RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 C5orf42Q9H799 3197 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 TECTAO75443 2155 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 K7EQZ3 153 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 SPRR1AP35321 89 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 DEFB109BQ30KR1 87 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 SPATA8Q6RVD6 105 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 NOP10Q9NPE3 64 aaKnown RBP1.37□□□□□ -2.19
USP48-209ENST00000487880 PRO0255Q9UI72 69 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 TRIOO75962 3097 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 LAMA1P25391 3075 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 CEP250Q9BV73 2442 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 MKI67P46013 3256 aaKnown RBP1.37□□□□□ -2.19
USP48-209ENST00000487880 BRCA2P51587 3418 aa1.37□□□□□ -2.19
USP48-209ENST00000487880 CFAP54Q96N23 3096 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 MED13LQ71F56 2210 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 KALRNO60229 2985 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 PKDREJQ9NTG1 2253 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 FRYLO94915 3013 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 IGKV3OR2-268A0A0C4DH90 116 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 ROS1P08922 2347 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 DEFB112Q30KQ8 113 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 UNQ6190/PRO20217Q6UXQ8 127 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 Q6ZRX8 168 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 C4orf3Q8WVX3 66 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 C6orf48Q9UBA6 75 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 SPTBN2O15020 2390 aa1.36□□□□□ -2.19
USP48-209ENST00000487880 UQCR11O14957 56 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 IGLV1-51P01701 117 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 SPINK7P58062 85 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 LELP1Q5T871 98 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 SPAG11AQ6PDA7 123 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 USP34Q70CQ2 3546 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 MGAQ8IWI9 3026 aa1.35□□□□□ -2.19
USP48-209ENST00000487880 MAP1BP46821 2468 aaKnown RBP1.34□□□□□ -2.19
USP48-209ENST00000487880 PCNX1Q96RV3 2341 aa1.34□□□□□ -2.19
USP48-209ENST00000487880 CNOT1A5YKK6 2376 aaKnown RBP1.34□□□□□ -2.19
USP48-209ENST00000487880 WNK1Q9H4A3 2382 aa1.34□□□□□ -2.19
USP48-209ENST00000487880 B4DSR2 109 aa1.34□□□□□ -2.19
USP48-209ENST00000487880 MSMBP08118 114 aa1.34□□□□□ -2.19
USP48-209ENST00000487880 ACYP2P14621 99 aa1.34□□□□□ -2.19
USP48-209ENST00000487880 RPL37AP61513 92 aaKnown RBP1.34□□□□□ -2.19
USP48-209ENST00000487880 PRUNE2Q8WUY3 3088 aa1.34□□□□□ -2.2
USP48-209ENST00000487880 CFAP47Q6ZTR5 3102 aa1.34□□□□□ -2.2
USP48-209ENST00000487880 WDFY4Q6ZS81 3184 aa1.34□□□□□ -2.2
USP48-209ENST00000487880 DSPP15924 2871 aaKnown RBP1.33□□□□□ -2.2
USP48-209ENST00000487880 ANKHD1Q8IWZ3 2542 aaKnown RBP1.33□□□□□ -2.2
USP48-209ENST00000487880 CACNA1HO95180 2353 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 LAMA3Q16787 3333 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 REV3LO60673 3130 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 A0A087WSZ3 146 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 H3BNG1 76 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 SPRR1BP22528 89 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 ROMO1P60602 79 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 MIR22HGQ0VDD5 57 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 CLPSL2Q6UWE3 100 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 WFDC13Q8IUB5 93 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 LINC00472Q9H8W2 130 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 APC2O95996 2303 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 FREM2Q5SZK8 3169 aa1.33□□□□□ -2.2
USP48-209ENST00000487880 EP300Q09472 2414 aaPredicted RBP1.32□□□□□ -2.2
USP48-209ENST00000487880 MMP24-AS1A0A0U1RRL7 71 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 A0A1B0GU69 56 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 C1orf134Q5TEV5 83 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 KRTAP26-1Q6PEX3 210 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 WFDC10BQ8IUB3 73 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 CREBBPQ92793 2442 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 PIEZO2Q9H5I5 2752 aa1.32□□□□□ -2.2
USP48-209ENST00000487880 VCANP13611 3396 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 CSAG1Q6PB30 78 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 C10orf99Q6UWK7 81 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 DEFB105AQ8NG35 78 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 DMAC1Q96GE9 116 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 DMXL2Q8TDJ6 3036 aa1.31□□□□□ -2.2
USP48-209ENST00000487880 SPTBN5Q9NRC6 3674 aaKnown RBP1.3□□□□□ -2.2
USP48-209ENST00000487880 PRRC2CQ9Y520 2896 aaKnown RBP1.3□□□□□ -2.2
USP48-209ENST00000487880 DEFB130BP0DP73 79 aa1.3□□□□□ -2.2
USP48-209ENST00000487880 DEFB130AP0DP74 79 aa1.3□□□□□ -2.2
USP48-209ENST00000487880 MRPL34Q9BQ48 92 aaKnown RBP1.3□□□□□ -2.2
USP48-209ENST00000487880 PRO3102Q9H379 93 aa1.3□□□□□ -2.2
USP48-209ENST00000487880 AKAP6Q13023 2319 aa1.3□□□□□ -2.2
USP48-209ENST00000487880 TACC2O95359 2948 aa1.3□□□□□ -2.2
USP48-209ENST00000487880 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.29□□□□□ -2.2
USP48-209ENST00000487880 C2CD3Q4AC94 2353 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 DCHS1Q96JQ0 3298 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 CDH23Q9H251 3354 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 WDFY3Q8IZQ1 3526 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 A0A096LPF7 62 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 SPART-AS1P0CW21 52 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 DEFB136Q30KP8 78 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 LINC01556Q5JQF7 62 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 DEFB124Q8NES8 71 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 ADGRG4Q8IZF6 3080 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 NCOR1O75376 2440 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 AKAP13Q12802 2813 aa1.29□□□□□ -2.2
USP48-209ENST00000487880 PTPRZ1P23471 2315 aaPredicted RBP1.28□□□□□ -2.2
USP48-209ENST00000487880 CEP290O15078 2479 aa1.28□□□□□ -2.2
USP48-209ENST00000487880 SPEGQ15772 3267 aa1.28□□□□□ -2.2
USP48-209ENST00000487880 LY6G6CO95867 125 aa1.28□□□□□ -2.2
USP48-209ENST00000487880 CCL19Q99731 98 aa1.28□□□□□ -2.2
USP48-209ENST00000487880 ZDBF2Q9HCK1 2354 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms