RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 DNAJC13O75165 2243 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 ASXL3Q9C0F0 2248 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 TRAV22A0A0B4J277 110 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 A0A1B0GU69 56 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 LINC00959A0A1B0GUT2 108 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 SPAARA0A1B0GVQ0 90 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 LYNX1G3V0Z9 82 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 H0Y9P7 68 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 K7EQZ3 153 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 MT-ATP8P03928 68 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 KRTAP2-3P0C7H8 128 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 HTN1P15515 57 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 CRIP1P50238 77 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 RPS29P62273 56 aaKnown RBP0.55□□□□□ -2.32
SMC4-218ENST00000486711 C9orf116Q5BN46 136 aaPredicted RBP0.55□□□□□ -2.32
SMC4-218ENST00000486711 LINC01556Q5JQF7 62 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 SSBP3-AS1Q7Z2R9 100 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 WFDC13Q8IUB5 93 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 SMIM11BQ8TCY0 68 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 SPRR4Q96PI1 79 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 KRTAP2-4Q9BYR9 128 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 KRTAP2-1Q9BYU5 128 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 KCNQ1DNQ9H478 68 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 UNC80Q8N2C7 3258 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 VCANP13611 3396 aa0.55□□□□□ -2.32
SMC4-218ENST00000486711 BRCA2P51587 3418 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 LAMA2P24043 3122 aaKnown RBP0.54□□□□□ -2.32
SMC4-218ENST00000486711 RANBP2P49792 3224 aaKnown RBP0.54□□□□□ -2.32
SMC4-218ENST00000486711 SPENQ96T58 3664 aaKnown RBP0.54□□□□□ -2.32
SMC4-218ENST00000486711 SPTBN5Q9NRC6 3674 aaKnown RBP0.54□□□□□ -2.32
SMC4-218ENST00000486711 MKI67P46013 3256 aaKnown RBP0.54□□□□□ -2.32
SMC4-218ENST00000486711 H7BZZ5 65 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 SPINK1P00995 79 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 DEFB112Q30KQ8 113 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 Q6ZRX8 168 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 UBE2DNLQ8IWF7 75 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 DEFB124Q8NES8 71 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 LEAP2Q969E1 77 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 C6orf48Q9UBA6 75 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 U3KQA8 63 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 F5P12259 2224 aa0.54□□□□□ -2.32
SMC4-218ENST00000486711 CEP350Q5VT06 3117 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 TRIOO75962 3097 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 C5orf42Q9H799 3197 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 APELAP0DMC3 54 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 DEFB130BP0DP73 79 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 DEFB130AP0DP74 79 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 RPL39P62891 51 aaKnown RBP0.53□□□□□ -2.32
SMC4-218ENST00000486711 RPL39LQ96EH5 51 aaKnown RBP0.53□□□□□ -2.32
SMC4-218ENST00000486711 MRPL34Q9BQ48 92 aaKnown RBP0.53□□□□□ -2.32
SMC4-218ENST00000486711 CRIPTQ9P021 101 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 LINC01558Q9Y6Z2 57 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 BSNQ9UPA5 3926 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 DCHS1Q96JQ0 3298 aa0.53□□□□□ -2.32
SMC4-218ENST00000486711 PTPRZ1P23471 2315 aaPredicted RBP0.53□□□□□ -2.33
SMC4-218ENST00000486711 VPS13AQ96RL7 3174 aa0.53□□□□□ -2.33
SMC4-218ENST00000486711 MYO15AQ9UKN7 3530 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 DMDP11532 3685 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 VPS13CQ709C8 3753 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 TNCP24821 2201 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 AHCTF1Q8WYP5 2266 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 LCE6AA0A183 80 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 G3V318 75 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 SPRR1BP22528 89 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 SPRR1AP35321 89 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 Q5VV11 94 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 WDR87Q6ZQQ6 2873 aa0.52□□□□□ -2.33
SMC4-218ENST00000486711 KIAA0100Q14667 2235 aaKnown RBP0.52□□□□□ -2.33
SMC4-218ENST00000486711 URB1O60287 2271 aaKnown RBP0.52□□□□□ -2.33
SMC4-218ENST00000486711 SZT2Q5T011 3432 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 AKAP9Q99996 3911 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 A0A096LPF7 62 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 TRANK1O15050 2925 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 LAMA1P25391 3075 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 HTTP42858 3142 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 WFDC10BQ8IUB3 73 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 DEFB105AQ8NG35 78 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 CDH23Q9H251 3354 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 PRO3102Q9H379 93 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 WNK2Q9Y3S1 2297 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 CELSR3Q9NYQ7 3312 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 FREM2Q5SZK8 3169 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 WDFY4Q6ZS81 3184 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 FRYLO94915 3013 aa0.51□□□□□ -2.33
SMC4-218ENST00000486711 MAP1BP46821 2468 aaKnown RBP0.5□□□□□ -2.33
SMC4-218ENST00000486711 CADP27708 2225 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 ZFHX3Q15911 3703 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 LAMA3Q16787 3333 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 COL6A3P12111 3177 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 ZZEF1O43149 2961 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 NBPF19A0A087WUL8 3843 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 A0A087WVE0 104 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 C9orf92A6NGG3 77 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 M0QZ58 72 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 HTN3P15516 51 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 COX6A2Q02221 97 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 DEFB135Q30KP9 77 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 NCOR1O75376 2440 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 PDE4DIPQ5VU43 2346 aa0.5□□□□□ -2.33
SMC4-218ENST00000486711 ASPMQ8IZT6 3477 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms