RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 DNAH5Q8TE73 4624 aa8.59□□□□□ -1.03
CLK3-204ENST00000483723 SCXQ7RTU7 201 aa8.58□□□□□ -1.04
CLK3-204ENST00000483723 IGLV8-61A0A075B6I0 122 aa8.57□□□□□ -1.04
CLK3-204ENST00000483723 C1orf137Q5JT78 98 aa8.57□□□□□ -1.04
CLK3-204ENST00000483723 A0A1B0GVY2 172 aa8.57□□□□□ -1.04
CLK3-204ENST00000483723 ZNF861PO60384 105 aa8.56□□□□□ -1.04
CLK3-204ENST00000483723 IGLV7-43P04211 117 aa8.54□□□□□ -1.04
CLK3-204ENST00000483723 SPRR4Q96PI1 79 aa8.54□□□□□ -1.04
CLK3-204ENST00000483723 TRBV7-7A0A0K0K1E9 115 aa8.53□□□□□ -1.04
CLK3-204ENST00000483723 A0A1B0GW54 56 aa8.53□□□□□ -1.04
CLK3-204ENST00000483723 A0A1W2PNM2 257 aa8.53□□□□□ -1.04
CLK3-204ENST00000483723 SCGB1A1P11684 91 aa8.53□□□□□ -1.04
CLK3-204ENST00000483723 Q6Q795 121 aa8.53□□□□□ -1.04
CLK3-204ENST00000483723 EPPK1P58107 5090 aaKnown RBP8.53□□□□□ -1.04
CLK3-204ENST00000483723 F8WEM9 126 aa8.52□□□□□ -1.05
CLK3-204ENST00000483723 LINC00483Q53H64 154 aa8.52□□□□□ -1.05
CLK3-204ENST00000483723 Q6JHZ5 121 aa8.52□□□□□ -1.05
CLK3-204ENST00000483723 IMUPQ9GZP8 106 aa8.51□□□□□ -1.05
CLK3-204ENST00000483723 UBL5Q9BZL1 73 aa8.51□□□□□ -1.05
CLK3-204ENST00000483723 Q8NBF4 154 aa8.5□□□□□ -1.05
CLK3-204ENST00000483723 ZNF706Q9Y5V0 76 aaPredicted RBP8.5□□□□□ -1.05
CLK3-204ENST00000483723 BIRC6Q9NR09 4857 aa8.5□□□□□ -1.05
CLK3-204ENST00000483723 IGFL1Q6UW32 110 aa8.49□□□□□ -1.05
CLK3-204ENST00000483723 Q6ZVQ6 151 aa8.49□□□□□ -1.05
CLK3-204ENST00000483723 HAMPP81172 84 aa8.47□□□□□ -1.05
CLK3-204ENST00000483723 CRYGAP11844 174 aa8.46□□□□□ -1.05
CLK3-204ENST00000483723 ATP5EP2Q5VTU8 51 aa8.46□□□□□ -1.05
CLK3-204ENST00000483723 IGKV3D-7A0A0C4DH55 119 aa8.45□□□□□ -1.06
CLK3-204ENST00000483723 A0A0G2JQZ4 141 aa8.43□□□□□ -1.06
CLK3-204ENST00000483723 RPL37AP61513 92 aaKnown RBP8.43□□□□□ -1.06
CLK3-204ENST00000483723 SRRM2Q9UQ35 2752 aaKnown RBP8.41□□□□□ -1.06
CLK3-204ENST00000483723 CXCL6P80162 114 aa8.41□□□□□ -1.06
CLK3-204ENST00000483723 NREPQ16612 68 aa8.41□□□□□ -1.06
CLK3-204ENST00000483723 PCP4P48539 62 aa8.4□□□□□ -1.07
CLK3-204ENST00000483723 LRP1BQ9NZR2 4599 aa8.39□□□□□ -1.07
CLK3-204ENST00000483723 ANAPC11Q9NYG5 84 aa8.38□□□□□ -1.07
CLK3-204ENST00000483723 IGLV9-49A0A0B4J1Y8 123 aa8.37□□□□□ -1.07
CLK3-204ENST00000483723 DYNC1H1Q14204 4646 aaKnown RBP8.36□□□□□ -1.07
CLK3-204ENST00000483723 C9orf153Q5TBE3 101 aa8.35□□□□□ -1.07
CLK3-204ENST00000483723 HIST1H4AP62805 103 aaKnown RBP8.34□□□□□ -1.07
CLK3-204ENST00000483723 A0A087WSZ3 146 aa8.34□□□□□ -1.07
CLK3-204ENST00000483723 MOBPQ13875 183 aa8.34□□□□□ -1.07
CLK3-204ENST00000483723 BPY2O14599 106 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 FAM229BQ4G0N7 80 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 A0A087WVE0 104 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 FAM236AA0A1B0GUQ0 79 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 FAM236BA0A1B0GV22 79 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 SSBP3-AS1Q7Z2R9 100 aa8.32□□□□□ -1.08
CLK3-204ENST00000483723 KRTAP1-4P0C5Y4 121 aa8.31□□□□□ -1.08
CLK3-204ENST00000483723 PKHD1P08F94 4074 aa8.3□□□□□ -1.08
CLK3-204ENST00000483723 SPINK6Q6UWN8 80 aa8.29□□□□□ -1.08
CLK3-204ENST00000483723 KRTAP10-4P60372 401 aaPredicted RBP8.29□□□□□ -1.08
CLK3-204ENST00000483723 SMR3BP02814 79 aaPredicted RBP8.28□□□□□ -1.08
CLK3-204ENST00000483723 DSCR10P59022 87 aa8.28□□□□□ -1.08
CLK3-204ENST00000483723 LINC00472Q9H8W2 130 aa8.28□□□□□ -1.08
CLK3-204ENST00000483723 IGKV4-1P06312 121 aa8.27□□□□□ -1.09
CLK3-204ENST00000483723 CD164Q04900 197 aa8.27□□□□□ -1.09
CLK3-204ENST00000483723 KRTAP13-2Q52LG2 175 aa8.27□□□□□ -1.09
CLK3-204ENST00000483723 A0A087X002 238 aa8.26□□□□□ -1.09
CLK3-204ENST00000483723 ANAPC13Q9BS18 74 aa8.25□□□□□ -1.09
CLK3-204ENST00000483723 APOBP04114 4563 aaKnown RBP8.25□□□□□ -1.09
CLK3-204ENST00000483723 Q8N9L7 120 aa8.23□□□□□ -1.09
CLK3-204ENST00000483723 VPS13BQ7Z7G8 4022 aa8.23□□□□□ -1.09
CLK3-204ENST00000483723 ATOX1O00244 68 aa8.23□□□□□ -1.09
CLK3-204ENST00000483723 HRCT1Q6UXD1 115 aa8.23□□□□□ -1.09
CLK3-204ENST00000483723 SS18L2Q9UHA2 77 aa8.23□□□□□ -1.09
CLK3-204ENST00000483723 Q96NJ1 140 aa8.22□□□□□ -1.09
CLK3-204ENST00000483723 PLA2G1BP04054 148 aaKnown RBP8.21□□□□□ -1.09
CLK3-204ENST00000483723 DEFB116Q30KQ4 102 aa8.21□□□□□ -1.09
CLK3-204ENST00000483723 HERC2O95714 4834 aa8.21□□□□□ -1.1
CLK3-204ENST00000483723 J3KT08 172 aa8.19□□□□□ -1.1
CLK3-204ENST00000483723 K7EQZ3 153 aa8.19□□□□□ -1.1
CLK3-204ENST00000483723 CDK2AP2O75956 126 aa8.19□□□□□ -1.1
CLK3-204ENST00000483723 ASB16-AS1Q495Z4 193 aa8.17□□□□□ -1.1
CLK3-204ENST00000483723 A8MWP4 228 aa8.17□□□□□ -1.1
CLK3-204ENST00000483723 Q5XG85 94 aa8.16□□□□□ -1.1
CLK3-204ENST00000483723 PRR15Q8IV56 129 aa8.15□□□□□ -1.1
CLK3-204ENST00000483723 KIAA1109Q2LD37 5005 aa8.15□□□□□ -1.11
CLK3-204ENST00000483723 SERP2Q8N6R1 65 aa8.14□□□□□ -1.11
CLK3-204ENST00000483723 TYMSOSQ8TAI1 123 aa8.14□□□□□ -1.11
CLK3-204ENST00000483723 FAM229AH3BQW9 127 aa8.12□□□□□ -1.11
CLK3-204ENST00000483723 COX7CP15954 63 aa8.12□□□□□ -1.11
CLK3-204ENST00000483723 SMIM20Q8N5G0 67 aa8.12□□□□□ -1.11
CLK3-204ENST00000483723 PRR26Q8N8Z3 221 aa8.12□□□□□ -1.11
CLK3-204ENST00000483723 FAT1Q14517 4588 aa8.11□□□□□ -1.11
CLK3-204ENST00000483723 TRAV7A0A075B6U4 112 aa8.1□□□□□ -1.11
CLK3-204ENST00000483723 HCG22E2RYF7 251 aa8.1□□□□□ -1.11
CLK3-204ENST00000483723 CCDC179H3BU77 68 aa8.1□□□□□ -1.11
CLK3-204ENST00000483723 UQCRQO14949 82 aa8.1□□□□□ -1.11
CLK3-204ENST00000483723 NDUFB1O75438 58 aa8.09□□□□□ -1.11
CLK3-204ENST00000483723 KRTAP29-1A8MX34 341 aaPredicted RBP8.09□□□□□ -1.11
CLK3-204ENST00000483723 SPINK1P00995 79 aa8.07□□□□□ -1.12
CLK3-204ENST00000483723 OCR1Q9BZK8 76 aa8.07□□□□□ -1.12
CLK3-204ENST00000483723 C4orf48Q5BLP8 95 aa8.06□□□□□ -1.12
CLK3-204ENST00000483723 A0A1B0GVX0 72 aa8.06□□□□□ -1.12
CLK3-204ENST00000483723 RPS29P62273 56 aaKnown RBP8.06□□□□□ -1.12
CLK3-204ENST00000483723 Q5VSD8 79 aa8.06□□□□□ -1.12
CLK3-204ENST00000483723 SPAG11AQ6PDA7 123 aa8.06□□□□□ -1.12
CLK3-204ENST00000483723 LIMD2Q9BT23 127 aa8.06□□□□□ -1.12
CLK3-204ENST00000483723 PKHD1L1Q86WI1 4243 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 237.6 ms