RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ATP5EP56381 51 aaPredicted RBP7.94□□□□□ -1.14
HDAC4-208ENST00000463007 MRPL55Q7Z7F7 128 aaKnown RBP7.94□□□□□ -1.14
HDAC4-208ENST00000463007 IGLV1-50A0A075B6I6 118 aa7.94□□□□□ -1.14
HDAC4-208ENST00000463007 PSCAO43653 123 aa7.94□□□□□ -1.14
HDAC4-208ENST00000463007 KRTAP7-1Q8IUC3 87 aa7.93□□□□□ -1.14
HDAC4-208ENST00000463007 LINC00476Q8WZB0 136 aa7.93□□□□□ -1.14
HDAC4-208ENST00000463007 K7EIL1 84 aa7.93□□□□□ -1.14
HDAC4-208ENST00000463007 LINC00588Q9Y4M8 146 aa7.92□□□□□ -1.14
HDAC4-208ENST00000463007 LINC00208Q96KT6 92 aa7.92□□□□□ -1.14
HDAC4-208ENST00000463007 DNAH10Q8IVF4 4471 aa7.91□□□□□ -1.14
HDAC4-208ENST00000463007 PMAIP1Q13794 54 aa7.9□□□□□ -1.14
HDAC4-208ENST00000463007 HCG22E2RYF7 251 aa7.89□□□□□ -1.15
HDAC4-208ENST00000463007 TLX1NBP0CAT3 122 aa7.89□□□□□ -1.15
HDAC4-208ENST00000463007 REG3GQ6UW15 175 aa7.89□□□□□ -1.15
HDAC4-208ENST00000463007 IGFL1Q6UW32 110 aa7.88□□□□□ -1.15
HDAC4-208ENST00000463007 hDV103S1A0JD37 113 aa7.87□□□□□ -1.15
HDAC4-208ENST00000463007 CHTF8P0CG12 524 aa7.87□□□□□ -1.15
HDAC4-208ENST00000463007 DNAH7Q8WXX0 4024 aa7.87□□□□□ -1.15
HDAC4-208ENST00000463007 KRTAP4-16G5E9R7 235 aaPredicted RBP7.87□□□□□ -1.15
HDAC4-208ENST00000463007 PLA2G2DQ9UNK4 145 aa7.86□□□□□ -1.15
HDAC4-208ENST00000463007 A8MU10 97 aa7.85□□□□□ -1.15
HDAC4-208ENST00000463007 TNP2Q05952 138 aa7.85□□□□□ -1.15
HDAC4-208ENST00000463007 IGLV5-37A0A075B6J1 123 aa7.84□□□□□ -1.15
HDAC4-208ENST00000463007 UBE2AP49459 152 aa7.84□□□□□ -1.15
HDAC4-208ENST00000463007 A8MUN3 132 aa7.84□□□□□ -1.15
HDAC4-208ENST00000463007 H0Y9J4 135 aa7.83□□□□□ -1.16
HDAC4-208ENST00000463007 MP68P56378 58 aa7.83□□□□□ -1.16
HDAC4-208ENST00000463007 SPRR4Q96PI1 79 aa7.82□□□□□ -1.16
HDAC4-208ENST00000463007 TRAV22A0A0B4J277 110 aa7.82□□□□□ -1.16
HDAC4-208ENST00000463007 PHF5AQ7RTV0 110 aaKnown RBP7.81□□□□□ -1.16
HDAC4-208ENST00000463007 SPRR1AP35321 89 aa7.81□□□□□ -1.16
HDAC4-208ENST00000463007 PLECQ15149 4684 aaKnown RBP7.79□□□□□ -1.16
HDAC4-208ENST00000463007 KRTAP1-5Q9BYS1 174 aa7.79□□□□□ -1.16
HDAC4-208ENST00000463007 H0Y9P7 68 aa7.79□□□□□ -1.16
HDAC4-208ENST00000463007 CASC2Q6XLA1 102 aa7.79□□□□□ -1.16
HDAC4-208ENST00000463007 PCOTHQ58A44 107 aa7.78□□□□□ -1.16
HDAC4-208ENST00000463007 KRTAP11-1Q8IUC1 163 aa7.78□□□□□ -1.16
HDAC4-208ENST00000463007 SPTSSBQ8NFR3 76 aa7.77□□□□□ -1.16
HDAC4-208ENST00000463007 ZCCHC13Q8WW36 166 aaKnown RBP7.77□□□□□ -1.17
HDAC4-208ENST00000463007 PRKDCP78527 4128 aaKnown RBP7.76□□□□□ -1.17
HDAC4-208ENST00000463007 B9D2Q9BPU9 175 aa7.75□□□□□ -1.17
HDAC4-208ENST00000463007 IGLV9-49A0A0B4J1Y8 123 aa7.75□□□□□ -1.17
HDAC4-208ENST00000463007 CHKB-CPT1BH3BT56 60 aa7.74□□□□□ -1.17
HDAC4-208ENST00000463007 UBE2DNLQ8IWF7 75 aa7.74□□□□□ -1.17
HDAC4-208ENST00000463007 NDUFS5O43920 106 aa7.73□□□□□ -1.17
HDAC4-208ENST00000463007 STARD9Q9P2P6 4700 aa7.73□□□□□ -1.17
HDAC4-208ENST00000463007 APLNQ9ULZ1 77 aa7.73□□□□□ -1.17
HDAC4-208ENST00000463007 VPS13DQ5THJ4 4388 aa7.73□□□□□ -1.17
HDAC4-208ENST00000463007 PRR15LQ9BU68 103 aa7.73□□□□□ -1.17
HDAC4-208ENST00000463007 CNBPP62633 177 aaKnown RBP7.72□□□□□ -1.17
HDAC4-208ENST00000463007 LCE6AA0A183 80 aa7.71□□□□□ -1.17
HDAC4-208ENST00000463007 Q1T7F1 81 aa7.71□□□□□ -1.18
HDAC4-208ENST00000463007 A0A1B0GW54 56 aa7.7□□□□□ -1.18
HDAC4-208ENST00000463007 PRR15Q8IV56 129 aa7.7□□□□□ -1.18
HDAC4-208ENST00000463007 NDUFB1O75438 58 aa7.7□□□□□ -1.18
HDAC4-208ENST00000463007 MDFIQ99750 246 aa7.7□□□□□ -1.18
HDAC4-208ENST00000463007 CD164Q04900 197 aa7.69□□□□□ -1.18
HDAC4-208ENST00000463007 TGP01266 2768 aa7.68□□□□□ -1.18
HDAC4-208ENST00000463007 C16orf90A8MZG2 172 aa7.68□□□□□ -1.18
HDAC4-208ENST00000463007 ANAPC11Q9NYG5 84 aa7.68□□□□□ -1.18
HDAC4-208ENST00000463007 C4orf48Q5BLP8 95 aa7.67□□□□□ -1.18
HDAC4-208ENST00000463007 PANO1I0J062 215 aa7.65□□□□□ -1.18
HDAC4-208ENST00000463007 IGHV6-1A0A0B4J1U7 121 aa7.65□□□□□ -1.19
HDAC4-208ENST00000463007 A6NED7 52 aa7.65□□□□□ -1.19
HDAC4-208ENST00000463007 Q5VV11 94 aa7.65□□□□□ -1.19
HDAC4-208ENST00000463007 SPAG11AQ6PDA7 123 aa7.65□□□□□ -1.19
HDAC4-208ENST00000463007 CYP4F30PQ9H0H9 118 aa7.65□□□□□ -1.19
HDAC4-208ENST00000463007 HECTD4Q9Y4D8 3996 aa7.64□□□□□ -1.19
HDAC4-208ENST00000463007 KRTAP29-1A8MX34 341 aaPredicted RBP7.64□□□□□ -1.19
HDAC4-208ENST00000463007 A8MWP4 228 aa7.64□□□□□ -1.19
HDAC4-208ENST00000463007 Q6ZRN7 208 aaPredicted RBP7.63□□□□□ -1.19
HDAC4-208ENST00000463007 SPINK6Q6UWN8 80 aa7.63□□□□□ -1.19
HDAC4-208ENST00000463007 Q8N9P0 234 aaPredicted RBP7.62□□□□□ -1.19
HDAC4-208ENST00000463007 COA5Q86WW8 74 aa7.61□□□□□ -1.19
HDAC4-208ENST00000463007 LINC00472Q9H8W2 130 aa7.61□□□□□ -1.19
HDAC4-208ENST00000463007 DNAH2Q9P225 4427 aa7.61□□□□□ -1.19
HDAC4-208ENST00000463007 RBM12B-AS1Q9P1G2 102 aa7.61□□□□□ -1.19
HDAC4-208ENST00000463007 KMT2AQ03164 3969 aa7.59□□□□□ -1.19
HDAC4-208ENST00000463007 DNHD1Q96M86 4753 aa7.58□□□□□ -1.2
HDAC4-208ENST00000463007 MMP24-AS1A0A0U1RRL7 71 aa7.57□□□□□ -1.2
HDAC4-208ENST00000463007 DNAH17Q9UFH2 4485 aa7.57□□□□□ -1.2
HDAC4-208ENST00000463007 NBDYA0A0U1RRE5 68 aa7.57□□□□□ -1.2
HDAC4-208ENST00000463007 C9orf163Q8N9P6 203 aa7.57□□□□□ -1.2
HDAC4-208ENST00000463007 C14orf177Q52M58 125 aa7.56□□□□□ -1.2
HDAC4-208ENST00000463007 IGLV8-61A0A075B6I0 122 aa7.56□□□□□ -1.2
HDAC4-208ENST00000463007 MEGF8Q7Z7M0 2845 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 FBN3Q75N90 2809 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 DNAH6Q9C0G6 4158 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 NUPR2A6NF83 97 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 CDK2AP2O75956 126 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 MOBPQ13875 183 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 RETNLBQ9BQ08 111 aa7.55□□□□□ -1.2
HDAC4-208ENST00000463007 A0A087X002 238 aa7.54□□□□□ -1.2
HDAC4-208ENST00000463007 NOTCH2NLQ7Z3S9 236 aa7.54□□□□□ -1.2
HDAC4-208ENST00000463007 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.53□□□□□ -1.2
HDAC4-208ENST00000463007 LIMD2Q9BT23 127 aa7.53□□□□□ -1.2
HDAC4-208ENST00000463007 LCA10Q71F78 164 aa7.53□□□□□ -1.2
HDAC4-208ENST00000463007 SPRR1BP22528 89 aa7.51□□□□□ -1.21
HDAC4-208ENST00000463007 KTN1-AS1Q86SY8 53 aa7.51□□□□□ -1.21
HDAC4-208ENST00000463007 KRTAP13-1Q8IUC0 172 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms