RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 SMIM29Q86T20 159 aa6.45□□□□□ -1.38
MSX1-202ENST00000468421 PPDPFLQ8WWR9 84 aa6.45□□□□□ -1.38
MSX1-202ENST00000468421 KRTAP3-3Q9BYR6 98 aa6.45□□□□□ -1.38
MSX1-202ENST00000468421 KRTAP3-2Q9BYR7 98 aa6.45□□□□□ -1.38
MSX1-202ENST00000468421 ZNF706Q9Y5V0 76 aaPredicted RBP6.45□□□□□ -1.38
MSX1-202ENST00000468421 A0A1B0GV72 72 aa6.44□□□□□ -1.38
MSX1-202ENST00000468421 H3BQ85 93 aa6.44□□□□□ -1.38
MSX1-202ENST00000468421 FAM229AH3BQW9 127 aa6.44□□□□□ -1.38
MSX1-202ENST00000468421 ETDBQ3ZM63 59 aa6.44□□□□□ -1.38
MSX1-202ENST00000468421 ANAPC11Q9NYG5 84 aa6.44□□□□□ -1.38
MSX1-202ENST00000468421 PKHD1L1Q86WI1 4243 aa6.43□□□□□ -1.38
MSX1-202ENST00000468421 GHRHP01286 108 aa6.43□□□□□ -1.38
MSX1-202ENST00000468421 PLA2G1BP04054 148 aaKnown RBP6.43□□□□□ -1.38
MSX1-202ENST00000468421 NDUFV3P56181 108 aaKnown RBP6.43□□□□□ -1.38
MSX1-202ENST00000468421 SPINK6Q6UWN8 80 aa6.43□□□□□ -1.38
MSX1-202ENST00000468421 LAMTOR3Q9UHA4 124 aa6.43□□□□□ -1.38
MSX1-202ENST00000468421 KRTAP1-4P0C5Y4 121 aa6.42□□□□□ -1.38
MSX1-202ENST00000468421 TEN1Q86WV5 123 aa6.42□□□□□ -1.38
MSX1-202ENST00000468421 Q8N1X5 172 aa6.42□□□□□ -1.38
MSX1-202ENST00000468421 OBSCN-AS1Q96MR7 158 aa6.41□□□□□ -1.38
MSX1-202ENST00000468421 HERC1Q15751 4861 aa6.39□□□□□ -1.39
MSX1-202ENST00000468421 SRRM2Q9UQ35 2752 aaKnown RBP6.39□□□□□ -1.39
MSX1-202ENST00000468421 C14orf132Q9NPU4 83 aa6.39□□□□□ -1.39
MSX1-202ENST00000468421 A0A087X002 238 aa6.38□□□□□ -1.39
MSX1-202ENST00000468421 IGLV9-49A0A0B4J1Y8 123 aa6.38□□□□□ -1.39
MSX1-202ENST00000468421 IGLV8-61A0A075B6I0 122 aa6.37□□□□□ -1.39
MSX1-202ENST00000468421 F8WEM9 126 aa6.37□□□□□ -1.39
MSX1-202ENST00000468421 JMJD7-PLA2G4BH0Y9G9 81 aa6.37□□□□□ -1.39
MSX1-202ENST00000468421 RBM3P98179 157 aaKnown RBP6.37□□□□□ -1.39
MSX1-202ENST00000468421 KRTAP13-2Q52LG2 175 aa6.37□□□□□ -1.39
MSX1-202ENST00000468421 A0A0G2JQZ4 141 aa6.36□□□□□ -1.39
MSX1-202ENST00000468421 TRBV7-4A0A0J9YYF1 115 aa6.36□□□□□ -1.39
MSX1-202ENST00000468421 FAM229BQ4G0N7 80 aa6.36□□□□□ -1.39
MSX1-202ENST00000468421 MOBPQ13875 183 aa6.35□□□□□ -1.39
MSX1-202ENST00000468421 C9orf153Q5TBE3 101 aa6.35□□□□□ -1.39
MSX1-202ENST00000468421 IGFL1Q6UW32 110 aa6.35□□□□□ -1.39
MSX1-202ENST00000468421 KRTAP4-5Q9BYR2 181 aa6.35□□□□□ -1.39
MSX1-202ENST00000468421 Q6ZQT0 140 aa6.34□□□□□ -1.39
MSX1-202ENST00000468421 Q8NBF4 154 aa6.34□□□□□ -1.39
MSX1-202ENST00000468421 LOC110117498A0A087WWA1 95 aa6.33□□□□□ -1.4
MSX1-202ENST00000468421 PRR26Q8N8Z3 221 aa6.33□□□□□ -1.4
MSX1-202ENST00000468421 DSCR8Q96T75 97 aa6.33□□□□□ -1.4
MSX1-202ENST00000468421 A0A1W2PNM2 257 aa6.32□□□□□ -1.4
MSX1-202ENST00000468421 CRYGAP11844 174 aa6.32□□□□□ -1.4
MSX1-202ENST00000468421 Q6JHZ5 121 aa6.31□□□□□ -1.4
MSX1-202ENST00000468421 CCKP06307 115 aa6.3□□□□□ -1.4
MSX1-202ENST00000468421 VPS25Q9BRG1 176 aa6.3□□□□□ -1.4
MSX1-202ENST00000468421 PDE6GP18545 87 aa6.29□□□□□ -1.4
MSX1-202ENST00000468421 SSBP3-AS1Q7Z2R9 100 aa6.28□□□□□ -1.4
MSX1-202ENST00000468421 TYMSOSQ8TAI1 123 aa6.28□□□□□ -1.4
MSX1-202ENST00000468421 HRCT1Q6UXD1 115 aa6.26□□□□□ -1.41
MSX1-202ENST00000468421 Q6Q795 121 aa6.25□□□□□ -1.41
MSX1-202ENST00000468421 FAT3Q8TDW7 4589 aa6.25□□□□□ -1.41
MSX1-202ENST00000468421 A0A087WSZ3 146 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 TRBV7-7A0A0K0K1E9 115 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 FAM240AA0A1B0GVK7 77 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 J3QR89 54 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 KRTAP10-8P60410 259 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 C21orf62-AS1Q17RA5 79 aa6.23□□□□□ -1.41
MSX1-202ENST00000468421 LRP1Q07954 4544 aaKnown RBP6.23□□□□□ -1.41
MSX1-202ENST00000468421 K7ERU9 68 aa6.22□□□□□ -1.41
MSX1-202ENST00000468421 CD164Q04900 197 aa6.22□□□□□ -1.41
MSX1-202ENST00000468421 LINC00846Q9NV44 126 aa6.22□□□□□ -1.41
MSX1-202ENST00000468421 DMBT1Q9UGM3 2413 aaPredicted RBP6.22□□□□□ -1.41
MSX1-202ENST00000468421 FLG2Q5D862 2391 aaPredicted RBP6.21□□□□□ -1.42
MSX1-202ENST00000468421 MT1HL1P0DM35 61 aa6.21□□□□□ -1.42
MSX1-202ENST00000468421 LINC00304Q8N9R0 145 aa6.21□□□□□ -1.42
MSX1-202ENST00000468421 TNXBP22105 4242 aa6.2□□□□□ -1.42
MSX1-202ENST00000468421 A0A1B0GW54 56 aa6.19□□□□□ -1.42
MSX1-202ENST00000468421 ACYP1P07311 99 aa6.19□□□□□ -1.42
MSX1-202ENST00000468421 MYCBP2O75592 4640 aa6.18□□□□□ -1.42
MSX1-202ENST00000468421 OXTP01178 125 aa6.18□□□□□ -1.42
MSX1-202ENST00000468421 CDIP1Q9H305 208 aa6.18□□□□□ -1.42
MSX1-202ENST00000468421 C4orf48Q5BLP8 95 aa6.17□□□□□ -1.42
MSX1-202ENST00000468421 Q6ZVQ6 151 aa6.17□□□□□ -1.42
MSX1-202ENST00000468421 SPINK1P00995 79 aa6.16□□□□□ -1.42
MSX1-202ENST00000468421 SPAG11AQ6PDA7 123 aa6.16□□□□□ -1.42
MSX1-202ENST00000468421 KRTAP29-1A8MX34 341 aaPredicted RBP6.15□□□□□ -1.42
MSX1-202ENST00000468421 Q96NJ1 140 aa6.15□□□□□ -1.42
MSX1-202ENST00000468421 NREPQ16612 68 aa6.14□□□□□ -1.43
MSX1-202ENST00000468421 Q5XG85 94 aa6.14□□□□□ -1.43
MSX1-202ENST00000468421 UBL5Q9BZL1 73 aa6.14□□□□□ -1.43
MSX1-202ENST00000468421 SS18L2Q9UHA2 77 aa6.14□□□□□ -1.43
MSX1-202ENST00000468421 RPS29P62273 56 aaKnown RBP6.13□□□□□ -1.43
MSX1-202ENST00000468421 LIMD2Q9BT23 127 aa6.13□□□□□ -1.43
MSX1-202ENST00000468421 LINC00472Q9H8W2 130 aa6.13□□□□□ -1.43
MSX1-202ENST00000468421 DEFB116Q30KQ4 102 aa6.12□□□□□ -1.43
MSX1-202ENST00000468421 ASB16-AS1Q495Z4 193 aa6.12□□□□□ -1.43
MSX1-202ENST00000468421 C1orf195Q5TG92 126 aa6.1□□□□□ -1.43
MSX1-202ENST00000468421 LINC00643Q86TS7 51 aa6.1□□□□□ -1.43
MSX1-202ENST00000468421 IGKV3D-7A0A0C4DH55 119 aa6.09□□□□□ -1.43
MSX1-202ENST00000468421 UBR4Q5T4S7 5183 aa6.09□□□□□ -1.44
MSX1-202ENST00000468421 BPY2O14599 106 aa6.07□□□□□ -1.44
MSX1-202ENST00000468421 IGKV4-1P06312 121 aa6.07□□□□□ -1.44
MSX1-202ENST00000468421 DSCR10P59022 87 aa6.07□□□□□ -1.44
MSX1-202ENST00000468421 SIGMAR1Q99720 223 aa6.07□□□□□ -1.44
MSX1-202ENST00000468421 RETNLBQ9BQ08 111 aa6.07□□□□□ -1.44
MSX1-202ENST00000468421 J3QL48 77 aa6.06□□□□□ -1.44
MSX1-202ENST00000468421 MT-ATP8P03928 68 aa6.06□□□□□ -1.44
MSX1-202ENST00000468421 CXCL6P80162 114 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms