK1O15050 2925 aa11.57□□□□□ -0.56
COL27A1-207ENST00000494090 STAB1Q9NY15 2570 aa11.55□□□□□ -0.56
COL27A1-207ENST00000494090 SPINK7P58062 85 aa11.54□□□□□ -0.56
COL27A1-207ENST00000494090 Q5VV11 94 aa11.54□□□□□ -0.56
COL27A1-207ENST00000494090 LCE6AA0A183 80 aa11.53□□□□□ -0.56
COL27A1-207ENST00000494090 CENPEQ02224 2701 aa11.52□□□□□ -0.57
COL27A1-207ENST00000494090 Q5VSD8 79 aa11.49□□□□□ -0.57
COL27A1-207ENST00000494090 KRTAP4-16G5E9R7 235 aaPredicted RBP11.47□□□□□ -0.57
COL27A1-207ENST00000494090 R4GN34 69 aa11.45□□□□□ -0.58
COL27A1-207ENST00000494090 OXTP01178 125 aa11.45□□□□□ -0.58
COL27A1-207ENST00000494090 CFAP54Q96N23 3096 aa11.44□□□□□ -0.58
COL27A1-207ENST00000494090 RANBP2P49792 3224 aaKnown RBP11.44□□□□□ -0.58
COL27A1-207ENST00000494090 MGAQ8IWI9 3026 aa11.43□□□□□ -0.58
COL27A1-207ENST00000494090 KRTAP10-1P60331 282 aa11.42□□□□□ -0.58
COL27A1-207ENST00000494090 ZNF292O60281 2723 aa11.42□□□□□ -0.58
COL27A1-207ENST00000494090 A0A0C4DFX4 3053 aa11.42□□□□□ -0.58
COL27A1-207ENST00000494090 CHD6Q8TD26 2715 aa11.41□□□□□ -0.58
COL27A1-207ENST00000494090 AKAP13Q12802 2813 aa11.38□□□□□ -0.59
COL27A1-207ENST00000494090 Q6ZR54 194 aa11.35□□□□□ -0.59
COL27A1-207ENST00000494090 KRTAP29-1A8MX34 341 aaPredicted RBP11.35□□□□□ -0.59
COL27A1-207ENST00000494090 KRTAP10-2P60368 255 aa11.34□□□□□ -0.59
COL27A1-207ENST00000494090 PRAC1Q96KF2 57 aa11.33□□□□□ -0.6
COL27A1-207ENST00000494090 RPL37P61927 97 aaKnown RBP11.29□□□□□ -0.6
COL27A1-207ENST00000494090 MKI67P46013 3256 aaKnown RBP11.28□□□□□ -0.6
COL27A1-207ENST00000494090 GCN1Q92616 2671 aaKnown RBP11.27□□□□□ -0.6
COL27A1-207ENST00000494090 PANO1I0J062 215 aa11.27□□□□□ -0.6
COL27A1-207ENST00000494090 TEX15Q9BXT5 2789 aa11.25□□□□□ -0.61
COL27A1-207ENST00000494090 LAMA3Q16787 3333 aa11.23□□□□□ -0.61
COL27A1-207ENST00000494090 FLG2Q5D862 2391 aaPredicted RBP11.23□□□□□ -0.61
COL27A1-207ENST00000494090 UNC79Q9P2D8 2635 aa11.22□□□□□ -0.61
COL27A1-207ENST00000494090 TEP1Q99973 2627 aaKnown RBP11.2□□□□□ -0.62
COL27A1-207ENST00000494090 H1FX-AS1Q4G0G2 97 aa11.19□□□□□ -0.62
COL27A1-207ENST00000494090 M0QZ58 72 aa11.19□□□□□ -0.62
COL27A1-207ENST00000494090 NBEAL1Q6ZS30 2694 aa11.19□□□□□ -0.62
COL27A1-207ENST00000494090 ROMO1P60602 79 aa11.17□□□□□ -0.62
COL27A1-207ENST00000494090 LAMA2P24043 3122 aaKnown RBP11.17□□□□□ -0.62
COL27A1-207ENST00000494090 WDFY4Q6ZS81 3184 aa11.14□□□□□ -0.63
COL27A1-207ENST00000494090 A0A0A0MQY5 61 aa11.14□□□□□ -0.63
COL27A1-207ENST00000494090 RPS29P62273 56 aaKnown RBP11.13□□□□□ -0.63
COL27A1-207ENST00000494090 ASB16-AS1Q495Z4 193 aa11.12□□□□□ -0.63
COL27A1-207ENST00000494090 SETXQ7Z333 2677 aaKnown RBP11.1□□□□□ -0.63
COL27A1-207ENST00000494090 A0A087X002 238 aa11.09□□□□□ -0.63
COL27A1-207ENST00000494090 COL6A5A8TX70 2615 aa11.09□□□□□ -0.63
COL27A1-207ENST00000494090 PLAC4Q8WY50 150 aa11.08□□□□□ -0.64
COL27A1-207ENST00000494090 KRTAP11-1Q8IUC1 163 aa11.07□□□□□ -0.64
COL27A1-207ENST00000494090 NOTCH2NLQ7Z3S9 236 aa11.07□□□□□ -0.64
COL27A1-207ENST00000494090 KRTAP7-1Q8IUC3 87 aa11.06□□□□□ -0.64
COL27A1-207ENST00000494090 NBEAL2Q6ZNJ1 2754 aa11.06□□□□□ -0.64
COL27A1-207ENST00000494090 TRIOO75962 3097 aa11.04□□□□□ -0.64
COL27A1-207ENST00000494090 ADM2Q7Z4H4 148 aa11.04□□□□□ -0.64
COL27A1-207ENST00000494090 IGSF10Q6WRI0 2623 aa11.04□□□□□ -0.64
COL27A1-207ENST00000494090 BRCA2P51587 3418 aa11.04□□□□□ -0.64
COL27A1-207ENST00000494090 NOTCH1P46531 2555 aa11.04□□□□□ -0.64
COL27A1-207ENST00000494090 DSPP15924 2871 aaKnown RBP11.03□□□□□ -0.64
COL27A1-207ENST00000494090 Q6ZRN7 208 aaPredicted RBP11.02□□□□□ -0.65
COL27A1-207ENST00000494090 FRYQ5TBA9 3013 aa10.98□□□□□ -0.65
COL27A1-207ENST00000494090 DMBT1Q9UGM3 2413 aaPredicted RBP10.98□□□□□ -0.65
COL27A1-207ENST00000494090 SPATA8Q6RVD6 105 aa10.97□□□□□ -0.65
COL27A1-207ENST00000494090 H3BS24 57 aa10.96□□□□□ -0.66
COL27A1-207ENST00000494090 PRUNE2Q8WUY3 3088 aa10.94□□□□□ -0.66
COL27A1-207ENST00000494090 MAP1AP78559 2803 aaPredicted RBP10.93□□□□□ -0.66
COL27A1-207ENST00000494090 UNC80Q8N2C7 3258 aa10.92□□□□□ -0.66
COL27A1-207ENST00000494090 KRTAP13-1Q8IUC0 172 aa10.92□□□□□ -0.66
COL27A1-207ENST00000494090 BAHCC1Q9P281 2608 aa10.91□□□□□ -0.66
COL27A1-207ENST00000494090 VPS13AQ96RL7 3174 aa10.91□□□□□ -0.66
COL27A1-207ENST00000494090 UBR5O95071 2799 aaPredicted RBP10.9□□□□□ -0.67
COL27A1-207ENST00000494090 XIRP2A4UGR9 3374 aa10.84□□□□□ -0.67
COL27A1-207ENST00000494090 A6NN06 94 aa10.81□□□□□ -0.68
COL27A1-207ENST00000494090 KRTAP13-2Q52LG2 175 aa10.81□□□□□ -0.68
COL27A1-207ENST00000494090 KRTAP21-3Q3LHN1 58 aa10.79□□□□□ -0.68
COL27A1-207ENST00000494090 NSD1Q96L73 2696 aaPredicted RBP10.78□□□□□ -0.68
COL27A1-207ENST00000494090 STAB2Q8WWQ8 2551 aa10.76□□□□□ -0.69
COL27A1-207ENST00000494090 ITPR2Q14571 2701 aa10.75□□□□□ -0.69
COL27A1-207ENST00000494090 A8MUU9 505 aa10.75□□□□□ -0.69
COL27A1-207ENST00000494090 ITPR1Q14643 2758 aa10.73□□□□□ -0.69
COL27A1-207ENST00000494090 CDH23Q9H251 3354 aa10.72□□□□□ -0.69
COL27A1-207ENST00000494090 KALRNO60229 2985 aa10.71□□□□□ -0.69
COL27A1-207ENST00000494090 A8MU10 97 aa10.65□□□□□ -0.71
COL27A1-207ENST00000494090 KRTAP25-1Q3LHN0 102 aa10.64□□□□□ -0.71
COL27A1-207ENST00000494090 CELSR3Q9NYQ7 3312 aa10.64□□□□□ -0.71
COL27A1-207ENST00000494090 C20orf166-AS1Q96NR2 134 aa10.63□□□□□ -0.71
COL27A1-207ENST00000494090 KMT2BQ9UMN6 2715 aaPredicted RBP10.62□□□□□ -0.71
COL27A1-207ENST00000494090 FLNCQ14315 2725 aa10.61□□□□□ -0.71
COL27A1-207ENST00000494090 ATMQ13315 3056 aa10.59□□□□□ -0.71
COL27A1-207ENST00000494090 FREM2Q5SZK8 3169 aa10.58□□□□□ -0.72
COL27A1-207ENST00000494090 NBEAQ8NFP9 2946 aa10.57□□□□□ -0.72
COL27A1-207ENST00000494090 LAMA1P25391 3075 aa10.56□□□□□ -0.72
COL27A1-207ENST00000494090 LRBAP50851 2863 aa10.52□□□□□ -0.72
COL27A1-207ENST00000494090 TACC2O95359 2948 aa10.52□□□□□ -0.73
COL27A1-207ENST00000494090 UTP20O75691 2785 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms