RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 KRTAP13-3Q3SY46 172 aa9.73□□□□□ -0.85
USP39-208ENST00000455732 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.73□□□□□ -0.85
USP39-208ENST00000455732 MUC17Q685J3 4493 aa9.72□□□□□ -0.85
USP39-208ENST00000455732 H7C2G1 150 aa9.72□□□□□ -0.85
USP39-208ENST00000455732 FXYD2P54710 66 aa9.71□□□□□ -0.86
USP39-208ENST00000455732 HSD52Q0P140 79 aa9.7□□□□□ -0.86
USP39-208ENST00000455732 HRCT1Q6UXD1 115 aa9.7□□□□□ -0.86
USP39-208ENST00000455732 PPDPFLQ8WWR9 84 aa9.7□□□□□ -0.86
USP39-208ENST00000455732 H0YGX0 51 aa9.69□□□□□ -0.86
USP39-208ENST00000455732 Q5XG85 94 aa9.69□□□□□ -0.86
USP39-208ENST00000455732 PRO1854Q9UHT4 67 aa9.69□□□□□ -0.86
USP39-208ENST00000455732 F8WEM9 126 aa9.68□□□□□ -0.86
USP39-208ENST00000455732 UQCR10Q9UDW1 63 aa9.68□□□□□ -0.86
USP39-208ENST00000455732 IGLV8-61A0A075B6I0 122 aa9.67□□□□□ -0.86
USP39-208ENST00000455732 SNCGO76070 127 aa9.65□□□□□ -0.86
USP39-208ENST00000455732 OCIAD2Q56VL3 154 aa9.64□□□□□ -0.87
USP39-208ENST00000455732 Q6JHZ5 121 aa9.64□□□□□ -0.87
USP39-208ENST00000455732 FAM218AQ96MZ4 157 aa9.64□□□□□ -0.87
USP39-208ENST00000455732 A0A0G2JQZ4 141 aa9.63□□□□□ -0.87
USP39-208ENST00000455732 A0A1B0GX51 115 aa9.63□□□□□ -0.87
USP39-208ENST00000455732 CLEC2BQ92478 149 aa9.61□□□□□ -0.87
USP39-208ENST00000455732 FAT4Q6V0I7 4981 aa9.6□□□□□ -0.87
USP39-208ENST00000455732 TRIAP1O43715 76 aa9.6□□□□□ -0.87
USP39-208ENST00000455732 KRTAP9-2Q9BYQ4 174 aa9.6□□□□□ -0.87
USP39-208ENST00000455732 IGFL1Q6UW32 110 aa9.59□□□□□ -0.87
USP39-208ENST00000455732 SNHG12Q9BXW3 62 aa9.59□□□□□ -0.87
USP39-208ENST00000455732 K7ERJ3 54 aa9.58□□□□□ -0.88
USP39-208ENST00000455732 TCL1BO95988 128 aa9.56□□□□□ -0.88
USP39-208ENST00000455732 GHRHP01286 108 aa9.56□□□□□ -0.88
USP39-208ENST00000455732 ASB16-AS1Q495Z4 193 aa9.56□□□□□ -0.88
USP39-208ENST00000455732 XP32Q5T750 250 aa9.56□□□□□ -0.88
USP39-208ENST00000455732 LCE2AQ5TA79 106 aaPredicted RBP9.56□□□□□ -0.88
USP39-208ENST00000455732 C1orf195Q5TG92 126 aa9.56□□□□□ -0.88
USP39-208ENST00000455732 TRBV7-7A0A0K0K1E9 115 aa9.54□□□□□ -0.88
USP39-208ENST00000455732 SMIM6P0DI80 62 aa9.54□□□□□ -0.88
USP39-208ENST00000455732 H3BUT2 72 aa9.53□□□□□ -0.88
USP39-208ENST00000455732 COX6CP09669 75 aa9.52□□□□□ -0.89
USP39-208ENST00000455732 PSMB2P49721 201 aa9.52□□□□□ -0.89
USP39-208ENST00000455732 NDUFV3P56181 108 aaKnown RBP9.52□□□□□ -0.89
USP39-208ENST00000455732 SEC61BP60468 96 aaKnown RBP9.51□□□□□ -0.89
USP39-208ENST00000455732 Q6Q795 121 aa9.49□□□□□ -0.89
USP39-208ENST00000455732 H3BQ85 93 aa9.48□□□□□ -0.89
USP39-208ENST00000455732 DNAL4O96015 105 aa9.48□□□□□ -0.89
USP39-208ENST00000455732 FABP2P12104 132 aa9.47□□□□□ -0.89
USP39-208ENST00000455732 KRTAP4-1Q9BYQ7 146 aa9.47□□□□□ -0.89
USP39-208ENST00000455732 C9orf92A6NGG3 77 aa9.46□□□□□ -0.9
USP39-208ENST00000455732 ORMDL1Q9P0S3 153 aa9.46□□□□□ -0.9
USP39-208ENST00000455732 H3BMG7 143 aa9.45□□□□□ -0.9
USP39-208ENST00000455732 TEN1Q86WV5 123 aa9.45□□□□□ -0.9
USP39-208ENST00000455732 M0R143 59 aa9.44□□□□□ -0.9
USP39-208ENST00000455732 TRACP01848 142 aa9.43□□□□□ -0.9
USP39-208ENST00000455732 TMEM256-PLSCR3K7ERE1 68 aa9.42□□□□□ -0.9
USP39-208ENST00000455732 SS18L2Q9UHA2 77 aa9.42□□□□□ -0.9
USP39-208ENST00000455732 LST1O00453 97 aa9.41□□□□□ -0.9
USP39-208ENST00000455732 SCGB1C2P0DMR2 95 aa9.39□□□□□ -0.91
USP39-208ENST00000455732 UBE2V1Q13404 147 aa9.38□□□□□ -0.91
USP39-208ENST00000455732 LOC105371267A0A1B0GV96 52 aa9.37□□□□□ -0.91
USP39-208ENST00000455732 TSTD3H0UI37 97 aa9.37□□□□□ -0.91
USP39-208ENST00000455732 A0A087WSZ3 146 aa9.36□□□□□ -0.91
USP39-208ENST00000455732 KRTAP9-6A0A140TA67 174 aa9.36□□□□□ -0.91
USP39-208ENST00000455732 A0A1W2PNM2 257 aa9.36□□□□□ -0.91
USP39-208ENST00000455732 ANKRD29Q8N6D5 301 aa9.34□□□□□ -0.91
USP39-208ENST00000455732 TRBV7-4A0A0J9YYF1 115 aa9.33□□□□□ -0.92
USP39-208ENST00000455732 RPL37P61927 97 aaKnown RBP9.33□□□□□ -0.92
USP39-208ENST00000455732 PCOTHQ58A44 107 aa9.33□□□□□ -0.92
USP39-208ENST00000455732 A0A1B0GV72 72 aa9.3□□□□□ -0.92
USP39-208ENST00000455732 Q96NJ1 140 aa9.3□□□□□ -0.92
USP39-208ENST00000455732 ATXN8Q156A1 80 aa9.28□□□□□ -0.92
USP39-208ENST00000455732 NAA38Q9BRA0 125 aaKnown RBP9.27□□□□□ -0.93
USP39-208ENST00000455732 CCKP06307 115 aa9.26□□□□□ -0.93
USP39-208ENST00000455732 BAALC-AS2P0C853 105 aa9.26□□□□□ -0.93
USP39-208ENST00000455732 RBM3P98179 157 aaKnown RBP9.26□□□□□ -0.93
USP39-208ENST00000455732 OBSCN-AS1Q96MR7 158 aa9.26□□□□□ -0.93
USP39-208ENST00000455732 LYRM7Q5U5X0 104 aa9.25□□□□□ -0.93
USP39-208ENST00000455732 KRTAP19-2Q3LHN2 52 aa9.23□□□□□ -0.93
USP39-208ENST00000455732 LCE2CQ5TA81 110 aa9.23□□□□□ -0.93
USP39-208ENST00000455732 Q75L30 129 aa9.23□□□□□ -0.93
USP39-208ENST00000455732 DSCR8Q96T75 97 aa9.23□□□□□ -0.93
USP39-208ENST00000455732 BATFQ16520 125 aa9.22□□□□□ -0.93
USP39-208ENST00000455732 TRBV20-1A0A075B6N2 111 aa9.2□□□□□ -0.94
USP39-208ENST00000455732 SIGMAR1Q99720 223 aa9.19□□□□□ -0.94
USP39-208ENST00000455732 LINC00472Q9H8W2 130 aa9.19□□□□□ -0.94
USP39-208ENST00000455732 C9JAW5 83 aa9.18□□□□□ -0.94
USP39-208ENST00000455732 C21orf62-AS1Q17RA5 79 aa9.18□□□□□ -0.94
USP39-208ENST00000455732 JMJD7-PLA2G4BH0Y9G9 81 aa9.17□□□□□ -0.94
USP39-208ENST00000455732 IGKV4-1P06312 121 aa9.17□□□□□ -0.94
USP39-208ENST00000455732 C20orf166-AS1Q96NR2 134 aa9.17□□□□□ -0.94
USP39-208ENST00000455732 VPS25Q9BRG1 176 aa9.17□□□□□ -0.94
USP39-208ENST00000455732 C9orf118A6NHY6 69 aa9.15□□□□□ -0.94
USP39-208ENST00000455732 A8MUU9 505 aa9.14□□□□□ -0.95
USP39-208ENST00000455732 TAX1BP3O14907 124 aa9.14□□□□□ -0.95
USP39-208ENST00000455732 ATP11AUNQ6ZP68 121 aa9.14□□□□□ -0.95
USP39-208ENST00000455732 LOC110117498A0A087WWA1 95 aa9.13□□□□□ -0.95
USP39-208ENST00000455732 DSCR10P59022 87 aa9.13□□□□□ -0.95
USP39-208ENST00000455732 A0A1B0GW54 56 aa9.12□□□□□ -0.95
USP39-208ENST00000455732 LCE2DQ5TA82 110 aaPredicted RBP9.12□□□□□ -0.95
USP39-208ENST00000455732 Q6ZQT0 140 aa9.12□□□□□ -0.95
USP39-208ENST00000455732 A0A1W2PPM0 123 aa9.11□□□□□ -0.95
USP39-208ENST00000455732 PDE6GP18545 87 aa9.11□□□□□ -0.95
USP39-208ENST00000455732 LINC00313P59037 77 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms