RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 C9orf153Q5TBE3 101 aa11.69□□□□□ -0.54
SHROOM3-209ENST00000490690 SPAG11AQ6PDA7 123 aa11.69□□□□□ -0.54
SHROOM3-209ENST00000490690 LINC01547P58512 204 aaPredicted RBP11.68□□□□□ -0.54
SHROOM3-209ENST00000490690 COL5A1-AS1Q5SY13 56 aa11.68□□□□□ -0.54
SHROOM3-209ENST00000490690 Q8N377 158 aa11.68□□□□□ -0.54
SHROOM3-209ENST00000490690 CLEC2BQ92478 149 aa11.68□□□□□ -0.54
SHROOM3-209ENST00000490690 PCP4L1A6NKN8 68 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 LST1O00453 97 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 MOBPQ13875 183 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 C4orf48Q5BLP8 95 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 C3orf22Q8N5N4 141 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 SNHG12Q9BXW3 62 aa11.67□□□□□ -0.54
SHROOM3-209ENST00000490690 TRBV20-1A0A075B6N2 111 aa11.66□□□□□ -0.54
SHROOM3-209ENST00000490690 C9orf118A6NHY6 69 aa11.66□□□□□ -0.54
SHROOM3-209ENST00000490690 ATXN8Q156A1 80 aa11.66□□□□□ -0.54
SHROOM3-209ENST00000490690 LINC00304Q8N9R0 145 aa11.66□□□□□ -0.54
SHROOM3-209ENST00000490690 ORMDL1Q9P0S3 153 aa11.66□□□□□ -0.54
SHROOM3-209ENST00000490690 H3BUT2 72 aa11.63□□□□□ -0.55
SHROOM3-209ENST00000490690 TMEM256-PLSCR3K7ERE1 68 aa11.63□□□□□ -0.55
SHROOM3-209ENST00000490690 TNXBP22105 4242 aa11.62□□□□□ -0.55
SHROOM3-209ENST00000490690 SMIM29Q86T20 159 aa11.62□□□□□ -0.55
SHROOM3-209ENST00000490690 TAX1BP3O14907 124 aa11.61□□□□□ -0.55
SHROOM3-209ENST00000490690 FABP2P12104 132 aa11.6□□□□□ -0.55
SHROOM3-209ENST00000490690 Q6JHZ5 121 aa11.6□□□□□ -0.55
SHROOM3-209ENST00000490690 SPINK1P00995 79 aa11.59□□□□□ -0.55
SHROOM3-209ENST00000490690 A0A1W2PPM0 123 aa11.58□□□□□ -0.56
SHROOM3-209ENST00000490690 NAA38Q9BRA0 125 aaKnown RBP11.58□□□□□ -0.56
SHROOM3-209ENST00000490690 TCL1BO95988 128 aa11.57□□□□□ -0.56
SHROOM3-209ENST00000490690 RPS29P62273 56 aaKnown RBP11.57□□□□□ -0.56
SHROOM3-209ENST00000490690 IGLV8-61A0A075B6I0 122 aa11.56□□□□□ -0.56
SHROOM3-209ENST00000490690 NDUFV3P56181 108 aaKnown RBP11.55□□□□□ -0.56
SHROOM3-209ENST00000490690 CD164Q04900 197 aa11.55□□□□□ -0.56
SHROOM3-209ENST00000490690 UBE2V1Q13404 147 aa11.54□□□□□ -0.56
SHROOM3-209ENST00000490690 LIMD2Q9BT23 127 aa11.5□□□□□ -0.57
SHROOM3-209ENST00000490690 H3BMG7 143 aa11.49□□□□□ -0.57
SHROOM3-209ENST00000490690 BAALC-AS2P0C853 105 aa11.49□□□□□ -0.57
SHROOM3-209ENST00000490690 SPCS1Q9Y6A9 102 aa11.47□□□□□ -0.57
SHROOM3-209ENST00000490690 ANKRD29Q8N6D5 301 aa11.46□□□□□ -0.57
SHROOM3-209ENST00000490690 C9JAW5 83 aa11.44□□□□□ -0.58
SHROOM3-209ENST00000490690 JMJD7-PLA2G4BH0Y9G9 81 aa11.43□□□□□ -0.58
SHROOM3-209ENST00000490690 H3BT86 120 aa11.43□□□□□ -0.58
SHROOM3-209ENST00000490690 IGFL1Q6UW32 110 aa11.43□□□□□ -0.58
SHROOM3-209ENST00000490690 RBM3P98179 157 aaKnown RBP11.41□□□□□ -0.58
SHROOM3-209ENST00000490690 C21orf62-AS1Q17RA5 79 aa11.41□□□□□ -0.58
SHROOM3-209ENST00000490690 Q5XG85 94 aa11.41□□□□□ -0.58
SHROOM3-209ENST00000490690 GTF2H5Q6ZYL4 71 aa11.41□□□□□ -0.58
SHROOM3-209ENST00000490690 Q6Q795 121 aa11.4□□□□□ -0.58
SHROOM3-209ENST00000490690 DSCR8Q96T75 97 aa11.4□□□□□ -0.58
SHROOM3-209ENST00000490690 HRCT1Q6UXD1 115 aa11.39□□□□□ -0.59
SHROOM3-209ENST00000490690 TEN1Q86WV5 123 aa11.39□□□□□ -0.59
SHROOM3-209ENST00000490690 K7EP34 96 aa11.37□□□□□ -0.59
SHROOM3-209ENST00000490690 TRBV7-7A0A0K0K1E9 115 aa11.36□□□□□ -0.59
SHROOM3-209ENST00000490690 PDE6GP18545 87 aa11.36□□□□□ -0.59
SHROOM3-209ENST00000490690 FP248Q71RG6 208 aaPredicted RBP11.36□□□□□ -0.59
SHROOM3-209ENST00000490690 SS18L2Q9UHA2 77 aa11.36□□□□□ -0.59
SHROOM3-209ENST00000490690 HERC1Q15751 4861 aa11.36□□□□□ -0.59
SHROOM3-209ENST00000490690 TRBV7-4A0A0J9YYF1 115 aa11.32□□□□□ -0.6
SHROOM3-209ENST00000490690 PRR4Q16378 134 aa11.32□□□□□ -0.6
SHROOM3-209ENST00000490690 A0A0G2JQZ4 141 aa11.3□□□□□ -0.6
SHROOM3-209ENST00000490690 A0A1B0GV72 72 aa11.29□□□□□ -0.6
SHROOM3-209ENST00000490690 CCKP06307 115 aa11.29□□□□□ -0.6
SHROOM3-209ENST00000490690 ASB16-AS1Q495Z4 193 aa11.29□□□□□ -0.6
SHROOM3-209ENST00000490690 A0A1B0GW54 56 aa11.28□□□□□ -0.6
SHROOM3-209ENST00000490690 LOC110117498A0A087WWA1 95 aa11.27□□□□□ -0.61
SHROOM3-209ENST00000490690 OBSCN-AS1Q96MR7 158 aa11.26□□□□□ -0.61
SHROOM3-209ENST00000490690 RETNLBQ9BQ08 111 aa11.26□□□□□ -0.61
SHROOM3-209ENST00000490690 IGLV7-46A0A075B6I9 117 aa11.24□□□□□ -0.61
SHROOM3-209ENST00000490690 A0A1W2PNM2 257 aa11.24□□□□□ -0.61
SHROOM3-209ENST00000490690 F8W1H4 67 aa11.24□□□□□ -0.61
SHROOM3-209ENST00000490690 A0A087WSZ3 146 aa11.23□□□□□ -0.61
SHROOM3-209ENST00000490690 MTURNQ8N3F0 131 aa11.23□□□□□ -0.61
SHROOM3-209ENST00000490690 VPS25Q9BRG1 176 aa11.22□□□□□ -0.61
SHROOM3-209ENST00000490690 Q6ZQT0 140 aa11.2□□□□□ -0.62
SHROOM3-209ENST00000490690 C14orf132Q9NPU4 83 aa11.2□□□□□ -0.62
SHROOM3-209ENST00000490690 PRO0461Q9UI25 63 aa11.19□□□□□ -0.62
SHROOM3-209ENST00000490690 TPRXLQ17RH7 258 aa11.18□□□□□ -0.62
SHROOM3-209ENST00000490690 C1orf195Q5TG92 126 aa11.18□□□□□ -0.62
SHROOM3-209ENST00000490690 SMCPP49901 116 aaPredicted RBP11.15□□□□□ -0.62
SHROOM3-209ENST00000490690 HMCN2Q8NDA2 5059 aa11.14□□□□□ -0.63
SHROOM3-209ENST00000490690 CDIP1Q9H305 208 aa11.09□□□□□ -0.63
SHROOM3-209ENST00000490690 J3KT08 172 aa11.06□□□□□ -0.64
SHROOM3-209ENST00000490690 KRTAP13-3Q3SY46 172 aa11.06□□□□□ -0.64
SHROOM3-209ENST00000490690 A0A1B0GV90 55 aa11.04□□□□□ -0.64
SHROOM3-209ENST00000490690 ETDBQ3ZM63 59 aa11.03□□□□□ -0.64
SHROOM3-209ENST00000490690 Q96NJ1 140 aa11.02□□□□□ -0.65
SHROOM3-209ENST00000490690 SIGMAR1Q99720 223 aa11.02□□□□□ -0.65
SHROOM3-209ENST00000490690 LINC00472Q9H8W2 130 aa11.02□□□□□ -0.65
SHROOM3-209ENST00000490690 NREPQ16612 68 aa11.01□□□□□ -0.65
SHROOM3-209ENST00000490690 IGKV4-1P06312 121 aa11□□□□□ -0.65
SHROOM3-209ENST00000490690 NDUFB1O75438 58 aa10.95□□□□□ -0.66
SHROOM3-209ENST00000490690 UBL5Q9BZL1 73 aa10.94□□□□□ -0.66
SHROOM3-209ENST00000490690 LRP2P98164 4655 aa10.91□□□□□ -0.66
SHROOM3-209ENST00000490690 C9orf92A6NGG3 77 aa10.91□□□□□ -0.66
SHROOM3-209ENST00000490690 ACYP1P07311 99 aa10.9□□□□□ -0.66
SHROOM3-209ENST00000490690 DEFB116Q30KQ4 102 aa10.9□□□□□ -0.66
SHROOM3-209ENST00000490690 C8orf87E5RJ46 101 aa10.89□□□□□ -0.67
SHROOM3-209ENST00000490690 XP32Q5T750 250 aa10.89□□□□□ -0.67
SHROOM3-209ENST00000490690 LPAP08519 4548 aa10.87□□□□□ -0.67
SHROOM3-209ENST00000490690 A8MWP4 228 aa10.87□□□□□ -0.67
SHROOM3-209ENST00000490690 A0A1B0GVX0 72 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms