RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 PPDPFLQ8WWR9 84 aa12.77□□□□□ -0.37
C9orf3-215ENST00000478473 C12orf57Q99622 126 aa12.76□□□□□ -0.37
C9orf3-215ENST00000478473 F8WEM9 126 aa12.75□□□□□ -0.37
C9orf3-215ENST00000478473 Q6JHZ5 121 aa12.75□□□□□ -0.37
C9orf3-215ENST00000478473 C14orf144Q96I85 54 aa12.75□□□□□ -0.37
C9orf3-215ENST00000478473 CFC1BP0CG36 223 aa12.74□□□□□ -0.37
C9orf3-215ENST00000478473 CFC1P0CG37 223 aa12.74□□□□□ -0.37
C9orf3-215ENST00000478473 SPATA45Q537H7 98 aa12.73□□□□□ -0.37
C9orf3-215ENST00000478473 PAM16Q9Y3D7 125 aa12.73□□□□□ -0.37
C9orf3-215ENST00000478473 A0A0B4J2C4 111 aa12.72□□□□□ -0.37
C9orf3-215ENST00000478473 C2orf91Q6ZV80 131 aa12.72□□□□□ -0.37
C9orf3-215ENST00000478473 TCL1BO95988 128 aa12.71□□□□□ -0.37
C9orf3-215ENST00000478473 OCIAD2Q56VL3 154 aa12.71□□□□□ -0.37
C9orf3-215ENST00000478473 C9orf92A6NGG3 77 aa12.7□□□□□ -0.38
C9orf3-215ENST00000478473 VAMP8Q9BV40 100 aa12.7□□□□□ -0.38
C9orf3-215ENST00000478473 CLEC2BQ92478 149 aa12.69□□□□□ -0.38
C9orf3-215ENST00000478473 IGFL1Q6UW32 110 aa12.68□□□□□ -0.38
C9orf3-215ENST00000478473 H0YGX0 51 aa12.66□□□□□ -0.38
C9orf3-215ENST00000478473 TRBV7-7A0A0K0K1E9 115 aa12.65□□□□□ -0.38
C9orf3-215ENST00000478473 RAB37Q96AX2 223 aa12.65□□□□□ -0.38
C9orf3-215ENST00000478473 PCOTHQ58A44 107 aa12.64□□□□□ -0.39
C9orf3-215ENST00000478473 CEND1Q8N111 149 aa12.63□□□□□ -0.39
C9orf3-215ENST00000478473 SNHG12Q9BXW3 62 aa12.61□□□□□ -0.39
C9orf3-215ENST00000478473 SNCGO76070 127 aa12.59□□□□□ -0.39
C9orf3-215ENST00000478473 FAM218AQ96MZ4 157 aa12.59□□□□□ -0.39
C9orf3-215ENST00000478473 KRTAP9-2Q9BYQ4 174 aa12.59□□□□□ -0.39
C9orf3-215ENST00000478473 A0A1B0GX51 115 aa12.58□□□□□ -0.4
C9orf3-215ENST00000478473 KRTAP19-2Q3LHN2 52 aa12.58□□□□□ -0.4
C9orf3-215ENST00000478473 LCE2CQ5TA81 110 aa12.58□□□□□ -0.4
C9orf3-215ENST00000478473 PRO1854Q9UHT4 67 aa12.58□□□□□ -0.4
C9orf3-215ENST00000478473 TMEM238LA0A1B0GVL6 79 aa12.57□□□□□ -0.4
C9orf3-215ENST00000478473 A6NJY4 79 aa12.57□□□□□ -0.4
C9orf3-215ENST00000478473 RPL37P61927 97 aaKnown RBP12.57□□□□□ -0.4
C9orf3-215ENST00000478473 PYY3Q5JQD4 70 aa12.56□□□□□ -0.4
C9orf3-215ENST00000478473 Q6Q795 121 aa12.56□□□□□ -0.4
C9orf3-215ENST00000478473 FXYD2P54710 66 aa12.54□□□□□ -0.4
C9orf3-215ENST00000478473 H3BUT2 72 aa12.53□□□□□ -0.4
C9orf3-215ENST00000478473 NDUFV3P56181 108 aaKnown RBP12.51□□□□□ -0.41
C9orf3-215ENST00000478473 GHRHP01286 108 aa12.5□□□□□ -0.41
C9orf3-215ENST00000478473 TEN1Q86WV5 123 aa12.47□□□□□ -0.41
C9orf3-215ENST00000478473 TRIAP1O43715 76 aa12.46□□□□□ -0.41
C9orf3-215ENST00000478473 HSD52Q0P140 79 aa12.46□□□□□ -0.41
C9orf3-215ENST00000478473 LST1O00453 97 aa12.45□□□□□ -0.42
C9orf3-215ENST00000478473 SS18L2Q9UHA2 77 aa12.45□□□□□ -0.42
C9orf3-215ENST00000478473 H3BMG7 143 aa12.41□□□□□ -0.42
C9orf3-215ENST00000478473 H3BQ85 93 aa12.38□□□□□ -0.43
C9orf3-215ENST00000478473 MT1HP80294 61 aa12.38□□□□□ -0.43
C9orf3-215ENST00000478473 Q75L30 129 aa12.38□□□□□ -0.43
C9orf3-215ENST00000478473 FABP2P12104 132 aa12.36□□□□□ -0.43
C9orf3-215ENST00000478473 OBSCN-AS1Q96MR7 158 aa12.36□□□□□ -0.43
C9orf3-215ENST00000478473 UQCR10Q9UDW1 63 aa12.36□□□□□ -0.43
C9orf3-215ENST00000478473 A0A087WSZ3 146 aa12.34□□□□□ -0.43
C9orf3-215ENST00000478473 Q96NJ1 140 aa12.34□□□□□ -0.43
C9orf3-215ENST00000478473 A0A1W2PNM2 257 aa12.33□□□□□ -0.44
C9orf3-215ENST00000478473 K7ERJ3 54 aa12.33□□□□□ -0.44
C9orf3-215ENST00000478473 COX6CP09669 75 aa12.32□□□□□ -0.44
C9orf3-215ENST00000478473 ORMDL1Q9P0S3 153 aa12.32□□□□□ -0.44
C9orf3-215ENST00000478473 DNAL4O96015 105 aa12.31□□□□□ -0.44
C9orf3-215ENST00000478473 PSMB2P49721 201 aa12.3□□□□□ -0.44
C9orf3-215ENST00000478473 LCE2DQ5TA82 110 aaPredicted RBP12.3□□□□□ -0.44
C9orf3-215ENST00000478473 TMEM256-PLSCR3K7ERE1 68 aa12.29□□□□□ -0.44
C9orf3-215ENST00000478473 TMA7Q9Y2S6 64 aaKnown RBP12.29□□□□□ -0.44
C9orf3-215ENST00000478473 C20orf166-AS1Q96NR2 134 aa12.28□□□□□ -0.44
C9orf3-215ENST00000478473 TRBV7-4A0A0J9YYF1 115 aa12.27□□□□□ -0.45
C9orf3-215ENST00000478473 ATP11AUNQ6ZP68 121 aa12.27□□□□□ -0.45
C9orf3-215ENST00000478473 ANKRD29Q8N6D5 301 aa12.25□□□□□ -0.45
C9orf3-215ENST00000478473 A8MUU9 505 aa12.24□□□□□ -0.45
C9orf3-215ENST00000478473 TRACP01848 142 aa12.24□□□□□ -0.45
C9orf3-215ENST00000478473 UBE2V1Q13404 147 aa12.24□□□□□ -0.45
C9orf3-215ENST00000478473 LORP23490 312 aaPredicted RBP12.18□□□□□ -0.46
C9orf3-215ENST00000478473 KRTAP9-6A0A140TA67 174 aa12.16□□□□□ -0.46
C9orf3-215ENST00000478473 COX6B2Q6YFQ2 88 aa12.15□□□□□ -0.46
C9orf3-215ENST00000478473 LINC00472Q9H8W2 130 aa12.15□□□□□ -0.46
C9orf3-215ENST00000478473 FLGP20930 4061 aaPredicted RBP12.14□□□□□ -0.47
C9orf3-215ENST00000478473 CCKP06307 115 aa12.14□□□□□ -0.47
C9orf3-215ENST00000478473 KRTAP10-6P60371 365 aaPredicted RBP12.14□□□□□ -0.47
C9orf3-215ENST00000478473 SCGB1C2P0DMR2 95 aa12.11□□□□□ -0.47
C9orf3-215ENST00000478473 DSCR10P59022 87 aa12.11□□□□□ -0.47
C9orf3-215ENST00000478473 SIGMAR1Q99720 223 aa12.11□□□□□ -0.47
C9orf3-215ENST00000478473 A0A1B0GV72 72 aa12.1□□□□□ -0.47
C9orf3-215ENST00000478473 IGKV4-1P06312 121 aa12.1□□□□□ -0.47
C9orf3-215ENST00000478473 KRTAP16-1A8MUX0 517 aa12.09□□□□□ -0.47
C9orf3-215ENST00000478473 LINC00313P59037 77 aa12.08□□□□□ -0.48
C9orf3-215ENST00000478473 RBM3P98179 157 aaKnown RBP12.08□□□□□ -0.48
C9orf3-215ENST00000478473 M0R143 59 aa12.03□□□□□ -0.48
C9orf3-215ENST00000478473 BAALC-AS2P0C853 105 aa12.03□□□□□ -0.48
C9orf3-215ENST00000478473 DSCR8Q96T75 97 aa12.03□□□□□ -0.48
C9orf3-215ENST00000478473 M0R2T5 61 aa12.02□□□□□ -0.49
C9orf3-215ENST00000478473 C21orf62-AS1Q17RA5 79 aa12.01□□□□□ -0.49
C9orf3-215ENST00000478473 NOTCH2NLQ7Z3S9 236 aa12.01□□□□□ -0.49
C9orf3-215ENST00000478473 SMIM6P0DI80 62 aa12□□□□□ -0.49
C9orf3-215ENST00000478473 DEFB116Q30KQ4 102 aa11.99□□□□□ -0.49
C9orf3-215ENST00000478473 C9JAW5 83 aa11.96□□□□□ -0.49
C9orf3-215ENST00000478473 ATXN8Q156A1 80 aa11.95□□□□□ -0.5
C9orf3-215ENST00000478473 VPS25Q9BRG1 176 aa11.95□□□□□ -0.5
C9orf3-215ENST00000478473 C8orf87E5RJ46 101 aa11.94□□□□□ -0.5
C9orf3-215ENST00000478473 Q6ZQT0 140 aa11.93□□□□□ -0.5
C9orf3-215ENST00000478473 TRBV20-1A0A075B6N2 111 aa11.92□□□□□ -0.5
C9orf3-215ENST00000478473 IGHV6-1A0A0B4J1U7 121 aa11.92□□□□□ -0.5
C9orf3-215ENST00000478473 A0A1B0GVX0 72 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms