RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 LIMD2Q9BT23 127 aa10.34□□□□□ -0.75
HOXD3-204ENST00000459979 A0A0B4J2C4 111 aa10.31□□□□□ -0.76
HOXD3-204ENST00000459979 PYY3Q5JQD4 70 aa10.31□□□□□ -0.76
HOXD3-204ENST00000459979 Q5XG85 94 aa10.3□□□□□ -0.76
HOXD3-204ENST00000459979 HRCT1Q6UXD1 115 aa10.3□□□□□ -0.76
HOXD3-204ENST00000459979 Q6ZQY7 126 aa10.3□□□□□ -0.76
HOXD3-204ENST00000459979 H7C2G1 150 aa10.29□□□□□ -0.76
HOXD3-204ENST00000459979 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.29□□□□□ -0.76
HOXD3-204ENST00000459979 CEND1Q8N111 149 aa10.28□□□□□ -0.76
HOXD3-204ENST00000459979 RAB37Q96AX2 223 aa10.28□□□□□ -0.76
HOXD3-204ENST00000459979 PPDPFLQ8WWR9 84 aa10.26□□□□□ -0.77
HOXD3-204ENST00000459979 IGLV8-61A0A075B6I0 122 aa10.25□□□□□ -0.77
HOXD3-204ENST00000459979 LCE2BO14633 110 aa10.25□□□□□ -0.77
HOXD3-204ENST00000459979 TMEM238LA0A1B0GVL6 79 aa10.24□□□□□ -0.77
HOXD3-204ENST00000459979 A6NJY4 79 aa10.24□□□□□ -0.77
HOXD3-204ENST00000459979 F8WEM9 126 aa10.24□□□□□ -0.77
HOXD3-204ENST00000459979 H0YGX0 51 aa10.24□□□□□ -0.77
HOXD3-204ENST00000459979 ASB16-AS1Q495Z4 193 aa10.23□□□□□ -0.77
HOXD3-204ENST00000459979 TMA7Q9Y2S6 64 aaKnown RBP10.23□□□□□ -0.77
HOXD3-204ENST00000459979 A0A0G2JQZ4 141 aa10.22□□□□□ -0.77
HOXD3-204ENST00000459979 PRO1854Q9UHT4 67 aa10.22□□□□□ -0.77
HOXD3-204ENST00000459979 FXYD2P54710 66 aa10.21□□□□□ -0.77
HOXD3-204ENST00000459979 Q6JHZ5 121 aa10.21□□□□□ -0.77
HOXD3-204ENST00000459979 OCIAD2Q56VL3 154 aa10.2□□□□□ -0.78
HOXD3-204ENST00000459979 XP32Q5T750 250 aa10.2□□□□□ -0.78
HOXD3-204ENST00000459979 KRTAP4-1Q9BYQ7 146 aa10.2□□□□□ -0.78
HOXD3-204ENST00000459979 SNCGO76070 127 aa10.19□□□□□ -0.78
HOXD3-204ENST00000459979 HSD52Q0P140 79 aa10.18□□□□□ -0.78
HOXD3-204ENST00000459979 SEC61BP60468 96 aaKnown RBP10.17□□□□□ -0.78
HOXD3-204ENST00000459979 C1orf195Q5TG92 126 aa10.17□□□□□ -0.78
HOXD3-204ENST00000459979 CLEC2BQ92478 149 aa10.17□□□□□ -0.78
HOXD3-204ENST00000459979 FAM218AQ96MZ4 157 aa10.17□□□□□ -0.78
HOXD3-204ENST00000459979 A0A1B0GX51 115 aa10.16□□□□□ -0.78
HOXD3-204ENST00000459979 SNHG12Q9BXW3 62 aa10.16□□□□□ -0.78
HOXD3-204ENST00000459979 TCL1BO95988 128 aa10.15□□□□□ -0.78
HOXD3-204ENST00000459979 IGFL1Q6UW32 110 aa10.15□□□□□ -0.78
HOXD3-204ENST00000459979 UQCR10Q9UDW1 63 aa10.15□□□□□ -0.78
HOXD3-204ENST00000459979 TRBV7-7A0A0K0K1E9 115 aa10.11□□□□□ -0.79
HOXD3-204ENST00000459979 GHRHP01286 108 aa10.11□□□□□ -0.79
HOXD3-204ENST00000459979 TRIAP1O43715 76 aa10.1□□□□□ -0.79
HOXD3-204ENST00000459979 NDUFV3P56181 108 aaKnown RBP10.08□□□□□ -0.8
HOXD3-204ENST00000459979 C9orf92A6NGG3 77 aa10.07□□□□□ -0.8
HOXD3-204ENST00000459979 H3BUT2 72 aa10.07□□□□□ -0.8
HOXD3-204ENST00000459979 Q6Q795 121 aa10.06□□□□□ -0.8
HOXD3-204ENST00000459979 K7ERJ3 54 aa10.05□□□□□ -0.8
HOXD3-204ENST00000459979 COX6CP09669 75 aa10.03□□□□□ -0.8
HOXD3-204ENST00000459979 PSMB2P49721 201 aa10.02□□□□□ -0.81
HOXD3-204ENST00000459979 H3BQ85 93 aa10.01□□□□□ -0.81
HOXD3-204ENST00000459979 TEN1Q86WV5 123 aa10.01□□□□□ -0.81
HOXD3-204ENST00000459979 H3BMG7 143 aa10□□□□□ -0.81
HOXD3-204ENST00000459979 FABP2P12104 132 aa10□□□□□ -0.81
HOXD3-204ENST00000459979 DNAL4O96015 105 aa9.99□□□□□ -0.81
HOXD3-204ENST00000459979 ORMDL1Q9P0S3 153 aa9.98□□□□□ -0.81
HOXD3-204ENST00000459979 CRCT1Q9UGL9 99 aa9.98□□□□□ -0.81
HOXD3-204ENST00000459979 SS18L2Q9UHA2 77 aa9.98□□□□□ -0.81
HOXD3-204ENST00000459979 LCE2CQ5TA81 110 aa9.97□□□□□ -0.81
HOXD3-204ENST00000459979 LST1O00453 97 aa9.96□□□□□ -0.82
HOXD3-204ENST00000459979 PCOTHQ58A44 107 aa9.96□□□□□ -0.82
HOXD3-204ENST00000459979 TMEM256-PLSCR3K7ERE1 68 aa9.95□□□□□ -0.82
HOXD3-204ENST00000459979 SMIM6P0DI80 62 aa9.94□□□□□ -0.82
HOXD3-204ENST00000459979 TRACP01848 142 aa9.93□□□□□ -0.82
HOXD3-204ENST00000459979 RPL37P61927 97 aaKnown RBP9.93□□□□□ -0.82
HOXD3-204ENST00000459979 A0A1W2PNM2 257 aa9.91□□□□□ -0.82
HOXD3-204ENST00000459979 KRTAP19-2Q3LHN2 52 aa9.91□□□□□ -0.82
HOXD3-204ENST00000459979 A0A087WSZ3 146 aa9.9□□□□□ -0.82
HOXD3-204ENST00000459979 UBE2V1Q13404 147 aa9.9□□□□□ -0.82
HOXD3-204ENST00000459979 FSIP2Q5CZC0 6907 aa9.9□□□□□ -0.83
HOXD3-204ENST00000459979 M0R143 59 aa9.89□□□□□ -0.83
HOXD3-204ENST00000459979 SCGB1C2P0DMR2 95 aa9.89□□□□□ -0.83
HOXD3-204ENST00000459979 ANKRD29Q8N6D5 301 aa9.89□□□□□ -0.83
HOXD3-204ENST00000459979 SMCPP49901 116 aaPredicted RBP9.88□□□□□ -0.83
HOXD3-204ENST00000459979 TRBV7-4A0A0J9YYF1 115 aa9.87□□□□□ -0.83
HOXD3-204ENST00000459979 MT1HP80294 61 aa9.87□□□□□ -0.83
HOXD3-204ENST00000459979 Q96NJ1 140 aa9.86□□□□□ -0.83
HOXD3-204ENST00000459979 OBSCN-AS1Q96MR7 158 aa9.84□□□□□ -0.83
HOXD3-204ENST00000459979 Q75L30 129 aa9.82□□□□□ -0.84
HOXD3-204ENST00000459979 A0A1B0GV72 72 aa9.79□□□□□ -0.84
HOXD3-204ENST00000459979 CCKP06307 115 aa9.79□□□□□ -0.84
HOXD3-204ENST00000459979 TSTD3H0UI37 97 aa9.78□□□□□ -0.84
HOXD3-204ENST00000459979 BAALC-AS2P0C853 105 aa9.78□□□□□ -0.84
HOXD3-204ENST00000459979 RBM3P98179 157 aaKnown RBP9.78□□□□□ -0.84
HOXD3-204ENST00000459979 LOC105371267A0A1B0GV96 52 aa9.77□□□□□ -0.85
HOXD3-204ENST00000459979 ATXN8Q156A1 80 aa9.75□□□□□ -0.85
HOXD3-204ENST00000459979 C20orf166-AS1Q96NR2 134 aa9.75□□□□□ -0.85
HOXD3-204ENST00000459979 ATP11AUNQ6ZP68 121 aa9.74□□□□□ -0.85
HOXD3-204ENST00000459979 DSCR8Q96T75 97 aa9.74□□□□□ -0.85
HOXD3-204ENST00000459979 LINC00472Q9H8W2 130 aa9.74□□□□□ -0.85
HOXD3-204ENST00000459979 LORP23490 312 aaPredicted RBP9.73□□□□□ -0.85
HOXD3-204ENST00000459979 KRTAP10-6P60371 365 aaPredicted RBP9.73□□□□□ -0.85
HOXD3-204ENST00000459979 NAA38Q9BRA0 125 aaKnown RBP9.73□□□□□ -0.85
HOXD3-204ENST00000459979 A8MUU9 505 aa9.72□□□□□ -0.85
HOXD3-204ENST00000459979 IGKV4-1P06312 121 aa9.71□□□□□ -0.86
HOXD3-204ENST00000459979 SIGMAR1Q99720 223 aa9.71□□□□□ -0.86
HOXD3-204ENST00000459979 C21orf62-AS1Q17RA5 79 aa9.7□□□□□ -0.86
HOXD3-204ENST00000459979 C9JAW5 83 aa9.69□□□□□ -0.86
HOXD3-204ENST00000459979 LYRM7Q5U5X0 104 aa9.69□□□□□ -0.86
HOXD3-204ENST00000459979 JMJD7-PLA2G4BH0Y9G9 81 aa9.68□□□□□ -0.86
HOXD3-204ENST00000459979 TRBV20-1A0A075B6N2 111 aa9.67□□□□□ -0.86
HOXD3-204ENST00000459979 DSCR10P59022 87 aa9.67□□□□□ -0.86
HOXD3-204ENST00000459979 LINC00313P59037 77 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms