RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 LCE2AQ5TA79 106 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-203ENST00000474056 KRTAP4-1Q9BYQ7 146 aa9.86□□□□□ -0.83
UPF3A-203ENST00000474056 Q5XG85 94 aa9.85□□□□□ -0.83
UPF3A-203ENST00000474056 C9orf92A6NGG3 77 aa9.83□□□□□ -0.84
UPF3A-203ENST00000474056 F8WEM9 126 aa9.83□□□□□ -0.84
UPF3A-203ENST00000474056 BVES-AS1Q5T3Y7 98 aa9.83□□□□□ -0.84
UPF3A-203ENST00000474056 HIGD1BQ9P298 99 aa9.83□□□□□ -0.84
UPF3A-203ENST00000474056 CFC1BP0CG36 223 aa9.82□□□□□ -0.84
UPF3A-203ENST00000474056 CFC1P0CG37 223 aa9.82□□□□□ -0.84
UPF3A-203ENST00000474056 C2orf91Q6ZV80 131 aa9.82□□□□□ -0.84
UPF3A-203ENST00000474056 VAMP8Q9BV40 100 aa9.82□□□□□ -0.84
UPF3A-203ENST00000474056 C1orf195Q5TG92 126 aa9.81□□□□□ -0.84
UPF3A-203ENST00000474056 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.79□□□□□ -0.84
UPF3A-203ENST00000474056 RAB37Q96AX2 223 aa9.79□□□□□ -0.84
UPF3A-203ENST00000474056 IGLV8-61A0A075B6I0 122 aa9.77□□□□□ -0.85
UPF3A-203ENST00000474056 A0A0B4J2C4 111 aa9.77□□□□□ -0.85
UPF3A-203ENST00000474056 IGFL1Q6UW32 110 aa9.76□□□□□ -0.85
UPF3A-203ENST00000474056 Q6JHZ5 121 aa9.75□□□□□ -0.85
UPF3A-203ENST00000474056 CLEC2BQ92478 149 aa9.75□□□□□ -0.85
UPF3A-203ENST00000474056 TCL1BO95988 128 aa9.74□□□□□ -0.85
UPF3A-203ENST00000474056 OCIAD2Q56VL3 154 aa9.74□□□□□ -0.85
UPF3A-203ENST00000474056 CEND1Q8N111 149 aa9.74□□□□□ -0.85
UPF3A-203ENST00000474056 PPDPFLQ8WWR9 84 aa9.73□□□□□ -0.85
UPF3A-203ENST00000474056 FAM218AQ96MZ4 157 aa9.72□□□□□ -0.85
UPF3A-203ENST00000474056 TRBV7-7A0A0K0K1E9 115 aa9.71□□□□□ -0.86
UPF3A-203ENST00000474056 FXYD2P54710 66 aa9.71□□□□□ -0.86
UPF3A-203ENST00000474056 PCOTHQ58A44 107 aa9.71□□□□□ -0.86
UPF3A-203ENST00000474056 PYY3Q5JQD4 70 aa9.71□□□□□ -0.86
UPF3A-203ENST00000474056 SNHG12Q9BXW3 62 aa9.71□□□□□ -0.86
UPF3A-203ENST00000474056 H0YGX0 51 aa9.69□□□□□ -0.86
UPF3A-203ENST00000474056 H3BUT2 72 aa9.69□□□□□ -0.86
UPF3A-203ENST00000474056 TMEM238LA0A1B0GVL6 79 aa9.68□□□□□ -0.86
UPF3A-203ENST00000474056 A6NJY4 79 aa9.68□□□□□ -0.86
UPF3A-203ENST00000474056 PRO1854Q9UHT4 67 aa9.67□□□□□ -0.86
UPF3A-203ENST00000474056 SNCGO76070 127 aa9.65□□□□□ -0.86
UPF3A-203ENST00000474056 TMA7Q9Y2S6 64 aaKnown RBP9.63□□□□□ -0.87
UPF3A-203ENST00000474056 A0A1B0GX51 115 aa9.62□□□□□ -0.87
UPF3A-203ENST00000474056 TRIAP1O43715 76 aa9.62□□□□□ -0.87
UPF3A-203ENST00000474056 RPL37P61927 97 aaKnown RBP9.62□□□□□ -0.87
UPF3A-203ENST00000474056 NDUFV3P56181 108 aaKnown RBP9.61□□□□□ -0.87
UPF3A-203ENST00000474056 HSD52Q0P140 79 aa9.61□□□□□ -0.87
UPF3A-203ENST00000474056 KRTAP9-2Q9BYQ4 174 aa9.6□□□□□ -0.87
UPF3A-203ENST00000474056 KRTAP19-2Q3LHN2 52 aa9.59□□□□□ -0.87
UPF3A-203ENST00000474056 K7ERJ3 54 aa9.58□□□□□ -0.88
UPF3A-203ENST00000474056 LCE2CQ5TA81 110 aa9.58□□□□□ -0.88
UPF3A-203ENST00000474056 Q6Q795 121 aa9.58□□□□□ -0.88
UPF3A-203ENST00000474056 LST1O00453 97 aa9.57□□□□□ -0.88
UPF3A-203ENST00000474056 FABP2P12104 132 aa9.56□□□□□ -0.88
UPF3A-203ENST00000474056 H3BMG7 143 aa9.55□□□□□ -0.88
UPF3A-203ENST00000474056 TEN1Q86WV5 123 aa9.55□□□□□ -0.88
UPF3A-203ENST00000474056 GHRHP01286 108 aa9.54□□□□□ -0.88
UPF3A-203ENST00000474056 UQCR10Q9UDW1 63 aa9.54□□□□□ -0.88
UPF3A-203ENST00000474056 SS18L2Q9UHA2 77 aa9.54□□□□□ -0.88
UPF3A-203ENST00000474056 A0A087WSZ3 146 aa9.52□□□□□ -0.89
UPF3A-203ENST00000474056 PSMB2P49721 201 aa9.52□□□□□ -0.89
UPF3A-203ENST00000474056 OBSCN-AS1Q96MR7 158 aa9.52□□□□□ -0.89
UPF3A-203ENST00000474056 DNAL4O96015 105 aa9.51□□□□□ -0.89
UPF3A-203ENST00000474056 A0A1W2PNM2 257 aa9.49□□□□□ -0.89
UPF3A-203ENST00000474056 ORMDL1Q9P0S3 153 aa9.49□□□□□ -0.89
UPF3A-203ENST00000474056 COX6CP09669 75 aa9.48□□□□□ -0.89
UPF3A-203ENST00000474056 Q96NJ1 140 aa9.48□□□□□ -0.89
UPF3A-203ENST00000474056 A0A1B0GV72 72 aa9.47□□□□□ -0.89
UPF3A-203ENST00000474056 MT1HP80294 61 aa9.46□□□□□ -0.9
UPF3A-203ENST00000474056 Q75L30 129 aa9.46□□□□□ -0.9
UPF3A-203ENST00000474056 H3BQ85 93 aa9.43□□□□□ -0.9
UPF3A-203ENST00000474056 TMEM256-PLSCR3K7ERE1 68 aa9.43□□□□□ -0.9
UPF3A-203ENST00000474056 ANKRD29Q8N6D5 301 aa9.43□□□□□ -0.9
UPF3A-203ENST00000474056 ATP11AUNQ6ZP68 121 aa9.41□□□□□ -0.9
UPF3A-203ENST00000474056 TRBV7-4A0A0J9YYF1 115 aa9.39□□□□□ -0.91
UPF3A-203ENST00000474056 TRACP01848 142 aa9.39□□□□□ -0.91
UPF3A-203ENST00000474056 SCGB1C2P0DMR2 95 aa9.38□□□□□ -0.91
UPF3A-203ENST00000474056 C20orf166-AS1Q96NR2 134 aa9.38□□□□□ -0.91
UPF3A-203ENST00000474056 SIGMAR1Q99720 223 aa9.38□□□□□ -0.91
UPF3A-203ENST00000474056 FLGP20930 4061 aaPredicted RBP9.37□□□□□ -0.91
UPF3A-203ENST00000474056 UBE2V1Q13404 147 aa9.37□□□□□ -0.91
UPF3A-203ENST00000474056 SMCPP49901 116 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-203ENST00000474056 DSCR10P59022 87 aa9.36□□□□□ -0.91
UPF3A-203ENST00000474056 A8MUU9 505 aa9.35□□□□□ -0.91
UPF3A-203ENST00000474056 CCKP06307 115 aa9.35□□□□□ -0.91
UPF3A-203ENST00000474056 COX6B2Q6YFQ2 88 aa9.35□□□□□ -0.91
UPF3A-203ENST00000474056 IGKV4-1P06312 121 aa9.33□□□□□ -0.92
UPF3A-203ENST00000474056 DEFB116Q30KQ4 102 aa9.31□□□□□ -0.92
UPF3A-203ENST00000474056 VPS25Q9BRG1 176 aa9.3□□□□□ -0.92
UPF3A-203ENST00000474056 LINC00472Q9H8W2 130 aa9.3□□□□□ -0.92
UPF3A-203ENST00000474056 RBM3P98179 157 aaKnown RBP9.29□□□□□ -0.92
UPF3A-203ENST00000474056 NAA38Q9BRA0 125 aaKnown RBP9.29□□□□□ -0.92
UPF3A-203ENST00000474056 M0R143 59 aa9.28□□□□□ -0.92
UPF3A-203ENST00000474056 KRTAP10-6P60371 365 aaPredicted RBP9.28□□□□□ -0.92
UPF3A-203ENST00000474056 KRTAP16-1A8MUX0 517 aa9.27□□□□□ -0.93
UPF3A-203ENST00000474056 BAALC-AS2P0C853 105 aa9.27□□□□□ -0.93
UPF3A-203ENST00000474056 LORP23490 312 aaPredicted RBP9.27□□□□□ -0.93
UPF3A-203ENST00000474056 LINC00313P59037 77 aa9.27□□□□□ -0.93
UPF3A-203ENST00000474056 NOTCH2NLQ7Z3S9 236 aa9.27□□□□□ -0.93
UPF3A-203ENST00000474056 KRTAP9-6A0A140TA67 174 aa9.26□□□□□ -0.93
UPF3A-203ENST00000474056 M0R2T5 61 aa9.26□□□□□ -0.93
UPF3A-203ENST00000474056 SMIM6P0DI80 62 aa9.26□□□□□ -0.93
UPF3A-203ENST00000474056 DSCR8Q96T75 97 aa9.26□□□□□ -0.93
UPF3A-203ENST00000474056 IGHV6-1A0A0B4J1U7 121 aa9.22□□□□□ -0.93
UPF3A-203ENST00000474056 ATXN8Q156A1 80 aa9.22□□□□□ -0.93
UPF3A-203ENST00000474056 C9JAW5 83 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms