RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SUPT6HQ7KZ85 1726 aaKnown RBP-0.91□□□□□ -2.55
USP40-209ENST00000452724 ATP5EP2Q5VTU8 51 aa-0.91□□□□□ -2.56
USP40-209ENST00000452724 DEPDC5O75140 1603 aa-0.91□□□□□ -2.56
USP40-209ENST00000452724 ANKRD11Q6UB99 2663 aaPredicted RBP-0.91□□□□□ -2.56
USP40-209ENST00000452724 MAGI3Q5TCQ9 1506 aa-0.91□□□□□ -2.56
USP40-209ENST00000452724 UACAQ9BZF9 1416 aa-0.91□□□□□ -2.56
USP40-209ENST00000452724 AKAP9Q99996 3911 aa-0.91□□□□□ -2.56
USP40-209ENST00000452724 TIAM2Q8IVF5 1701 aa-0.92□□□□□ -2.56
USP40-209ENST00000452724 MTORP42345 2549 aa-0.92□□□□□ -2.56
USP40-209ENST00000452724 VPS13DQ5THJ4 4388 aa-0.92□□□□□ -2.56
USP40-209ENST00000452724 DIP2BQ9P265 1576 aa-0.92□□□□□ -2.56
USP40-209ENST00000452724 MUC17Q685J3 4493 aa-0.92□□□□□ -2.56
USP40-209ENST00000452724 POLR1AO95602 1720 aaPredicted RBP-0.92□□□□□ -2.56
USP40-209ENST00000452724 TMEM131LA2VDJ0 1609 aa-0.93□□□□□ -2.56
USP40-209ENST00000452724 USH2AO75445 5202 aa-0.93□□□□□ -2.56
USP40-209ENST00000452724 NDUFA4O00483 81 aa-0.93□□□□□ -2.56
USP40-209ENST00000452724 DEFB121Q5J5C9 76 aa-0.93□□□□□ -2.56
USP40-209ENST00000452724 PKHD1L1Q86WI1 4243 aa-0.93□□□□□ -2.56
USP40-209ENST00000452724 DMXL1Q9Y485 3027 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 DSPP15924 2871 aaKnown RBP-0.94□□□□□ -2.56
USP40-209ENST00000452724 MAP3K1Q13233 1512 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 DEFB130BP0DP73 79 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 DEFB130AP0DP74 79 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 LTN1O94822 1766 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 RGPD4Q7Z3J3 1758 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 NESP48681 1621 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 HTTP42858 3142 aa-0.94□□□□□ -2.56
USP40-209ENST00000452724 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.94□□□□□ -2.56
USP40-209ENST00000452724 DOT1LQ8TEK3 1739 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 DOPEY1Q5JWR5 2465 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 KIF14Q15058 1648 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 NREPQ16612 68 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 MYO18BQ8IUG5 2567 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 ITPR3Q14573 2671 aa-0.95□□□□□ -2.56
USP40-209ENST00000452724 MAP3K4Q9Y6R4 1608 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 ANK3Q12955 4377 aaKnown RBP-0.96□□□□□ -2.56
USP40-209ENST00000452724 DEFB131BA0A096LNP1 70 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 ZZEF1O43149 2961 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 IAPPP10997 89 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 DEFA5Q01523 94 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 ST20Q9HBF5 79 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 S4R3F8 94 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 LAMA1P25391 3075 aa-0.96□□□□□ -2.56
USP40-209ENST00000452724 RGPD3A6NKT7 1758 aaPredicted RBP-0.96□□□□□ -2.56
USP40-209ENST00000452724 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.97□□□□□ -2.56
USP40-209ENST00000452724 RYR3Q15413 4870 aa-0.97□□□□□ -2.57
USP40-209ENST00000452724 VPS13BQ7Z7G8 4022 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 A0A087WXM4 84 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 MRPL33O75394 65 aaKnown RBP-0.98□□□□□ -2.57
USP40-209ENST00000452724 GNG2P59768 71 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 ADIRFQ15847 76 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 ZNF831Q5JPB2 1677 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 MGAM2Q2M2H8 2515 aa-0.98□□□□□ -2.57
USP40-209ENST00000452724 USP9YO00507 2555 aaPredicted RBP-0.99□□□□□ -2.57
USP40-209ENST00000452724 S100A13Q99584 98 aa-0.99□□□□□ -2.57
USP40-209ENST00000452724 ACACAQ13085 2346 aa-0.99□□□□□ -2.57
USP40-209ENST00000452724 APOBP04114 4563 aaKnown RBP-0.99□□□□□ -2.57
USP40-209ENST00000452724 UTP20O75691 2785 aaKnown RBP-1□□□□□ -2.57
USP40-209ENST00000452724 PKD1L2Q7Z442 2459 aa-1□□□□□ -2.57
USP40-209ENST00000452724 SMIM13P0DJ93 91 aa-1□□□□□ -2.57
USP40-209ENST00000452724 PIK3C2BO00750 1634 aa-1□□□□□ -2.57
USP40-209ENST00000452724 GCN1Q92616 2671 aaKnown RBP-1.01□□□□□ -2.57
USP40-209ENST00000452724 ARFGEF2Q9Y6D5 1785 aa-1.01□□□□□ -2.57
USP40-209ENST00000452724 LRRK2Q5S007 2527 aa-1.02□□□□□ -2.57
USP40-209ENST00000452724 SCN11AQ9UI33 1791 aa-1.02□□□□□ -2.57
USP40-209ENST00000452724 FAM186AA6NE01 2351 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 PPLO60437 1756 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 DEFB106AQ8N104 65 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 KCNQ1DNQ9H478 68 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 NBEAQ8NFP9 2946 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 DNAH11Q96DT5 4516 aa-1.03□□□□□ -2.57
USP40-209ENST00000452724 EPPK1P58107 5090 aaKnown RBP-1.04□□□□□ -2.58
USP40-209ENST00000452724 H3BUT2 72 aa-1.04□□□□□ -2.58
USP40-209ENST00000452724 MT1HP80294 61 aa-1.04□□□□□ -2.58
USP40-209ENST00000452724 DEFB110Q30KQ9 67 aa-1.04□□□□□ -2.58
USP40-209ENST00000452724 HYDINQ4G0P3 5121 aa-1.04□□□□□ -2.58
USP40-209ENST00000452724 THOC2Q8NI27 1593 aaKnown RBP-1.04□□□□□ -2.58
USP40-209ENST00000452724 UBL5Q9BZL1 73 aa-1.05□□□□□ -2.58
USP40-209ENST00000452724 ABCC1P33527 1531 aa-1.05□□□□□ -2.58
USP40-209ENST00000452724 CEP290O15078 2479 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 CRIP1P50238 77 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 BVES-AS1Q5T3Y7 98 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 KDM5DQ9BY66 1539 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 RYR1P21817 5038 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 MED14O60244 1454 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 ARHGAP35Q9NRY4 1499 aa-1.07□□□□□ -2.58
USP40-209ENST00000452724 WT1-ASQ06250 92 aa-1.08□□□□□ -2.58
USP40-209ENST00000452724 RALGAPBQ86X10 1494 aa-1.08□□□□□ -2.58
USP40-209ENST00000452724 HFM1A2PYH4 1435 aa-1.08□□□□□ -2.58
USP40-209ENST00000452724 KALRNO60229 2985 aa-1.08□□□□□ -2.58
USP40-209ENST00000452724 KIAA1109Q2LD37 5005 aa-1.09□□□□□ -2.58
USP40-209ENST00000452724 NBEAL2Q6ZNJ1 2754 aa-1.09□□□□□ -2.58
USP40-209ENST00000452724 C18orf32Q8TCD1 76 aa-1.09□□□□□ -2.58
USP40-209ENST00000452724 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.09□□□□□ -2.58
USP40-209ENST00000452724 DDX60LQ5H9U9 1706 aaKnown RBP-1.09□□□□□ -2.58
USP40-209ENST00000452724 DNAH1Q9P2D7 4330 aa-1.1□□□□□ -2.58
USP40-209ENST00000452724 ACACBO00763 2458 aa-1.1□□□□□ -2.59
USP40-209ENST00000452724 CD163L1Q9NR16 1453 aa-1.1□□□□□ -2.59
USP40-209ENST00000452724 KRTAP19-5Q3LI72 72 aa-1.1□□□□□ -2.59
USP40-209ENST00000452724 BIRC6Q9NR09 4857 aa-1.1□□□□□ -2.59
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms