RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 DEFB105AQ8NG35 78 aa2.51□□□□□ -2.01
PTPN4-210ENST00000485247 TRAV23DV6A0A075B6W5 121 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 TRBV10-2A0A0K0K1G8 114 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 A8MWP4 228 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 ZNF73O43830 326 aaPredicted RBP2.5□□□□□ -2.01
PTPN4-210ENST00000485247 HRES1P13985 223 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 NDUFA6P56556 154 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 TAL2Q16559 108 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 IGFL1Q6UW32 110 aa2.5□□□□□ -2.01
PTPN4-210ENST00000485247 SRP19P09132 144 aaKnown RBP2.49□□□□□ -2.01
PTPN4-210ENST00000485247 HINT1P49773 126 aaPredicted RBP2.49□□□□□ -2.01
PTPN4-210ENST00000485247 TMEM170BQ5T4T1 132 aa2.49□□□□□ -2.01
PTPN4-210ENST00000485247 ATP5L2Q7Z4Y8 100 aa2.49□□□□□ -2.01
PTPN4-210ENST00000485247 A8MUU9 505 aa2.48□□□□□ -2.01
PTPN4-210ENST00000485247 FA2HQ7L5A8 372 aa2.48□□□□□ -2.01
PTPN4-210ENST00000485247 SPRR2FQ96RM1 72 aa2.48□□□□□ -2.01
PTPN4-210ENST00000485247 TEX49A0A1B0GTD5 131 aa2.47□□□□□ -2.01
PTPN4-210ENST00000485247 C11orf86A6NJI1 115 aa2.47□□□□□ -2.01
PTPN4-210ENST00000485247 SPANXB1Q9NS25 103 aaPredicted RBP2.47□□□□□ -2.01
PTPN4-210ENST00000485247 NAT8Q9UHE5 227 aa2.47□□□□□ -2.01
PTPN4-210ENST00000485247 LINC01549A6NIU2 74 aa2.46□□□□□ -2.02
PTPN4-210ENST00000485247 SLC51BQ86UW2 128 aa2.46□□□□□ -2.02
PTPN4-210ENST00000485247 MAP1LC3CQ9BXW4 147 aa2.46□□□□□ -2.02
PTPN4-210ENST00000485247 LINC00587B1AMM8 73 aa2.45□□□□□ -2.02
PTPN4-210ENST00000485247 MTURNQ8N3F0 131 aa2.45□□□□□ -2.02
PTPN4-210ENST00000485247 MIEN1Q9BRT3 115 aa2.45□□□□□ -2.02
PTPN4-210ENST00000485247 LINC01546A6NGU7 62 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 C9JQL5 133 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 E9PLD3 99 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 MT1BP07438 61 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 SPRR2DP22532 72 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 KRTAP5-5Q701N2 237 aaPredicted RBP2.44□□□□□ -2.02
PTPN4-210ENST00000485247 BAGE3Q86Y29 109 aa2.44□□□□□ -2.02
PTPN4-210ENST00000485247 TMEM223A0PJW6 202 aa2.43□□□□□ -2.02
PTPN4-210ENST00000485247 NDUFC2O95298 119 aa2.43□□□□□ -2.02
PTPN4-210ENST00000485247 COMMD7Q86VX2 200 aa2.43□□□□□ -2.02
PTPN4-210ENST00000485247 TRBV7-7A0A0K0K1E9 115 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 MYMXA0A1B0GTQ4 84 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 HBDP02042 147 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 COX7BP24311 80 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 NPC2P61916 151 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 OR13C6PQ8NH95 151 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 SMCO4Q9NRQ5 59 aa2.42□□□□□ -2.02
PTPN4-210ENST00000485247 A0A096LNJ9 63 aa2.41□□□□□ -2.02
PTPN4-210ENST00000485247 LST1O00453 97 aa2.41□□□□□ -2.02
PTPN4-210ENST00000485247 ELOF1P60002 83 aaKnown RBP2.41□□□□□ -2.02
PTPN4-210ENST00000485247 Q5VV11 94 aa2.41□□□□□ -2.02
PTPN4-210ENST00000485247 SOSTDC1Q6X4U4 206 aa2.41□□□□□ -2.02
PTPN4-210ENST00000485247 CBY1Q9Y3M2 126 aa2.41□□□□□ -2.02
PTPN4-210ENST00000485247 IGLV5-48A0A075B6I7 105 aa2.4□□□□□ -2.03
PTPN4-210ENST00000485247 RHEBQ15382 184 aa2.4□□□□□ -2.03
PTPN4-210ENST00000485247 CEND1Q8N111 149 aa2.4□□□□□ -2.03
PTPN4-210ENST00000485247 F8WEM9 126 aa2.39□□□□□ -2.03
PTPN4-210ENST00000485247 PMCHL1Q16048 86 aa2.39□□□□□ -2.03
PTPN4-210ENST00000485247 RGS21Q2M5E4 152 aa2.39□□□□□ -2.03
PTPN4-210ENST00000485247 KRTAP5-2Q701N4 177 aa2.39□□□□□ -2.03
PTPN4-210ENST00000485247 SERF1AO75920 110 aa2.38□□□□□ -2.03
PTPN4-210ENST00000485247 TSPEAR-AS2P59090 65 aa2.38□□□□□ -2.03
PTPN4-210ENST00000485247 PEA15Q15121 130 aa2.38□□□□□ -2.03
PTPN4-210ENST00000485247 CLEC2BQ92478 149 aa2.38□□□□□ -2.03
PTPN4-210ENST00000485247 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
PTPN4-210ENST00000485247 A0A1B0GWB2 263 aa2.37□□□□□ -2.03
PTPN4-210ENST00000485247 A0A1W2PNM2 257 aa2.37□□□□□ -2.03
PTPN4-210ENST00000485247 UQCC3Q6UW78 93 aa2.37□□□□□ -2.03
PTPN4-210ENST00000485247 MT-ND4LP03901 98 aa2.36□□□□□ -2.03
PTPN4-210ENST00000485247 IFITM2Q01629 132 aa2.36□□□□□ -2.03
PTPN4-210ENST00000485247 Q6JHZ5 121 aa2.36□□□□□ -2.03
PTPN4-210ENST00000485247 IMUPQ9GZP8 106 aa2.36□□□□□ -2.03
PTPN4-210ENST00000485247 LINC00614P0C842 121 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 SPINK7P58062 85 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 SEC61GP60059 68 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 KRTAP19-8Q3LI54 63 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 KRTAP8-1Q8IUC2 63 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 SPANXDQ9BXN6 97 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 SPANXCQ9NY87 97 aa2.35□□□□□ -2.03
PTPN4-210ENST00000485247 TRAV12-1A0A0B4J245 112 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 COLCA2A8K830 154 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 J3QQQ9 107 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 LEPROTO15243 131 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 LINC00313P59037 77 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 WFDC13Q8IUB5 93 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 TCTE3Q8IZS6 198 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 SLC7A5P1Q8MH63 180 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 PRO0461Q9UI25 63 aa2.34□□□□□ -2.03
PTPN4-210ENST00000485247 TRBV7-6A0A0J9YX20 115 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 A0A0J9YXY3 114 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 FAM236AA0A1B0GUQ0 79 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 FAM236BA0A1B0GV22 79 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 ZNF815PA8K554 130 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 NMUP48645 174 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 FABP9Q0Z7S8 132 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 OCIAD2Q56VL3 154 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 IFI27L1Q96BM0 104 aa2.33□□□□□ -2.04
PTPN4-210ENST00000485247 TRAV13-2A0A0B4J235 113 aa2.32□□□□□ -2.04
PTPN4-210ENST00000485247 LINC00308Q8TCZ7 52 aa2.32□□□□□ -2.04
PTPN4-210ENST00000485247 SIGMAR1Q99720 223 aa2.32□□□□□ -2.04
PTPN4-210ENST00000485247 SS18L2Q9UHA2 77 aa2.32□□□□□ -2.04
PTPN4-210ENST00000485247 H0Y8G0 127 aa2.31□□□□□ -2.04
PTPN4-210ENST00000485247 C18orf32Q8TCD1 76 aa2.31□□□□□ -2.04
PTPN4-210ENST00000485247 SEC11CQ9BY50 192 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms