RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 ITPR3Q14573 2671 aa12.25□□□□□ -0.45
RNF40-203ENST00000493683 PRRC2CQ9Y520 2896 aaKnown RBP12.24□□□□□ -0.45
RNF40-203ENST00000493683 STAB1Q9NY15 2570 aa12.24□□□□□ -0.45
RNF40-203ENST00000493683 A0A0C4DFX4 3053 aa12.23□□□□□ -0.45
RNF40-203ENST00000493683 SPINK7P58062 85 aa12.18□□□□□ -0.46
RNF40-203ENST00000493683 M0R2T5 61 aa12.17□□□□□ -0.46
RNF40-203ENST00000493683 C5orf42Q9H799 3197 aa12.17□□□□□ -0.46
RNF40-203ENST00000493683 A0A0A0MQY5 61 aa12.17□□□□□ -0.46
RNF40-203ENST00000493683 PRAC1Q96KF2 57 aa12.16□□□□□ -0.46
RNF40-203ENST00000493683 ASB16-AS1Q495Z4 193 aa12.13□□□□□ -0.47
RNF40-203ENST00000493683 KRTAP26-1Q6PEX3 210 aa12.13□□□□□ -0.47
RNF40-203ENST00000493683 RPL37P61927 97 aaKnown RBP12.1□□□□□ -0.47
RNF40-203ENST00000493683 R4GN34 69 aa12.09□□□□□ -0.47
RNF40-203ENST00000493683 Q6ZR54 194 aa12.07□□□□□ -0.48
RNF40-203ENST00000493683 ROMO1P60602 79 aa12.06□□□□□ -0.48
RNF40-203ENST00000493683 SEC61BP60468 96 aaKnown RBP12.06□□□□□ -0.48
RNF40-203ENST00000493683 H3BS24 57 aa12.01□□□□□ -0.49
RNF40-203ENST00000493683 H1FX-AS1Q4G0G2 97 aa12.01□□□□□ -0.49
RNF40-203ENST00000493683 FLG2Q5D862 2391 aaPredicted RBP12□□□□□ -0.49
RNF40-203ENST00000493683 BRCA2P51587 3418 aa12□□□□□ -0.49
RNF40-203ENST00000493683 CFAP46Q8IYW2 2715 aa12□□□□□ -0.49
RNF40-203ENST00000493683 OXTP01178 125 aa11.98□□□□□ -0.49
RNF40-203ENST00000493683 KRTAP1-5Q9BYS1 174 aa11.98□□□□□ -0.49
RNF40-203ENST00000493683 HTTP42858 3142 aa11.97□□□□□ -0.49
RNF40-203ENST00000493683 KRTAP4-16G5E9R7 235 aaPredicted RBP11.96□□□□□ -0.49
RNF40-203ENST00000493683 KRTAP29-1A8MX34 341 aaPredicted RBP11.96□□□□□ -0.5
RNF40-203ENST00000493683 CHD7Q9P2D1 2997 aa11.95□□□□□ -0.5
RNF40-203ENST00000493683 MKI67P46013 3256 aaKnown RBP11.93□□□□□ -0.5
RNF40-203ENST00000493683 LCE6AA0A183 80 aa11.88□□□□□ -0.51
RNF40-203ENST00000493683 Q5VSD8 79 aa11.87□□□□□ -0.51
RNF40-203ENST00000493683 NBEAL1Q6ZS30 2694 aa11.83□□□□□ -0.52
RNF40-203ENST00000493683 M0QZ58 72 aa11.83□□□□□ -0.52
RNF40-203ENST00000493683 AKAP13Q12802 2813 aa11.82□□□□□ -0.52
RNF40-203ENST00000493683 KRTAP10-1P60331 282 aa11.82□□□□□ -0.52
RNF40-203ENST00000493683 LAMA3Q16787 3333 aa11.81□□□□□ -0.52
RNF40-203ENST00000493683 CENPEQ02224 2701 aa11.8□□□□□ -0.52
RNF40-203ENST00000493683 TEP1Q99973 2627 aaKnown RBP11.79□□□□□ -0.52
RNF40-203ENST00000493683 SPATA8Q6RVD6 105 aa11.79□□□□□ -0.52
RNF40-203ENST00000493683 LAMA2P24043 3122 aaKnown RBP11.79□□□□□ -0.52
RNF40-203ENST00000493683 UNC80Q8N2C7 3258 aa11.75□□□□□ -0.53
RNF40-203ENST00000493683 SETXQ7Z333 2677 aaKnown RBP11.73□□□□□ -0.53
RNF40-203ENST00000493683 KRTAP10-2P60368 255 aa11.73□□□□□ -0.53
RNF40-203ENST00000493683 RANBP2P49792 3224 aaKnown RBP11.72□□□□□ -0.53
RNF40-203ENST00000493683 RPS29P62273 56 aaKnown RBP11.72□□□□□ -0.53
RNF40-203ENST00000493683 PANO1I0J062 215 aa11.71□□□□□ -0.53
RNF40-203ENST00000493683 TEX15Q9BXT5 2789 aa11.71□□□□□ -0.53
RNF40-203ENST00000493683 CHD6Q8TD26 2715 aa11.71□□□□□ -0.54
RNF40-203ENST00000493683 ADM2Q7Z4H4 148 aa11.69□□□□□ -0.54
RNF40-203ENST00000493683 CHD9Q3L8U1 2897 aa11.66□□□□□ -0.54
RNF40-203ENST00000493683 COL6A5A8TX70 2615 aa11.65□□□□□ -0.54
RNF40-203ENST00000493683 PLAC4Q8WY50 150 aa11.64□□□□□ -0.55
RNF40-203ENST00000493683 UNC79Q9P2D8 2635 aa11.62□□□□□ -0.55
RNF40-203ENST00000493683 DMBT1Q9UGM3 2413 aaPredicted RBP11.62□□□□□ -0.55
RNF40-203ENST00000493683 A0A087X002 238 aa11.59□□□□□ -0.55
RNF40-203ENST00000493683 NOTCH1P46531 2555 aa11.59□□□□□ -0.55
RNF40-203ENST00000493683 CFAP54Q96N23 3096 aa11.59□□□□□ -0.55
RNF40-203ENST00000493683 DNAH14Q0VDD8 3507 aa11.58□□□□□ -0.56
RNF40-203ENST00000493683 A6NN06 94 aa11.57□□□□□ -0.56
RNF40-203ENST00000493683 CDH23Q9H251 3354 aa11.55□□□□□ -0.56
RNF40-203ENST00000493683 KRTAP25-1Q3LHN0 102 aa11.53□□□□□ -0.56
RNF40-203ENST00000493683 NOTCH2NLQ7Z3S9 236 aa11.53□□□□□ -0.56
RNF40-203ENST00000493683 GCN1Q92616 2671 aaKnown RBP11.47□□□□□ -0.57
RNF40-203ENST00000493683 STAB2Q8WWQ8 2551 aa11.47□□□□□ -0.57
RNF40-203ENST00000493683 KRTAP16-1A8MUX0 517 aa11.44□□□□□ -0.58
RNF40-203ENST00000493683 XIRP2A4UGR9 3374 aa11.43□□□□□ -0.58
RNF40-203ENST00000493683 Q6ZRN7 208 aaPredicted RBP11.41□□□□□ -0.58
RNF40-203ENST00000493683 PRUNE2Q8WUY3 3088 aa11.4□□□□□ -0.58
RNF40-203ENST00000493683 KRTAP13-1Q8IUC0 172 aa11.39□□□□□ -0.59
RNF40-203ENST00000493683 KRTAP11-1Q8IUC1 163 aa11.38□□□□□ -0.59
RNF40-203ENST00000493683 TRANK1O15050 2925 aa11.38□□□□□ -0.59
RNF40-203ENST00000493683 ZNF292O60281 2723 aa11.36□□□□□ -0.59
RNF40-203ENST00000493683 KRTAP7-1Q8IUC3 87 aa11.36□□□□□ -0.59
RNF40-203ENST00000493683 A8MUU9 505 aa11.35□□□□□ -0.59
RNF40-203ENST00000493683 TRIOO75962 3097 aa11.33□□□□□ -0.6
RNF40-203ENST00000493683 VCANP13611 3396 aa11.32□□□□□ -0.6
RNF40-203ENST00000493683 A8MU10 97 aa11.31□□□□□ -0.6
RNF40-203ENST00000493683 KRTAP13-2Q52LG2 175 aa11.28□□□□□ -0.6
RNF40-203ENST00000493683 CELSR3Q9NYQ7 3312 aa11.27□□□□□ -0.6
RNF40-203ENST00000493683 NSD1Q96L73 2696 aaPredicted RBP11.26□□□□□ -0.61
RNF40-203ENST00000493683 SZT2Q5T011 3432 aa11.22□□□□□ -0.61
RNF40-203ENST00000493683 VPS13AQ96RL7 3174 aa11.22□□□□□ -0.61
RNF40-203ENST00000493683 MAP1AP78559 2803 aaPredicted RBP11.22□□□□□ -0.61
RNF40-203ENST00000493683 BAHCC1Q9P281 2608 aa11.22□□□□□ -0.61
RNF40-203ENST00000493683 LAMA1P25391 3075 aa11.21□□□□□ -0.61
RNF40-203ENST00000493683 UBR5O95071 2799 aaPredicted RBP11.21□□□□□ -0.62
RNF40-203ENST00000493683 C20orf166-AS1Q96NR2 134 aa11.18□□□□□ -0.62
RNF40-203ENST00000493683 MGAQ8IWI9 3026 aa11.15□□□□□ -0.62
RNF40-203ENST00000493683 NBEAL2Q6ZNJ1 2754 aa11.15□□□□□ -0.62
RNF40-203ENST00000493683 WDFY4Q6ZS81 3184 aa11.15□□□□□ -0.63
RNF40-203ENST00000493683 SPEGQ15772 3267 aa11.13□□□□□ -0.63
RNF40-203ENST00000493683 IGSF10Q6WRI0 2623 aa11.11□□□□□ -0.63
RNF40-203ENST00000493683 TNP1P09430 55 aa11.1□□□□□ -0.63
RNF40-203ENST00000493683 NDUFAF8A1L188 74 aa11.08□□□□□ -0.64
RNF40-203ENST00000493683 NBEAQ8NFP9 2946 aa11.05□□□□□ -0.64
RNF40-203ENST00000493683 FREM2Q5SZK8 3169 aa11.05□□□□□ -0.64
RNF40-203ENST00000493683 KRTAP21-3Q3LHN1 58 aa11.04□□□□□ -0.64
RNF40-203ENST00000493683 ITPR2Q14571 2701 aa11.03□□□□□ -0.64
RNF40-203ENST00000493683 PP632Q6XCG6 107 aa10.99□□□□□ -0.65
RNF40-203ENST00000493683 DSPP15924 2871 aaKnown RBP10.99□□□□□ -0.65
RNF40-203ENST00000493683 FRYLO94915 3013 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms