RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SPATA45Q537H7 98 aa11.61□□□□□ -0.55
HMGB3-205ENST00000455596 C1orf195Q5TG92 126 aa11.61□□□□□ -0.55
HMGB3-205ENST00000455596 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.6□□□□□ -0.55
HMGB3-205ENST00000455596 HIGD1BQ9P298 99 aa11.6□□□□□ -0.55
HMGB3-205ENST00000455596 VAMP8Q9BV40 100 aa11.59□□□□□ -0.55
HMGB3-205ENST00000455596 TCL1BO95988 128 aa11.58□□□□□ -0.56
HMGB3-205ENST00000455596 CFC1BP0CG36 223 aa11.57□□□□□ -0.56
HMGB3-205ENST00000455596 CFC1P0CG37 223 aa11.57□□□□□ -0.56
HMGB3-205ENST00000455596 Q6JHZ5 121 aa11.57□□□□□ -0.56
HMGB3-205ENST00000455596 RAB37Q96AX2 223 aa11.57□□□□□ -0.56
HMGB3-205ENST00000455596 FAT4Q6V0I7 4981 aa11.56□□□□□ -0.56
HMGB3-205ENST00000455596 PPDPFLQ8WWR9 84 aa11.56□□□□□ -0.56
HMGB3-205ENST00000455596 IGLV8-61A0A075B6I0 122 aa11.55□□□□□ -0.56
HMGB3-205ENST00000455596 OCIAD2Q56VL3 154 aa11.54□□□□□ -0.56
HMGB3-205ENST00000455596 CLEC2BQ92478 149 aa11.54□□□□□ -0.56
HMGB3-205ENST00000455596 A0A0B4J2C4 111 aa11.53□□□□□ -0.56
HMGB3-205ENST00000455596 IGFL1Q6UW32 110 aa11.53□□□□□ -0.56
HMGB3-205ENST00000455596 C2orf91Q6ZV80 131 aa11.53□□□□□ -0.56
HMGB3-205ENST00000455596 SNHG12Q9BXW3 62 aa11.52□□□□□ -0.57
HMGB3-205ENST00000455596 PCOTHQ58A44 107 aa11.51□□□□□ -0.57
HMGB3-205ENST00000455596 SNCGO76070 127 aa11.5□□□□□ -0.57
HMGB3-205ENST00000455596 TRBV7-7A0A0K0K1E9 115 aa11.49□□□□□ -0.57
HMGB3-205ENST00000455596 H0YGX0 51 aa11.49□□□□□ -0.57
HMGB3-205ENST00000455596 CEND1Q8N111 149 aa11.49□□□□□ -0.57
HMGB3-205ENST00000455596 TMEM238LA0A1B0GVL6 79 aa11.46□□□□□ -0.57
HMGB3-205ENST00000455596 A6NJY4 79 aa11.46□□□□□ -0.57
HMGB3-205ENST00000455596 PRO1854Q9UHT4 67 aa11.44□□□□□ -0.58
HMGB3-205ENST00000455596 H3BUT2 72 aa11.43□□□□□ -0.58
HMGB3-205ENST00000455596 FAM218AQ96MZ4 157 aa11.43□□□□□ -0.58
HMGB3-205ENST00000455596 KRTAP9-2Q9BYQ4 174 aa11.41□□□□□ -0.58
HMGB3-205ENST00000455596 FXYD2P54710 66 aa11.4□□□□□ -0.58
HMGB3-205ENST00000455596 RPL37P61927 97 aaKnown RBP11.4□□□□□ -0.58
HMGB3-205ENST00000455596 A0A1B0GX51 115 aa11.39□□□□□ -0.59
HMGB3-205ENST00000455596 PYY3Q5JQD4 70 aa11.39□□□□□ -0.59
HMGB3-205ENST00000455596 NDUFV3P56181 108 aaKnown RBP11.38□□□□□ -0.59
HMGB3-205ENST00000455596 GHRHP01286 108 aa11.37□□□□□ -0.59
HMGB3-205ENST00000455596 LST1O00453 97 aa11.35□□□□□ -0.59
HMGB3-205ENST00000455596 TRIAP1O43715 76 aa11.34□□□□□ -0.59
HMGB3-205ENST00000455596 Q6Q795 121 aa11.34□□□□□ -0.59
HMGB3-205ENST00000455596 HSD52Q0P140 79 aa11.33□□□□□ -0.6
HMGB3-205ENST00000455596 SS18L2Q9UHA2 77 aa11.33□□□□□ -0.6
HMGB3-205ENST00000455596 LCE2CQ5TA81 110 aa11.32□□□□□ -0.6
HMGB3-205ENST00000455596 TEN1Q86WV5 123 aa11.32□□□□□ -0.6
HMGB3-205ENST00000455596 FABP2P12104 132 aa11.31□□□□□ -0.6
HMGB3-205ENST00000455596 KRTAP19-2Q3LHN2 52 aa11.31□□□□□ -0.6
HMGB3-205ENST00000455596 H3BMG7 143 aa11.3□□□□□ -0.6
HMGB3-205ENST00000455596 TMA7Q9Y2S6 64 aaKnown RBP11.28□□□□□ -0.6
HMGB3-205ENST00000455596 PSMB2P49721 201 aa11.27□□□□□ -0.61
HMGB3-205ENST00000455596 OBSCN-AS1Q96MR7 158 aa11.27□□□□□ -0.61
HMGB3-205ENST00000455596 DNAL4O96015 105 aa11.26□□□□□ -0.61
HMGB3-205ENST00000455596 K7ERJ3 54 aa11.25□□□□□ -0.61
HMGB3-205ENST00000455596 UQCR10Q9UDW1 63 aa11.25□□□□□ -0.61
HMGB3-205ENST00000455596 A0A087WSZ3 146 aa11.24□□□□□ -0.61
HMGB3-205ENST00000455596 COX6CP09669 75 aa11.24□□□□□ -0.61
HMGB3-205ENST00000455596 ORMDL1Q9P0S3 153 aa11.23□□□□□ -0.61
HMGB3-205ENST00000455596 H3BQ85 93 aa11.22□□□□□ -0.61
HMGB3-205ENST00000455596 Q75L30 129 aa11.22□□□□□ -0.61
HMGB3-205ENST00000455596 MT1HP80294 61 aa11.21□□□□□ -0.61
HMGB3-205ENST00000455596 ATP11AUNQ6ZP68 121 aa11.2□□□□□ -0.62
HMGB3-205ENST00000455596 Q96NJ1 140 aa11.19□□□□□ -0.62
HMGB3-205ENST00000455596 A0A1W2PNM2 257 aa11.18□□□□□ -0.62
HMGB3-205ENST00000455596 TMEM256-PLSCR3K7ERE1 68 aa11.17□□□□□ -0.62
HMGB3-205ENST00000455596 ANKRD29Q8N6D5 301 aa11.17□□□□□ -0.62
HMGB3-205ENST00000455596 A0A1B0GV72 72 aa11.14□□□□□ -0.63
HMGB3-205ENST00000455596 TRBV7-4A0A0J9YYF1 115 aa11.13□□□□□ -0.63
HMGB3-205ENST00000455596 COX6B2Q6YFQ2 88 aa11.13□□□□□ -0.63
HMGB3-205ENST00000455596 UBE2V1Q13404 147 aa11.1□□□□□ -0.63
HMGB3-205ENST00000455596 C20orf166-AS1Q96NR2 134 aa11.1□□□□□ -0.63
HMGB3-205ENST00000455596 SIGMAR1Q99720 223 aa11.1□□□□□ -0.63
HMGB3-205ENST00000455596 TRACP01848 142 aa11.09□□□□□ -0.63
HMGB3-205ENST00000455596 SCGB1C2P0DMR2 95 aa11.09□□□□□ -0.63
HMGB3-205ENST00000455596 LCE2DQ5TA82 110 aaPredicted RBP11.08□□□□□ -0.64
HMGB3-205ENST00000455596 A8MUU9 505 aa11.07□□□□□ -0.64
HMGB3-205ENST00000455596 CCKP06307 115 aa11.06□□□□□ -0.64
HMGB3-205ENST00000455596 DSCR10P59022 87 aa11.06□□□□□ -0.64
HMGB3-205ENST00000455596 IGKV4-1P06312 121 aa11.05□□□□□ -0.64
HMGB3-205ENST00000455596 KRTAP9-6A0A140TA67 174 aa11.03□□□□□ -0.64
HMGB3-205ENST00000455596 M0R2T5 61 aa11.03□□□□□ -0.64
HMGB3-205ENST00000455596 LINC00313P59037 77 aa11.01□□□□□ -0.65
HMGB3-205ENST00000455596 RBM3P98179 157 aaKnown RBP11□□□□□ -0.65
HMGB3-205ENST00000455596 KRTAP10-6P60371 365 aaPredicted RBP10.99□□□□□ -0.65
HMGB3-205ENST00000455596 LINC00472Q9H8W2 130 aa10.99□□□□□ -0.65
HMGB3-205ENST00000455596 LORP23490 312 aaPredicted RBP10.98□□□□□ -0.65
HMGB3-205ENST00000455596 DEFB116Q30KQ4 102 aa10.98□□□□□ -0.65
HMGB3-205ENST00000455596 DSCR8Q96T75 97 aa10.98□□□□□ -0.65
HMGB3-205ENST00000455596 VPS25Q9BRG1 176 aa10.98□□□□□ -0.65
HMGB3-205ENST00000455596 M0R143 59 aa10.97□□□□□ -0.65
HMGB3-205ENST00000455596 BAALC-AS2P0C853 105 aa10.96□□□□□ -0.65
HMGB3-205ENST00000455596 KRTAP16-1A8MUX0 517 aa10.93□□□□□ -0.66
HMGB3-205ENST00000455596 NOTCH2NLQ7Z3S9 236 aa10.91□□□□□ -0.66
HMGB3-205ENST00000455596 TRBV20-1A0A075B6N2 111 aa10.9□□□□□ -0.66
HMGB3-205ENST00000455596 IGHV6-1A0A0B4J1U7 121 aa10.9□□□□□ -0.66
HMGB3-205ENST00000455596 C9JAW5 83 aa10.9□□□□□ -0.66
HMGB3-205ENST00000455596 ATXN8Q156A1 80 aa10.9□□□□□ -0.66
HMGB3-205ENST00000455596 SMIM6P0DI80 62 aa10.89□□□□□ -0.67
HMGB3-205ENST00000455596 C21orf62-AS1Q17RA5 79 aa10.89□□□□□ -0.67
HMGB3-205ENST00000455596 NAA38Q9BRA0 125 aaKnown RBP10.89□□□□□ -0.67
HMGB3-205ENST00000455596 FLGP20930 4061 aaPredicted RBP10.85□□□□□ -0.67
HMGB3-205ENST00000455596 A0A1B0GVX0 72 aa10.84□□□□□ -0.67
HMGB3-205ENST00000455596 C8orf87E5RJ46 101 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms