RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 KRTAP13-1Q8IUC0 172 aa6.69□□□□□ -1.34
USP4-214ENST00000491791 SPACA4Q8TDM5 124 aa6.69□□□□□ -1.34
USP4-214ENST00000491791 A0A087WVE0 104 aa6.68□□□□□ -1.34
USP4-214ENST00000491791 CHTF8P0CG12 524 aa6.68□□□□□ -1.34
USP4-214ENST00000491791 FAM19A1Q7Z5A9 133 aa6.68□□□□□ -1.34
USP4-214ENST00000491791 SERP2Q8N6R1 65 aa6.68□□□□□ -1.34
USP4-214ENST00000491791 CRYGAP11844 174 aa6.67□□□□□ -1.34
USP4-214ENST00000491791 HAMPP81172 84 aa6.67□□□□□ -1.34
USP4-214ENST00000491791 PHF5AQ7RTV0 110 aaKnown RBP6.67□□□□□ -1.34
USP4-214ENST00000491791 KRTAP11-1Q8IUC1 163 aa6.67□□□□□ -1.34
USP4-214ENST00000491791 NREPQ16612 68 aa6.66□□□□□ -1.34
USP4-214ENST00000491791 SMIM20Q8N5G0 67 aa6.66□□□□□ -1.34
USP4-214ENST00000491791 PCLOQ9Y6V0 5065 aa6.65□□□□□ -1.34
USP4-214ENST00000491791 PANO1I0J062 215 aa6.65□□□□□ -1.34
USP4-214ENST00000491791 KIAA1109Q2LD37 5005 aa6.65□□□□□ -1.35
USP4-214ENST00000491791 PRLHP81277 87 aa6.64□□□□□ -1.35
USP4-214ENST00000491791 PLAC8Q9NZF1 115 aa6.64□□□□□ -1.35
USP4-214ENST00000491791 A0A1B0GVY2 172 aa6.63□□□□□ -1.35
USP4-214ENST00000491791 F8WEM9 126 aa6.63□□□□□ -1.35
USP4-214ENST00000491791 C1orf134Q5TEV5 83 aa6.63□□□□□ -1.35
USP4-214ENST00000491791 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.63□□□□□ -1.35
USP4-214ENST00000491791 DNAH6Q9C0G6 4158 aa6.63□□□□□ -1.35
USP4-214ENST00000491791 DNAH17Q9UFH2 4485 aa6.62□□□□□ -1.35
USP4-214ENST00000491791 RTL8CO15255 209 aa6.62□□□□□ -1.35
USP4-214ENST00000491791 HIGD2AQ9BW72 106 aa6.62□□□□□ -1.35
USP4-214ENST00000491791 RYR1P21817 5038 aa6.61□□□□□ -1.35
USP4-214ENST00000491791 TRAV7A0A075B6U4 112 aa6.61□□□□□ -1.35
USP4-214ENST00000491791 C9orf153Q5TBE3 101 aa6.61□□□□□ -1.35
USP4-214ENST00000491791 IGFL1Q6UW32 110 aa6.61□□□□□ -1.35
USP4-214ENST00000491791 PKHD1P08F94 4074 aa6.61□□□□□ -1.35
USP4-214ENST00000491791 BPY2O14599 106 aa6.6□□□□□ -1.35
USP4-214ENST00000491791 IGKV4-1P06312 121 aa6.6□□□□□ -1.35
USP4-214ENST00000491791 LINC00483Q53H64 154 aa6.6□□□□□ -1.35
USP4-214ENST00000491791 UBE2AP49459 152 aa6.59□□□□□ -1.35
USP4-214ENST00000491791 RPL37AP61513 92 aaKnown RBP6.59□□□□□ -1.35
USP4-214ENST00000491791 DNAH2Q9P225 4427 aa6.58□□□□□ -1.36
USP4-214ENST00000491791 FAT2Q9NYQ8 4349 aa6.57□□□□□ -1.36
USP4-214ENST00000491791 IGLV5-52A0A0A0MRZ9 124 aa6.57□□□□□ -1.36
USP4-214ENST00000491791 DSCR10P59022 87 aa6.55□□□□□ -1.36
USP4-214ENST00000491791 SCXQ7RTU7 201 aa6.55□□□□□ -1.36
USP4-214ENST00000491791 DPH3Q96FX2 82 aa6.55□□□□□ -1.36
USP4-214ENST00000491791 ZNF706Q9Y5V0 76 aaPredicted RBP6.55□□□□□ -1.36
USP4-214ENST00000491791 DNAH11Q96DT5 4516 aa6.53□□□□□ -1.36
USP4-214ENST00000491791 ZNF861PO60384 105 aa6.53□□□□□ -1.36
USP4-214ENST00000491791 KLKP1Q107X0 134 aa6.53□□□□□ -1.36
USP4-214ENST00000491791 PSORS1C2Q9UIG4 136 aa6.53□□□□□ -1.36
USP4-214ENST00000491791 PKD1P98161 4303 aa6.52□□□□□ -1.37
USP4-214ENST00000491791 CDK2AP2O75956 126 aa6.52□□□□□ -1.37
USP4-214ENST00000491791 TMEM258P61165 79 aa6.52□□□□□ -1.37
USP4-214ENST00000491791 OCR1Q9BZK8 76 aa6.52□□□□□ -1.37
USP4-214ENST00000491791 SS18L2Q9UHA2 77 aa6.51□□□□□ -1.37
USP4-214ENST00000491791 A0A087WSZ3 146 aa6.5□□□□□ -1.37
USP4-214ENST00000491791 Q8N9L7 120 aa6.5□□□□□ -1.37
USP4-214ENST00000491791 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
USP4-214ENST00000491791 DYNC1H1Q14204 4646 aaKnown RBP6.49□□□□□ -1.37
USP4-214ENST00000491791 Q6ZSA8 131 aa6.49□□□□□ -1.37
USP4-214ENST00000491791 KRTAP4-5Q9BYR2 181 aa6.49□□□□□ -1.37
USP4-214ENST00000491791 RPS28P62857 69 aaKnown RBP6.48□□□□□ -1.37
USP4-214ENST00000491791 CYSTM1Q9H1C7 97 aa6.48□□□□□ -1.37
USP4-214ENST00000491791 ABCA13Q86UQ4 5058 aa6.48□□□□□ -1.37
USP4-214ENST00000491791 A0A0G2JQZ4 141 aa6.47□□□□□ -1.37
USP4-214ENST00000491791 J3KT08 172 aa6.47□□□□□ -1.37
USP4-214ENST00000491791 NDUFC1O43677 76 aa6.47□□□□□ -1.37
USP4-214ENST00000491791 IGLV7-43P04211 117 aa6.47□□□□□ -1.37
USP4-214ENST00000491791 DNAH8Q96JB1 4490 aa6.47□□□□□ -1.37
USP4-214ENST00000491791 K7EQZ3 153 aa6.46□□□□□ -1.38
USP4-214ENST00000491791 C20orf197Q8N268 126 aa6.46□□□□□ -1.38
USP4-214ENST00000491791 KRTAP10-2P60368 255 aa6.45□□□□□ -1.38
USP4-214ENST00000491791 Q8N1X5 172 aa6.45□□□□□ -1.38
USP4-214ENST00000491791 HSPG2P98160 4391 aa6.44□□□□□ -1.38
USP4-214ENST00000491791 HCG22E2RYF7 251 aa6.44□□□□□ -1.38
USP4-214ENST00000491791 H7BZZ5 65 aa6.44□□□□□ -1.38
USP4-214ENST00000491791 PRR15Q8IV56 129 aa6.44□□□□□ -1.38
USP4-214ENST00000491791 A8MWP4 228 aa6.43□□□□□ -1.38
USP4-214ENST00000491791 KRTAP29-1A8MX34 341 aaPredicted RBP6.43□□□□□ -1.38
USP4-214ENST00000491791 CIRBP-AS1Q8TBR5 109 aa6.43□□□□□ -1.38
USP4-214ENST00000491791 A0A0U1RQV1 116 aa6.42□□□□□ -1.38
USP4-214ENST00000491791 CD164Q04900 197 aa6.42□□□□□ -1.38
USP4-214ENST00000491791 TMEM254Q8TBM7 123 aa6.42□□□□□ -1.38
USP4-214ENST00000491791 Q96NJ1 140 aa6.41□□□□□ -1.38
USP4-214ENST00000491791 FAM30AQ9NZY2 134 aa6.41□□□□□ -1.38
USP4-214ENST00000491791 SSBP3-AS1Q7Z2R9 100 aa6.4□□□□□ -1.38
USP4-214ENST00000491791 LRP1BQ9NZR2 4599 aa6.4□□□□□ -1.39
USP4-214ENST00000491791 ASB16-AS1Q495Z4 193 aa6.39□□□□□ -1.39
USP4-214ENST00000491791 C5orf47Q569G3 176 aa6.39□□□□□ -1.39
USP4-214ENST00000491791 DMBT1Q9UGM3 2413 aaPredicted RBP6.38□□□□□ -1.39
USP4-214ENST00000491791 IGLV9-49A0A0B4J1Y8 123 aa6.38□□□□□ -1.39
USP4-214ENST00000491791 ATP5EP56381 51 aaPredicted RBP6.38□□□□□ -1.39
USP4-214ENST00000491791 KRTAP10-1P60331 282 aa6.38□□□□□ -1.39
USP4-214ENST00000491791 DNAH5Q8TE73 4624 aa6.38□□□□□ -1.39
USP4-214ENST00000491791 MOBPQ13875 183 aa6.37□□□□□ -1.39
USP4-214ENST00000491791 FAM229BQ4G0N7 80 aa6.37□□□□□ -1.39
USP4-214ENST00000491791 ZCCHC13Q8WW36 166 aaKnown RBP6.37□□□□□ -1.39
USP4-214ENST00000491791 NDUFB1O75438 58 aa6.36□□□□□ -1.39
USP4-214ENST00000491791 SNURFQ9Y675 71 aa6.36□□□□□ -1.39
USP4-214ENST00000491791 APOBP04114 4563 aaKnown RBP6.35□□□□□ -1.39
USP4-214ENST00000491791 FAM236DA0A1B0GTK5 79 aa6.35□□□□□ -1.39
USP4-214ENST00000491791 FAM236CP0DP71 79 aa6.35□□□□□ -1.39
USP4-214ENST00000491791 DEFB116Q30KQ4 102 aa6.35□□□□□ -1.39
USP4-214ENST00000491791 SRRM2Q9UQ35 2752 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms