RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 Q8NDZ9 215 aa7.82□□□□□ -1.16
COL6A3-212ENST00000491769 ATRQ13535 2644 aa7.82□□□□□ -1.16
COL6A3-212ENST00000491769 RPL37P61927 97 aaKnown RBP7.82□□□□□ -1.16
COL6A3-212ENST00000491769 LINC00472Q9H8W2 130 aa7.81□□□□□ -1.16
COL6A3-212ENST00000491769 H3BS24 57 aa7.81□□□□□ -1.16
COL6A3-212ENST00000491769 PRAC1Q96KF2 57 aa7.81□□□□□ -1.16
COL6A3-212ENST00000491769 SPRR1BP22528 89 aa7.8□□□□□ -1.16
COL6A3-212ENST00000491769 MAST4O15021 2626 aa7.79□□□□□ -1.16
COL6A3-212ENST00000491769 GOLGB1Q14789 3259 aaKnown RBP7.78□□□□□ -1.16
COL6A3-212ENST00000491769 ROMO1P60602 79 aa7.77□□□□□ -1.17
COL6A3-212ENST00000491769 FLG2Q5D862 2391 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-212ENST00000491769 FLNAP21333 2647 aaKnown RBP7.75□□□□□ -1.17
COL6A3-212ENST00000491769 KRTAP26-1Q6PEX3 210 aa7.74□□□□□ -1.17
COL6A3-212ENST00000491769 ITPR3Q14573 2671 aa7.72□□□□□ -1.17
COL6A3-212ENST00000491769 Q6ZR54 194 aa7.72□□□□□ -1.17
COL6A3-212ENST00000491769 HELZ2Q9BYK8 2649 aaKnown RBP7.72□□□□□ -1.17
COL6A3-212ENST00000491769 SPATA8Q6RVD6 105 aa7.71□□□□□ -1.17
COL6A3-212ENST00000491769 PANO1I0J062 215 aa7.7□□□□□ -1.18
COL6A3-212ENST00000491769 A0A087X002 238 aa7.68□□□□□ -1.18
COL6A3-212ENST00000491769 STAB1Q9NY15 2570 aa7.66□□□□□ -1.18
COL6A3-212ENST00000491769 Q5VV11 94 aa7.63□□□□□ -1.19
COL6A3-212ENST00000491769 C20orf166-AS1Q96NR2 134 aa7.61□□□□□ -1.19
COL6A3-212ENST00000491769 A8MUU9 505 aa7.59□□□□□ -1.19
COL6A3-212ENST00000491769 CFAP46Q8IYW2 2715 aa7.56□□□□□ -1.2
COL6A3-212ENST00000491769 UTRNP46939 3433 aa7.55□□□□□ -1.2
COL6A3-212ENST00000491769 CYSTM1Q9H1C7 97 aa7.5□□□□□ -1.21
COL6A3-212ENST00000491769 NOTCH2NLQ7Z3S9 236 aa7.48□□□□□ -1.21
COL6A3-212ENST00000491769 Q5XG85 94 aa7.48□□□□□ -1.21
COL6A3-212ENST00000491769 PRRC2CQ9Y520 2896 aaKnown RBP7.45□□□□□ -1.22
COL6A3-212ENST00000491769 RPS29P62273 56 aaKnown RBP7.45□□□□□ -1.22
COL6A3-212ENST00000491769 KRTAP4-16G5E9R7 235 aaPredicted RBP7.44□□□□□ -1.22
COL6A3-212ENST00000491769 SETXQ7Z333 2677 aaKnown RBP7.44□□□□□ -1.22
COL6A3-212ENST00000491769 A8MU10 97 aa7.42□□□□□ -1.22
COL6A3-212ENST00000491769 NBEAL1Q6ZS30 2694 aa7.42□□□□□ -1.22
COL6A3-212ENST00000491769 DMBT1Q9UGM3 2413 aaPredicted RBP7.42□□□□□ -1.22
COL6A3-212ENST00000491769 KRTAP11-1Q8IUC1 163 aa7.41□□□□□ -1.22
COL6A3-212ENST00000491769 TEX15Q9BXT5 2789 aa7.41□□□□□ -1.22
COL6A3-212ENST00000491769 CEP350Q5VT06 3117 aa7.39□□□□□ -1.23
COL6A3-212ENST00000491769 Q6ZRN7 208 aaPredicted RBP7.38□□□□□ -1.23
COL6A3-212ENST00000491769 TEP1Q99973 2627 aaKnown RBP7.38□□□□□ -1.23
COL6A3-212ENST00000491769 KRTAP29-1A8MX34 341 aaPredicted RBP7.37□□□□□ -1.23
COL6A3-212ENST00000491769 TNP1P09430 55 aa7.37□□□□□ -1.23
COL6A3-212ENST00000491769 KRTAP13-2Q52LG2 175 aa7.36□□□□□ -1.23
COL6A3-212ENST00000491769 C5orf42Q9H799 3197 aa7.36□□□□□ -1.23
COL6A3-212ENST00000491769 ASB16-AS1Q495Z4 193 aa7.35□□□□□ -1.23
COL6A3-212ENST00000491769 A0A1B0GVY2 172 aa7.33□□□□□ -1.24
COL6A3-212ENST00000491769 AKAP13Q12802 2813 aa7.32□□□□□ -1.24
COL6A3-212ENST00000491769 KRTAP10-8P60410 259 aa7.3□□□□□ -1.24
COL6A3-212ENST00000491769 BAHCC1Q9P281 2608 aa7.29□□□□□ -1.24
COL6A3-212ENST00000491769 C10orf95Q9H7T3 257 aa7.29□□□□□ -1.24
COL6A3-212ENST00000491769 CHD6Q8TD26 2715 aa7.28□□□□□ -1.24
COL6A3-212ENST00000491769 KRTAP21-3Q3LHN1 58 aa7.28□□□□□ -1.24
COL6A3-212ENST00000491769 STAB2Q8WWQ8 2551 aa7.27□□□□□ -1.25
COL6A3-212ENST00000491769 UNC79Q9P2D8 2635 aa7.26□□□□□ -1.25
COL6A3-212ENST00000491769 DNAH12Q6ZR08 3092 aa7.24□□□□□ -1.25
COL6A3-212ENST00000491769 COL6A5A8TX70 2615 aa7.23□□□□□ -1.25
COL6A3-212ENST00000491769 KRTAP25-1Q3LHN0 102 aa7.22□□□□□ -1.25
COL6A3-212ENST00000491769 KRTAP16-1A8MUX0 517 aa7.21□□□□□ -1.26
COL6A3-212ENST00000491769 CENPEQ02224 2701 aa7.2□□□□□ -1.26
COL6A3-212ENST00000491769 KRTAP7-1Q8IUC3 87 aa7.19□□□□□ -1.26
COL6A3-212ENST00000491769 KRTAP10-10P60014 251 aa7.16□□□□□ -1.26
COL6A3-212ENST00000491769 KRTAP13-1Q8IUC0 172 aa7.15□□□□□ -1.27
COL6A3-212ENST00000491769 XP32Q5T750 250 aa7.09□□□□□ -1.27
COL6A3-212ENST00000491769 NDUFAF8A1L188 74 aa7.09□□□□□ -1.27
COL6A3-212ENST00000491769 NOTCH1P46531 2555 aa7.09□□□□□ -1.28
COL6A3-212ENST00000491769 PCNTO95613 3336 aa7.08□□□□□ -1.28
COL6A3-212ENST00000491769 GCN1Q92616 2671 aaKnown RBP7.07□□□□□ -1.28
COL6A3-212ENST00000491769 PRO2289Q9P1D8 64 aa7.05□□□□□ -1.28
COL6A3-212ENST00000491769 MGAQ8IWI9 3026 aa7□□□□□ -1.29
COL6A3-212ENST00000491769 A6NN06 94 aa6.99□□□□□ -1.29
COL6A3-212ENST00000491769 A0A0C4DFX4 3053 aa6.98□□□□□ -1.29
COL6A3-212ENST00000491769 ITPR2Q14571 2701 aa6.96□□□□□ -1.29
COL6A3-212ENST00000491769 CHD7Q9P2D1 2997 aa6.96□□□□□ -1.29
COL6A3-212ENST00000491769 ZNF292O60281 2723 aa6.96□□□□□ -1.3
COL6A3-212ENST00000491769 TPRXLQ17RH7 258 aa6.96□□□□□ -1.3
COL6A3-212ENST00000491769 PP632Q6XCG6 107 aa6.95□□□□□ -1.3
COL6A3-212ENST00000491769 NBEAL2Q6ZNJ1 2754 aa6.95□□□□□ -1.3
COL6A3-212ENST00000491769 FRYQ5TBA9 3013 aa6.93□□□□□ -1.3
COL6A3-212ENST00000491769 CFAP54Q96N23 3096 aa6.92□□□□□ -1.3
COL6A3-212ENST00000491769 KRTAP1-4P0C5Y4 121 aa6.9□□□□□ -1.3
COL6A3-212ENST00000491769 IGSF10Q6WRI0 2623 aa6.9□□□□□ -1.3
COL6A3-212ENST00000491769 NSD1Q96L73 2696 aaPredicted RBP6.89□□□□□ -1.31
COL6A3-212ENST00000491769 MAP1AP78559 2803 aaPredicted RBP6.87□□□□□ -1.31
COL6A3-212ENST00000491769 P0C880 135 aa6.87□□□□□ -1.31
COL6A3-212ENST00000491769 UBR5O95071 2799 aaPredicted RBP6.86□□□□□ -1.31
COL6A3-212ENST00000491769 KMT2BQ9UMN6 2715 aaPredicted RBP6.81□□□□□ -1.32
COL6A3-212ENST00000491769 CRYBG3Q68DQ2 2970 aa6.79□□□□□ -1.32
COL6A3-212ENST00000491769 MKI67P46013 3256 aaKnown RBP6.78□□□□□ -1.32
COL6A3-212ENST00000491769 KRTAP13-3Q3SY46 172 aa6.77□□□□□ -1.33
COL6A3-212ENST00000491769 BRCA2P51587 3418 aa6.76□□□□□ -1.33
COL6A3-212ENST00000491769 DSPP15924 2871 aaKnown RBP6.75□□□□□ -1.33
COL6A3-212ENST00000491769 CHD9Q3L8U1 2897 aa6.75□□□□□ -1.33
COL6A3-212ENST00000491769 WDFY4Q6ZS81 3184 aa6.74□□□□□ -1.33
COL6A3-212ENST00000491769 PRUNE2Q8WUY3 3088 aa6.71□□□□□ -1.33
COL6A3-212ENST00000491769 REV3LO60673 3130 aa6.7□□□□□ -1.34
COL6A3-212ENST00000491769 H0YAA0 97 aa6.69□□□□□ -1.34
COL6A3-212ENST00000491769 XIRP2A4UGR9 3374 aa6.69□□□□□ -1.34
COL6A3-212ENST00000491769 TENM4Q6N022 2769 aa6.66□□□□□ -1.34
COL6A3-212ENST00000491769 RANBP2P49792 3224 aaKnown RBP6.66□□□□□ -1.34
COL6A3-212ENST00000491769 ITPR1Q14643 2758 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms