RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HSBP1L1C9JCN9 74 aa8.86□□□□□ -0.99
CCDC28B-204ENST00000469003 HIST3H2BBQ8N257 126 aa8.86□□□□□ -0.99
CCDC28B-204ENST00000469003 HIST1H2BLQ99880 126 aa8.86□□□□□ -0.99
CCDC28B-204ENST00000469003 hADV29S1A0JD25 119 aa8.85□□□□□ -0.99
CCDC28B-204ENST00000469003 Q6ZQY7 126 aa8.85□□□□□ -0.99
CCDC28B-204ENST00000469003 S100A2P29034 98 aa8.84□□□□□ -0.99
CCDC28B-204ENST00000469003 Q6JHZ5 121 aa8.84□□□□□ -0.99
CCDC28B-204ENST00000469003 CFC1BP0CG36 223 aa8.83□□□□□ -1
CCDC28B-204ENST00000469003 CLEC2BQ92478 149 aa8.81□□□□□ -1
CCDC28B-204ENST00000469003 TRBV7-7A0A0K0K1E9 115 aa8.8□□□□□ -1
CCDC28B-204ENST00000469003 IGFL1Q6UW32 110 aa8.8□□□□□ -1
CCDC28B-204ENST00000469003 OCIAD2Q56VL3 154 aa8.79□□□□□ -1
CCDC28B-204ENST00000469003 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.79□□□□□ -1
CCDC28B-204ENST00000469003 BVES-AS1Q5T3Y7 98 aa8.77□□□□□ -1.01
CCDC28B-204ENST00000469003 PPDPFLQ8WWR9 84 aa8.77□□□□□ -1.01
CCDC28B-204ENST00000469003 HIST1H4GQ99525 98 aa8.76□□□□□ -1.01
CCDC28B-204ENST00000469003 C12orf57Q99622 126 aa8.76□□□□□ -1.01
CCDC28B-204ENST00000469003 S100A6P06703 90 aa8.75□□□□□ -1.01
CCDC28B-204ENST00000469003 LORP23490 312 aaPredicted RBP8.75□□□□□ -1.01
CCDC28B-204ENST00000469003 KRTAP10-6P60371 365 aaPredicted RBP8.75□□□□□ -1.01
CCDC28B-204ENST00000469003 COX6B2Q6YFQ2 88 aa8.73□□□□□ -1.01
CCDC28B-204ENST00000469003 SNHG12Q9BXW3 62 aa8.73□□□□□ -1.01
CCDC28B-204ENST00000469003 SCGB1D1O95968 90 aa8.72□□□□□ -1.01
CCDC28B-204ENST00000469003 COX8AP10176 69 aa8.72□□□□□ -1.01
CCDC28B-204ENST00000469003 M0R2T5 61 aa8.71□□□□□ -1.02
CCDC28B-204ENST00000469003 H3BUT2 72 aa8.7□□□□□ -1.02
CCDC28B-204ENST00000469003 Q75L30 129 aa8.7□□□□□ -1.02
CCDC28B-204ENST00000469003 OBSCN-AS1Q96MR7 158 aa8.7□□□□□ -1.02
CCDC28B-204ENST00000469003 TMA7Q9Y2S6 64 aaKnown RBP8.7□□□□□ -1.02
CCDC28B-204ENST00000469003 KRTAP9-7A8MTY7 169 aa8.69□□□□□ -1.02
CCDC28B-204ENST00000469003 LST1O00453 97 aa8.69□□□□□ -1.02
CCDC28B-204ENST00000469003 DLEU1O43261 78 aa8.69□□□□□ -1.02
CCDC28B-204ENST00000469003 S100A1P23297 94 aa8.68□□□□□ -1.02
CCDC28B-204ENST00000469003 FLGP20930 4061 aaPredicted RBP8.68□□□□□ -1.02
CCDC28B-204ENST00000469003 CFC1P0CG37 223 aa8.67□□□□□ -1.02
CCDC28B-204ENST00000469003 ATP11AUNQ6ZP68 121 aa8.67□□□□□ -1.02
CCDC28B-204ENST00000469003 SNCGO76070 127 aa8.66□□□□□ -1.02
CCDC28B-204ENST00000469003 RAB37Q96AX2 223 aa8.66□□□□□ -1.02
CCDC28B-204ENST00000469003 Q6Q795 121 aa8.65□□□□□ -1.02
CCDC28B-204ENST00000469003 SS18L2Q9UHA2 77 aa8.65□□□□□ -1.02
CCDC28B-204ENST00000469003 H0YGX0 51 aa8.64□□□□□ -1.03
CCDC28B-204ENST00000469003 A0A0B4J2C4 111 aa8.63□□□□□ -1.03
CCDC28B-204ENST00000469003 HIGD1BQ9P298 99 aa8.63□□□□□ -1.03
CCDC28B-204ENST00000469003 TEN1Q86WV5 123 aa8.62□□□□□ -1.03
CCDC28B-204ENST00000469003 C14orf144Q96I85 54 aa8.62□□□□□ -1.03
CCDC28B-204ENST00000469003 FAM218AQ96MZ4 157 aa8.62□□□□□ -1.03
CCDC28B-204ENST00000469003 Q96NJ1 140 aa8.62□□□□□ -1.03
CCDC28B-204ENST00000469003 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.61□□□□□ -1.03
CCDC28B-204ENST00000469003 NDUFV3P56181 108 aaKnown RBP8.61□□□□□ -1.03
CCDC28B-204ENST00000469003 SPATA45Q537H7 98 aa8.59□□□□□ -1.03
CCDC28B-204ENST00000469003 PAM16Q9Y3D7 125 aa8.59□□□□□ -1.03
CCDC28B-204ENST00000469003 C20orf166-AS1Q96NR2 134 aa8.58□□□□□ -1.04
CCDC28B-204ENST00000469003 A0A087WSZ3 146 aa8.57□□□□□ -1.04
CCDC28B-204ENST00000469003 A0A1B0GX51 115 aa8.57□□□□□ -1.04
CCDC28B-204ENST00000469003 C2orf91Q6ZV80 131 aa8.57□□□□□ -1.04
CCDC28B-204ENST00000469003 H3BMG7 143 aa8.56□□□□□ -1.04
CCDC28B-204ENST00000469003 GHRHP01286 108 aa8.56□□□□□ -1.04
CCDC28B-204ENST00000469003 A8MUU9 505 aa8.55□□□□□ -1.04
CCDC28B-204ENST00000469003 CEND1Q8N111 149 aa8.55□□□□□ -1.04
CCDC28B-204ENST00000469003 VAMP8Q9BV40 100 aa8.54□□□□□ -1.04
CCDC28B-204ENST00000469003 PRO1854Q9UHT4 67 aa8.54□□□□□ -1.04
CCDC28B-204ENST00000469003 TMEM238LA0A1B0GVL6 79 aa8.53□□□□□ -1.04
CCDC28B-204ENST00000469003 A6NJY4 79 aa8.53□□□□□ -1.04
CCDC28B-204ENST00000469003 FABP2P12104 132 aa8.53□□□□□ -1.04
CCDC28B-204ENST00000469003 A0A1W2PNM2 257 aa8.5□□□□□ -1.05
CCDC28B-204ENST00000469003 TRIAP1O43715 76 aa8.49□□□□□ -1.05
CCDC28B-204ENST00000469003 FXYD2P54710 66 aa8.49□□□□□ -1.05
CCDC28B-204ENST00000469003 DSCR10P59022 87 aa8.49□□□□□ -1.05
CCDC28B-204ENST00000469003 TRBV20-1A0A075B6N2 111 aa8.47□□□□□ -1.05
CCDC28B-204ENST00000469003 LCE2BO14633 110 aa8.47□□□□□ -1.05
CCDC28B-204ENST00000469003 SIGMAR1Q99720 223 aa8.47□□□□□ -1.05
CCDC28B-204ENST00000469003 TRBV7-4A0A0J9YYF1 115 aa8.44□□□□□ -1.06
CCDC28B-204ENST00000469003 H3BQ85 93 aa8.44□□□□□ -1.06
CCDC28B-204ENST00000469003 DNAL4O96015 105 aa8.44□□□□□ -1.06
CCDC28B-204ENST00000469003 ANKRD29Q8N6D5 301 aa8.44□□□□□ -1.06
CCDC28B-204ENST00000469003 ORMDL1Q9P0S3 153 aa8.44□□□□□ -1.06
CCDC28B-204ENST00000469003 LINC00313P59037 77 aa8.43□□□□□ -1.06
CCDC28B-204ENST00000469003 IGKV4-1P06312 121 aa8.42□□□□□ -1.06
CCDC28B-204ENST00000469003 A0A1B0GV72 72 aa8.4□□□□□ -1.06
CCDC28B-204ENST00000469003 KRTAP16-1A8MUX0 517 aa8.4□□□□□ -1.06
CCDC28B-204ENST00000469003 PSMB2P49721 201 aa8.4□□□□□ -1.06
CCDC28B-204ENST00000469003 HSD52Q0P140 79 aa8.4□□□□□ -1.06
CCDC28B-204ENST00000469003 TMEM256-PLSCR3K7ERE1 68 aa8.39□□□□□ -1.07
CCDC28B-204ENST00000469003 KRTAP9-8Q9BYQ0 159 aa8.39□□□□□ -1.07
CCDC28B-204ENST00000469003 SSPOA2VEC9 5147 aa8.38□□□□□ -1.07
CCDC28B-204ENST00000469003 COX6CP09669 75 aa8.38□□□□□ -1.07
CCDC28B-204ENST00000469003 K7ERJ3 54 aa8.37□□□□□ -1.07
CCDC28B-204ENST00000469003 LINC00472Q9H8W2 130 aa8.37□□□□□ -1.07
CCDC28B-204ENST00000469003 TRACP01848 142 aa8.36□□□□□ -1.07
CCDC28B-204ENST00000469003 CCKP06307 115 aa8.36□□□□□ -1.07
CCDC28B-204ENST00000469003 NOTCH2NLQ7Z3S9 236 aa8.36□□□□□ -1.07
CCDC28B-204ENST00000469003 DEFB116Q30KQ4 102 aa8.35□□□□□ -1.07
CCDC28B-204ENST00000469003 USH2AO75445 5202 aa8.35□□□□□ -1.07
CCDC28B-204ENST00000469003 UBE2V1Q13404 147 aa8.34□□□□□ -1.07
CCDC28B-204ENST00000469003 PYY3Q5JQD4 70 aa8.34□□□□□ -1.07
CCDC28B-204ENST00000469003 FAM236DA0A1B0GTK5 79 aa8.33□□□□□ -1.08
CCDC28B-204ENST00000469003 FAM236CP0DP71 79 aa8.33□□□□□ -1.08
CCDC28B-204ENST00000469003 IGHV6-1A0A0B4J1U7 121 aa8.32□□□□□ -1.08
CCDC28B-204ENST00000469003 HRES1P13985 223 aa8.3□□□□□ -1.08
CCDC28B-204ENST00000469003 MPLKIPQ8TAP9 179 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms