RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 FLGP20930 4061 aaPredicted RBP11.17□□□□□ -0.62
COL9A3-207ENST00000467819 VAMP3Q15836 100 aa11.13□□□□□ -0.63
COL9A3-207ENST00000467819 LINC00575Q6W349 94 aa11.11□□□□□ -0.63
COL9A3-207ENST00000467819 Q6ZQY7 126 aa11.11□□□□□ -0.63
COL9A3-207ENST00000467819 hADV29S1A0JD25 119 aa11.08□□□□□ -0.64
COL9A3-207ENST00000467819 Q6JHZ5 121 aa11.07□□□□□ -0.64
COL9A3-207ENST00000467819 IGFL1Q6UW32 110 aa11.07□□□□□ -0.64
COL9A3-207ENST00000467819 CLEC2BQ92478 149 aa11.07□□□□□ -0.64
COL9A3-207ENST00000467819 TRBV7-7A0A0K0K1E9 115 aa11.06□□□□□ -0.64
COL9A3-207ENST00000467819 SNRPEP62304 92 aaKnown RBP11.06□□□□□ -0.64
COL9A3-207ENST00000467819 OBSCN-AS1Q96MR7 158 aa11.04□□□□□ -0.64
COL9A3-207ENST00000467819 OCIAD2Q56VL3 154 aa11.02□□□□□ -0.65
COL9A3-207ENST00000467819 Q6Q795 121 aa11□□□□□ -0.65
COL9A3-207ENST00000467819 ATP11AUNQ6ZP68 121 aa10.99□□□□□ -0.65
COL9A3-207ENST00000467819 HSBP1L1C9JCN9 74 aa10.98□□□□□ -0.65
COL9A3-207ENST00000467819 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.98□□□□□ -0.65
COL9A3-207ENST00000467819 Q75L30 129 aa10.98□□□□□ -0.65
COL9A3-207ENST00000467819 C12orf57Q99622 126 aa10.98□□□□□ -0.65
COL9A3-207ENST00000467819 H3BUT2 72 aa10.95□□□□□ -0.66
COL9A3-207ENST00000467819 HIST3H2BBQ8N257 126 aa10.95□□□□□ -0.66
COL9A3-207ENST00000467819 HIST1H2BLQ99880 126 aa10.95□□□□□ -0.66
COL9A3-207ENST00000467819 SNHG12Q9BXW3 62 aa10.95□□□□□ -0.66
COL9A3-207ENST00000467819 LST1O00453 97 aa10.94□□□□□ -0.66
COL9A3-207ENST00000467819 S100A2P29034 98 aa10.94□□□□□ -0.66
COL9A3-207ENST00000467819 BVES-AS1Q5T3Y7 98 aa10.94□□□□□ -0.66
COL9A3-207ENST00000467819 PPDPFLQ8WWR9 84 aa10.93□□□□□ -0.66
COL9A3-207ENST00000467819 Q96NJ1 140 aa10.92□□□□□ -0.66
COL9A3-207ENST00000467819 HIST1H4GQ99525 98 aa10.9□□□□□ -0.66
COL9A3-207ENST00000467819 SCGB1D1O95968 90 aa10.88□□□□□ -0.67
COL9A3-207ENST00000467819 SS18L2Q9UHA2 77 aa10.85□□□□□ -0.67
COL9A3-207ENST00000467819 C20orf166-AS1Q96NR2 134 aa10.81□□□□□ -0.68
COL9A3-207ENST00000467819 COX8AP10176 69 aa10.8□□□□□ -0.68
COL9A3-207ENST00000467819 TEN1Q86WV5 123 aa10.8□□□□□ -0.68
COL9A3-207ENST00000467819 A8MUU9 505 aa10.79□□□□□ -0.68
COL9A3-207ENST00000467819 S100A6P06703 90 aa10.79□□□□□ -0.68
COL9A3-207ENST00000467819 CFC1P0CG37 223 aa10.79□□□□□ -0.68
COL9A3-207ENST00000467819 RAB37Q96AX2 223 aa10.79□□□□□ -0.68
COL9A3-207ENST00000467819 A0A087WSZ3 146 aa10.78□□□□□ -0.68
COL9A3-207ENST00000467819 SNCGO76070 127 aa10.78□□□□□ -0.68
COL9A3-207ENST00000467819 NDUFV3P56181 108 aaKnown RBP10.78□□□□□ -0.68
COL9A3-207ENST00000467819 FAM218AQ96MZ4 157 aa10.77□□□□□ -0.69
COL9A3-207ENST00000467819 H0YGX0 51 aa10.75□□□□□ -0.69
COL9A3-207ENST00000467819 TRBV20-1A0A075B6N2 111 aa10.74□□□□□ -0.69
COL9A3-207ENST00000467819 DSCR10P59022 87 aa10.74□□□□□ -0.69
COL9A3-207ENST00000467819 DLEU1O43261 78 aa10.73□□□□□ -0.69
COL9A3-207ENST00000467819 H3BMG7 143 aa10.72□□□□□ -0.69
COL9A3-207ENST00000467819 KRTAP9-8Q9BYQ0 159 aa10.72□□□□□ -0.69
COL9A3-207ENST00000467819 A0A0B4J2C4 111 aa10.71□□□□□ -0.69
COL9A3-207ENST00000467819 C14orf144Q96I85 54 aa10.71□□□□□ -0.69
COL9A3-207ENST00000467819 SIGMAR1Q99720 223 aa10.7□□□□□ -0.7
COL9A3-207ENST00000467819 FABP2P12104 132 aa10.69□□□□□ -0.7
COL9A3-207ENST00000467819 HIGD1BQ9P298 99 aa10.67□□□□□ -0.7
COL9A3-207ENST00000467819 USH2AO75445 5202 aa10.66□□□□□ -0.7
COL9A3-207ENST00000467819 A0A1W2PNM2 257 aa10.65□□□□□ -0.7
COL9A3-207ENST00000467819 PAM16Q9Y3D7 125 aa10.65□□□□□ -0.7
COL9A3-207ENST00000467819 A0A1B0GX51 115 aa10.64□□□□□ -0.71
COL9A3-207ENST00000467819 GHRHP01286 108 aa10.64□□□□□ -0.71
COL9A3-207ENST00000467819 SSPOA2VEC9 5147 aa10.63□□□□□ -0.71
COL9A3-207ENST00000467819 SPATA45Q537H7 98 aa10.63□□□□□ -0.71
COL9A3-207ENST00000467819 C2orf91Q6ZV80 131 aa10.63□□□□□ -0.71
COL9A3-207ENST00000467819 FAM236DA0A1B0GTK5 79 aa10.62□□□□□ -0.71
COL9A3-207ENST00000467819 KRTAP16-1A8MUX0 517 aa10.62□□□□□ -0.71
COL9A3-207ENST00000467819 FAM236CP0DP71 79 aa10.62□□□□□ -0.71
COL9A3-207ENST00000467819 LINC00313P59037 77 aa10.62□□□□□ -0.71
COL9A3-207ENST00000467819 PRO1854Q9UHT4 67 aa10.61□□□□□ -0.71
COL9A3-207ENST00000467819 A0A1B0GV72 72 aa10.6□□□□□ -0.71
COL9A3-207ENST00000467819 IGKV4-1P06312 121 aa10.6□□□□□ -0.71
COL9A3-207ENST00000467819 CEND1Q8N111 149 aa10.6□□□□□ -0.71
COL9A3-207ENST00000467819 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.59□□□□□ -0.71
COL9A3-207ENST00000467819 TRIAP1O43715 76 aa10.58□□□□□ -0.72
COL9A3-207ENST00000467819 TMEM238LA0A1B0GVL6 79 aa10.57□□□□□ -0.72
COL9A3-207ENST00000467819 A6NJY4 79 aa10.57□□□□□ -0.72
COL9A3-207ENST00000467819 VAMP8Q9BV40 100 aa10.57□□□□□ -0.72
COL9A3-207ENST00000467819 MT2AP02795 61 aa10.56□□□□□ -0.72
COL9A3-207ENST00000467819 S100A1P23297 94 aa10.56□□□□□ -0.72
COL9A3-207ENST00000467819 ANKRD29Q8N6D5 301 aa10.56□□□□□ -0.72
COL9A3-207ENST00000467819 KRTAP9-7A8MTY7 169 aa10.55□□□□□ -0.72
COL9A3-207ENST00000467819 FXYD2P54710 66 aa10.55□□□□□ -0.72
COL9A3-207ENST00000467819 NOTCH2NLQ7Z3S9 236 aa10.55□□□□□ -0.72
COL9A3-207ENST00000467819 TRBV7-4A0A0J9YYF1 115 aa10.54□□□□□ -0.72
COL9A3-207ENST00000467819 DEFB116Q30KQ4 102 aa10.54□□□□□ -0.72
COL9A3-207ENST00000467819 DNAL4O96015 105 aa10.53□□□□□ -0.72
COL9A3-207ENST00000467819 ORMDL1Q9P0S3 153 aa10.52□□□□□ -0.73
COL9A3-207ENST00000467819 RBM12B-AS1Q9P1G2 102 aa10.52□□□□□ -0.73
COL9A3-207ENST00000467819 HRES1P13985 223 aa10.51□□□□□ -0.73
COL9A3-207ENST00000467819 KRTAP3-3Q9BYR6 98 aa10.5□□□□□ -0.73
COL9A3-207ENST00000467819 KRTAP3-2Q9BYR7 98 aa10.5□□□□□ -0.73
COL9A3-207ENST00000467819 IGHV6-1A0A0B4J1U7 121 aa10.49□□□□□ -0.73
COL9A3-207ENST00000467819 MPLKIPQ8TAP9 179 aa10.49□□□□□ -0.73
COL9A3-207ENST00000467819 MT1FP04733 61 aa10.48□□□□□ -0.73
COL9A3-207ENST00000467819 LINC00472Q9H8W2 130 aa10.48□□□□□ -0.73
COL9A3-207ENST00000467819 TRACP01848 142 aa10.47□□□□□ -0.73
COL9A3-207ENST00000467819 CCKP06307 115 aa10.47□□□□□ -0.73
COL9A3-207ENST00000467819 H3BQ85 93 aa10.46□□□□□ -0.73
COL9A3-207ENST00000467819 PSMB2P49721 201 aa10.46□□□□□ -0.73
COL9A3-207ENST00000467819 TMEM256-PLSCR3K7ERE1 68 aa10.44□□□□□ -0.74
COL9A3-207ENST00000467819 K7ERJ3 54 aa10.44□□□□□ -0.74
COL9A3-207ENST00000467819 LCE2BO14633 110 aa10.43□□□□□ -0.74
COL9A3-207ENST00000467819 KRTAP10-10P60014 251 aa10.43□□□□□ -0.74
COL9A3-207ENST00000467819 FCGBPQ9Y6R7 5405 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms