RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SMIM2Q9BVW6 85 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 R4GMQ9 66 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 SACSQ9NZJ4 4579 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 FRYLO94915 3013 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 WDFY4Q6ZS81 3184 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 CMYA5Q8N3K9 4069 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 TRIOO75962 3097 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 HECTD4Q9Y4D8 3996 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 DMXL1Q9Y485 3027 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.46□□□□□ -2.342e-6■■□□□ 13.9
SMC4-220ENST00000488017 DNAH6Q9C0G6 4158 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 VCANP13611 3396 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 DNAH10Q8IVF4 4471 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 ZNF469Q96JG9 3925 aaPredicted RBP0.45□□□□□ -2.34
SMC4-220ENST00000488017 ETDCA0A1B0GVM5 59 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 G3V318 75 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 JMJD7-PLA2G4BH0Y9G9 81 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 NDUFA1O15239 70 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 NDUFB1O75438 58 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 SPINK9Q5DT21 86 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 C5orf56Q8N8D9 126 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 RPL39LQ96EH5 51 aaKnown RBP0.45□□□□□ -2.34
SMC4-220ENST00000488017 GAFA1Q96PS6 74 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 UBL5Q9BZL1 73 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 WFDC10AQ9H1F0 79 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 DNAH5Q8TE73 4624 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 VPS13CQ709C8 3753 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 FREM2Q5SZK8 3169 aa0.45□□□□□ -2.34
SMC4-220ENST00000488017 LAMA1P25391 3075 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 PRRC2CQ9Y520 2896 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 ANK3Q12955 4377 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 FRYQ5TBA9 3013 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 VWFP04275 2813 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 SVEP1Q4LDE5 3571 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 UBR5O95071 2799 aaPredicted RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 DNAH2Q9P225 4427 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 LAMA2P24043 3122 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 ZDBF2Q9HCK1 2354 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 TRGV1A0A0A0MS02 117 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 H0YAA0 97 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 H0YGX0 51 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 UQCR11O14957 56 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 MGPP08493 103 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 COX7BP24311 80 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 POLR2KP53803 58 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 RPL39P62891 51 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 HAMPP81172 84 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 PIGYQ3MUY2 71 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 LELP1Q5T871 98 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 Q6ZQY7 126 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 CRIPTQ9P021 101 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 CDKN2A-AS1Q9UH64 79 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 ATMQ13315 3056 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 HSPG2P98160 4391 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 DYNC2H1Q8NCM8 4307 aaKnown RBP0.44□□□□□ -2.34
SMC4-220ENST00000488017 DNAH3Q8TD57 4116 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 CHD6Q8TD26 2715 aa0.44□□□□□ -2.34
SMC4-220ENST00000488017 WDR87Q6ZQQ6 2873 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 ROS1P08922 2347 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 PTPRZ1P23471 2315 aaPredicted RBP0.43□□□□□ -2.34
SMC4-220ENST00000488017 CNTRLQ7Z7A1 2325 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 PLCE1Q9P212 2302 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 ZZEF1O43149 2961 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 PIEZO2Q9H5I5 2752 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 FBN2P35556 2912 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 HUWE1Q7Z6Z7 4374 aaKnown RBP0.43□□□□□ -2.34
SMC4-220ENST00000488017 COL12A1Q99715 3063 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 DNAH17Q9UFH2 4485 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 DEFB131BA0A096LNP1 70 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 A0A1B0GU69 56 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 K7EQZ3 153 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 LY6G6CO95867 125 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 LINC00158P58513 81 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 RPL37AP61513 92 aaKnown RBP0.43□□□□□ -2.34
SMC4-220ENST00000488017 COX6A2Q02221 97 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 LINC00575Q6W349 94 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 LEAP2Q969E1 77 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 CCL19Q99731 98 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 C10orf95Q9H7T3 257 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 KNL1Q8NG31 2342 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 PCNX1Q96RV3 2341 aa0.43□□□□□ -2.34
SMC4-220ENST00000488017 DSPP15924 2871 aaKnown RBP0.43□□□□□ -2.34
SMC4-220ENST00000488017 FAT2Q9NYQ8 4349 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 PDZD2O15018 2839 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 CDH23Q9H251 3354 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 CACNA1BQ00975 2339 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 FAT3Q8TDW7 4589 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 MUC5ACP98088 5654 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 LYNX1G3V0Z9 82 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 PLECQ15149 4684 aaKnown RBP0.42□□□□□ -2.34
SMC4-220ENST00000488017 C10orf55Q5SWW7 151 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 Q6ZRX8 168 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 Q8IZM0 81 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 DEFB106AQ8N104 65 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 DCHS2Q6V1P9 2916 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 FLGP20930 4061 aaPredicted RBP0.42□□□□□ -2.34
SMC4-220ENST00000488017 KALRNO60229 2985 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 CRYBG3Q68DQ2 2970 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 PKD1P98161 4303 aa0.42□□□□□ -2.34
SMC4-220ENST00000488017 APOBP04114 4563 aaKnown RBP0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms