RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 F8WEM9 126 aa11.11□□□□□ -0.63
SDC1-205ENST00000447124 TCL1BO95988 128 aa11.11□□□□□ -0.63
SDC1-205ENST00000447124 COX8AP10176 69 aa11.11□□□□□ -0.63
SDC1-205ENST00000447124 HIST1H4GQ99525 98 aa11.1□□□□□ -0.63
SDC1-205ENST00000447124 KRTAP9-6A0A140TA67 174 aa11.09□□□□□ -0.63
SDC1-205ENST00000447124 OCIAD2Q56VL3 154 aa11.09□□□□□ -0.63
SDC1-205ENST00000447124 IGFL1Q6UW32 110 aa11.09□□□□□ -0.63
SDC1-205ENST00000447124 RPL37P61927 97 aaKnown RBP11.08□□□□□ -0.64
SDC1-205ENST00000447124 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.08□□□□□ -0.64
SDC1-205ENST00000447124 MT1HP80294 61 aa11.07□□□□□ -0.64
SDC1-205ENST00000447124 Q6JHZ5 121 aa11.07□□□□□ -0.64
SDC1-205ENST00000447124 TRBV7-7A0A0K0K1E9 115 aa11.06□□□□□ -0.64
SDC1-205ENST00000447124 DLEU1O43261 78 aa11.06□□□□□ -0.64
SDC1-205ENST00000447124 LCE2DQ5TA82 110 aaPredicted RBP11.05□□□□□ -0.64
SDC1-205ENST00000447124 CFC1BP0CG36 223 aa11.04□□□□□ -0.64
SDC1-205ENST00000447124 CFC1P0CG37 223 aa11.04□□□□□ -0.64
SDC1-205ENST00000447124 BVES-AS1Q5T3Y7 98 aa11.04□□□□□ -0.64
SDC1-205ENST00000447124 CLEC2BQ92478 149 aa11.04□□□□□ -0.64
SDC1-205ENST00000447124 C14orf144Q96I85 54 aa11.03□□□□□ -0.64
SDC1-205ENST00000447124 PPDPFLQ8WWR9 84 aa11□□□□□ -0.65
SDC1-205ENST00000447124 SNHG12Q9BXW3 62 aa11□□□□□ -0.65
SDC1-205ENST00000447124 H3BUT2 72 aa10.99□□□□□ -0.65
SDC1-205ENST00000447124 HIGD1BQ9P298 99 aa10.97□□□□□ -0.65
SDC1-205ENST00000447124 C2orf91Q6ZV80 131 aa10.96□□□□□ -0.65
SDC1-205ENST00000447124 FAM218AQ96MZ4 157 aa10.96□□□□□ -0.65
SDC1-205ENST00000447124 PAM16Q9Y3D7 125 aa10.96□□□□□ -0.65
SDC1-205ENST00000447124 SPATA45Q537H7 98 aa10.95□□□□□ -0.66
SDC1-205ENST00000447124 RAB37Q96AX2 223 aa10.95□□□□□ -0.66
SDC1-205ENST00000447124 FLGP20930 4061 aaPredicted RBP10.94□□□□□ -0.66
SDC1-205ENST00000447124 A0A0B4J2C4 111 aa10.93□□□□□ -0.66
SDC1-205ENST00000447124 FSIP2Q5CZC0 6907 aa10.93□□□□□ -0.66
SDC1-205ENST00000447124 H0YGX0 51 aa10.92□□□□□ -0.66
SDC1-205ENST00000447124 OBSCN-AS1Q96MR7 158 aa10.91□□□□□ -0.66
SDC1-205ENST00000447124 LST1O00453 97 aa10.9□□□□□ -0.66
SDC1-205ENST00000447124 LORP23490 312 aaPredicted RBP10.88□□□□□ -0.67
SDC1-205ENST00000447124 NDUFV3P56181 108 aaKnown RBP10.88□□□□□ -0.67
SDC1-205ENST00000447124 Q6Q795 121 aa10.88□□□□□ -0.67
SDC1-205ENST00000447124 CEND1Q8N111 149 aa10.88□□□□□ -0.67
SDC1-205ENST00000447124 VAMP8Q9BV40 100 aa10.88□□□□□ -0.67
SDC1-205ENST00000447124 KRTAP10-6P60371 365 aaPredicted RBP10.87□□□□□ -0.67
SDC1-205ENST00000447124 Q75L30 129 aa10.86□□□□□ -0.67
SDC1-205ENST00000447124 SNCGO76070 127 aa10.84□□□□□ -0.67
SDC1-205ENST00000447124 PRO1854Q9UHT4 67 aa10.84□□□□□ -0.67
SDC1-205ENST00000447124 FXYD2P54710 66 aa10.83□□□□□ -0.68
SDC1-205ENST00000447124 TEN1Q86WV5 123 aa10.83□□□□□ -0.68
SDC1-205ENST00000447124 COX6B2Q6YFQ2 88 aa10.82□□□□□ -0.68
SDC1-205ENST00000447124 ATP11AUNQ6ZP68 121 aa10.81□□□□□ -0.68
SDC1-205ENST00000447124 Q96NJ1 140 aa10.81□□□□□ -0.68
SDC1-205ENST00000447124 A0A1B0GX51 115 aa10.8□□□□□ -0.68
SDC1-205ENST00000447124 H3BMG7 143 aa10.8□□□□□ -0.68
SDC1-205ENST00000447124 CRCT1Q9UGL9 99 aa10.8□□□□□ -0.68
SDC1-205ENST00000447124 A0A087WSZ3 146 aa10.79□□□□□ -0.68
SDC1-205ENST00000447124 FABP2P12104 132 aa10.79□□□□□ -0.68
SDC1-205ENST00000447124 SS18L2Q9UHA2 77 aa10.79□□□□□ -0.68
SDC1-205ENST00000447124 M0R2T5 61 aa10.78□□□□□ -0.68
SDC1-205ENST00000447124 TRIAP1O43715 76 aa10.78□□□□□ -0.68
SDC1-205ENST00000447124 A0A1W2PNM2 257 aa10.77□□□□□ -0.69
SDC1-205ENST00000447124 TMEM238LA0A1B0GVL6 79 aa10.76□□□□□ -0.69
SDC1-205ENST00000447124 A6NJY4 79 aa10.76□□□□□ -0.69
SDC1-205ENST00000447124 C20orf166-AS1Q96NR2 134 aa10.74□□□□□ -0.69
SDC1-205ENST00000447124 A8MUU9 505 aa10.73□□□□□ -0.69
SDC1-205ENST00000447124 PYY3Q5JQD4 70 aa10.73□□□□□ -0.69
SDC1-205ENST00000447124 GHRHP01286 108 aa10.72□□□□□ -0.69
SDC1-205ENST00000447124 K7ERJ3 54 aa10.69□□□□□ -0.7
SDC1-205ENST00000447124 DSCR10P59022 87 aa10.69□□□□□ -0.7
SDC1-205ENST00000447124 HSD52Q0P140 79 aa10.68□□□□□ -0.7
SDC1-205ENST00000447124 ANKRD29Q8N6D5 301 aa10.66□□□□□ -0.7
SDC1-205ENST00000447124 A0A1B0GV72 72 aa10.65□□□□□ -0.7
SDC1-205ENST00000447124 PSMB2P49721 201 aa10.65□□□□□ -0.7
SDC1-205ENST00000447124 ORMDL1Q9P0S3 153 aa10.65□□□□□ -0.7
SDC1-205ENST00000447124 TRBV7-4A0A0J9YYF1 115 aa10.62□□□□□ -0.71
SDC1-205ENST00000447124 DNAL4O96015 105 aa10.62□□□□□ -0.71
SDC1-205ENST00000447124 KRTAP16-1A8MUX0 517 aa10.61□□□□□ -0.71
SDC1-205ENST00000447124 SIGMAR1Q99720 223 aa10.61□□□□□ -0.71
SDC1-205ENST00000447124 H3BQ85 93 aa10.6□□□□□ -0.71
SDC1-205ENST00000447124 TMEM256-PLSCR3K7ERE1 68 aa10.6□□□□□ -0.71
SDC1-205ENST00000447124 IGKV4-1P06312 121 aa10.6□□□□□ -0.71
SDC1-205ENST00000447124 NOTCH2NLQ7Z3S9 236 aa10.6□□□□□ -0.71
SDC1-205ENST00000447124 LINC00313P59037 77 aa10.59□□□□□ -0.71
SDC1-205ENST00000447124 COX6CP09669 75 aa10.58□□□□□ -0.72
SDC1-205ENST00000447124 DEFB116Q30KQ4 102 aa10.58□□□□□ -0.72
SDC1-205ENST00000447124 LINC00472Q9H8W2 130 aa10.58□□□□□ -0.72
SDC1-205ENST00000447124 UQCR10Q9UDW1 63 aa10.56□□□□□ -0.72
SDC1-205ENST00000447124 CCKP06307 115 aa10.55□□□□□ -0.72
SDC1-205ENST00000447124 UBE2V1Q13404 147 aa10.55□□□□□ -0.72
SDC1-205ENST00000447124 TRBV20-1A0A075B6N2 111 aa10.51□□□□□ -0.73
SDC1-205ENST00000447124 TRACP01848 142 aa10.51□□□□□ -0.73
SDC1-205ENST00000447124 TMA7Q9Y2S6 64 aaKnown RBP10.5□□□□□ -0.73
SDC1-205ENST00000447124 KRTAP9-8Q9BYQ0 159 aa10.49□□□□□ -0.73
SDC1-205ENST00000447124 SCGB1C2P0DMR2 95 aa10.48□□□□□ -0.73
SDC1-205ENST00000447124 IGHV6-1A0A0B4J1U7 121 aa10.46□□□□□ -0.73
SDC1-205ENST00000447124 RBM3P98179 157 aaKnown RBP10.45□□□□□ -0.74
SDC1-205ENST00000447124 VPS25Q9BRG1 176 aa10.44□□□□□ -0.74
SDC1-205ENST00000447124 USH2AO75445 5202 aa10.43□□□□□ -0.74
SDC1-205ENST00000447124 BAALC-AS2P0C853 105 aa10.42□□□□□ -0.74
SDC1-205ENST00000447124 HRES1P13985 223 aa10.42□□□□□ -0.74
SDC1-205ENST00000447124 MPLKIPQ8TAP9 179 aa10.42□□□□□ -0.74
SDC1-205ENST00000447124 DSCR8Q96T75 97 aa10.4□□□□□ -0.74
SDC1-205ENST00000447124 A0A1B0GVX0 72 aa10.39□□□□□ -0.75
SDC1-205ENST00000447124 C8orf87E5RJ46 101 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms