RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 UBE2V1Q13404 147 aa12.38□□□□□ -0.43
CHD3-204ENST00000439235 FAM229BQ4G0N7 80 aa12.38□□□□□ -0.43
CHD3-204ENST00000439235 MTURNQ8N3F0 131 aa12.38□□□□□ -0.43
CHD3-204ENST00000439235 LAMTOR3Q9UHA4 124 aa12.38□□□□□ -0.43
CHD3-204ENST00000439235 KRTAP1-4P0C5Y4 121 aa12.37□□□□□ -0.43
CHD3-204ENST00000439235 F8WEM9 126 aa12.35□□□□□ -0.43
CHD3-204ENST00000439235 SMIM29Q86T20 159 aa12.35□□□□□ -0.43
CHD3-204ENST00000439235 ANKRD29Q8N6D5 301 aa12.35□□□□□ -0.43
CHD3-204ENST00000439235 ANAPC11Q9NYG5 84 aa12.35□□□□□ -0.43
CHD3-204ENST00000439235 PRO0461Q9UI25 63 aa12.35□□□□□ -0.43
CHD3-204ENST00000439235 NDUFV3P56181 108 aaKnown RBP12.34□□□□□ -0.43
CHD3-204ENST00000439235 C3orf22Q8N5N4 141 aa12.34□□□□□ -0.43
CHD3-204ENST00000439235 F8W1H4 67 aa12.33□□□□□ -0.44
CHD3-204ENST00000439235 CRYGAP11844 174 aa12.32□□□□□ -0.44
CHD3-204ENST00000439235 LINC01600Q96MT4 127 aa12.32□□□□□ -0.44
CHD3-204ENST00000439235 IGLV9-49A0A0B4J1Y8 123 aa12.3□□□□□ -0.44
CHD3-204ENST00000439235 SMCPP49901 116 aaPredicted RBP12.3□□□□□ -0.44
CHD3-204ENST00000439235 HERC1Q15751 4861 aa12.3□□□□□ -0.44
CHD3-204ENST00000439235 PKHD1L1Q86WI1 4243 aa12.28□□□□□ -0.44
CHD3-204ENST00000439235 C9orf153Q5TBE3 101 aa12.28□□□□□ -0.44
CHD3-204ENST00000439235 A0A087X002 238 aa12.27□□□□□ -0.45
CHD3-204ENST00000439235 Q8NBF4 154 aa12.27□□□□□ -0.45
CHD3-204ENST00000439235 JMJD7-PLA2G4BH0Y9G9 81 aa12.26□□□□□ -0.45
CHD3-204ENST00000439235 MOBPQ13875 183 aa12.26□□□□□ -0.45
CHD3-204ENST00000439235 IGLV8-61A0A075B6I0 122 aa12.24□□□□□ -0.45
CHD3-204ENST00000439235 KRTAP13-2Q52LG2 175 aa12.24□□□□□ -0.45
CHD3-204ENST00000439235 SRRM2Q9UQ35 2752 aaKnown RBP12.24□□□□□ -0.45
CHD3-204ENST00000439235 A0A1B0GV72 72 aa12.23□□□□□ -0.45
CHD3-204ENST00000439235 PRR26Q8N8Z3 221 aa12.23□□□□□ -0.45
CHD3-204ENST00000439235 RBM3P98179 157 aaKnown RBP12.22□□□□□ -0.45
CHD3-204ENST00000439235 Q6JHZ5 121 aa12.22□□□□□ -0.45
CHD3-204ENST00000439235 SSBP3-AS1Q7Z2R9 100 aa12.21□□□□□ -0.45
CHD3-204ENST00000439235 TYMSOSQ8TAI1 123 aa12.21□□□□□ -0.45
CHD3-204ENST00000439235 OBSCN-AS1Q96MR7 158 aa12.2□□□□□ -0.46
CHD3-204ENST00000439235 TEN1Q86WV5 123 aa12.19□□□□□ -0.46
CHD3-204ENST00000439235 DSCR8Q96T75 97 aa12.19□□□□□ -0.46
CHD3-204ENST00000439235 OXTP01178 125 aa12.16□□□□□ -0.46
CHD3-204ENST00000439235 ETDBQ3ZM63 59 aa12.16□□□□□ -0.46
CHD3-204ENST00000439235 TRBV7-4A0A0J9YYF1 115 aa12.15□□□□□ -0.46
CHD3-204ENST00000439235 IGFL1Q6UW32 110 aa12.15□□□□□ -0.46
CHD3-204ENST00000439235 C14orf132Q9NPU4 83 aa12.14□□□□□ -0.47
CHD3-204ENST00000439235 PDE6GP18545 87 aa12.13□□□□□ -0.47
CHD3-204ENST00000439235 LOC110117498A0A087WWA1 95 aa12.12□□□□□ -0.47
CHD3-204ENST00000439235 C21orf62-AS1Q17RA5 79 aa12.12□□□□□ -0.47
CHD3-204ENST00000439235 KRTAP10-8P60410 259 aa12.1□□□□□ -0.47
CHD3-204ENST00000439235 A0A0G2JQZ4 141 aa12.08□□□□□ -0.48
CHD3-204ENST00000439235 KRTAP29-1A8MX34 341 aaPredicted RBP12.08□□□□□ -0.48
CHD3-204ENST00000439235 Q6ZQT0 140 aa12.08□□□□□ -0.48
CHD3-204ENST00000439235 LINC00304Q8N9R0 145 aa12.08□□□□□ -0.48
CHD3-204ENST00000439235 CD164Q04900 197 aa12.07□□□□□ -0.48
CHD3-204ENST00000439235 C4orf48Q5BLP8 95 aa12.07□□□□□ -0.48
CHD3-204ENST00000439235 DMBT1Q9UGM3 2413 aaPredicted RBP12.06□□□□□ -0.48
CHD3-204ENST00000439235 CCKP06307 115 aa12.06□□□□□ -0.48
CHD3-204ENST00000439235 SPAG11AQ6PDA7 123 aa12.05□□□□□ -0.48
CHD3-204ENST00000439235 Q6Q795 121 aa12.05□□□□□ -0.48
CHD3-204ENST00000439235 VPS25Q9BRG1 176 aa12.05□□□□□ -0.48
CHD3-204ENST00000439235 A0A1W2PNM2 257 aa12.04□□□□□ -0.48
CHD3-204ENST00000439235 MT1HL1P0DM35 61 aa12.03□□□□□ -0.48
CHD3-204ENST00000439235 HRCT1Q6UXD1 115 aa12.03□□□□□ -0.48
CHD3-204ENST00000439235 FLG2Q5D862 2391 aaPredicted RBP12□□□□□ -0.49
CHD3-204ENST00000439235 TRBV7-7A0A0K0K1E9 115 aa12□□□□□ -0.49
CHD3-204ENST00000439235 SPINK1P00995 79 aa12□□□□□ -0.49
CHD3-204ENST00000439235 FAT3Q8TDW7 4589 aa11.99□□□□□ -0.49
CHD3-204ENST00000439235 A0A1B0GW54 56 aa11.98□□□□□ -0.49
CHD3-204ENST00000439235 J3QL48 77 aa11.96□□□□□ -0.49
CHD3-204ENST00000439235 RPS29P62273 56 aaKnown RBP11.96□□□□□ -0.49
CHD3-204ENST00000439235 LIMD2Q9BT23 127 aa11.96□□□□□ -0.49
CHD3-204ENST00000439235 LRP1Q07954 4544 aaKnown RBP11.94□□□□□ -0.5
CHD3-204ENST00000439235 A0A087WSZ3 146 aa11.94□□□□□ -0.5
CHD3-204ENST00000439235 SS18L2Q9UHA2 77 aa11.94□□□□□ -0.5
CHD3-204ENST00000439235 J3QR89 54 aa11.91□□□□□ -0.5
CHD3-204ENST00000439235 Q5XG85 94 aa11.9□□□□□ -0.5
CHD3-204ENST00000439235 MYCBP2O75592 4640 aa11.9□□□□□ -0.5
CHD3-204ENST00000439235 FAM240AA0A1B0GVK7 77 aa11.87□□□□□ -0.51
CHD3-204ENST00000439235 ACYP1P07311 99 aa11.87□□□□□ -0.51
CHD3-204ENST00000439235 TNXBP22105 4242 aa11.86□□□□□ -0.51
CHD3-204ENST00000439235 ASB16-AS1Q495Z4 193 aa11.84□□□□□ -0.51
CHD3-204ENST00000439235 NREPQ16612 68 aa11.81□□□□□ -0.52
CHD3-204ENST00000439235 LINC00846Q9NV44 126 aa11.81□□□□□ -0.52
CHD3-204ENST00000439235 UBR4Q5T4S7 5183 aa11.81□□□□□ -0.52
CHD3-204ENST00000439235 K7ERU9 68 aa11.8□□□□□ -0.52
CHD3-204ENST00000439235 UBL5Q9BZL1 73 aa11.8□□□□□ -0.52
CHD3-204ENST00000439235 Q6ZVQ6 151 aa11.76□□□□□ -0.53
CHD3-204ENST00000439235 C1orf195Q5TG92 126 aa11.74□□□□□ -0.53
CHD3-204ENST00000439235 LINC00472Q9H8W2 130 aa11.73□□□□□ -0.53
CHD3-204ENST00000439235 Q96NJ1 140 aa11.72□□□□□ -0.53
CHD3-204ENST00000439235 J3KT08 172 aa11.7□□□□□ -0.54
CHD3-204ENST00000439235 RETNLBQ9BQ08 111 aa11.7□□□□□ -0.54
CHD3-204ENST00000439235 IGKV4-1P06312 121 aa11.68□□□□□ -0.54
CHD3-204ENST00000439235 DEFB116Q30KQ4 102 aa11.67□□□□□ -0.54
CHD3-204ENST00000439235 FP248Q71RG6 208 aaPredicted RBP11.67□□□□□ -0.54
CHD3-204ENST00000439235 SIGMAR1Q99720 223 aa11.67□□□□□ -0.54
CHD3-204ENST00000439235 BPY2O14599 106 aa11.66□□□□□ -0.54
CHD3-204ENST00000439235 ATP5EP2Q5VTU8 51 aa11.61□□□□□ -0.55
CHD3-204ENST00000439235 LINC00643Q86TS7 51 aa11.61□□□□□ -0.55
CHD3-204ENST00000439235 PRR4Q16378 134 aa11.6□□□□□ -0.55
CHD3-204ENST00000439235 CXCL6P80162 114 aa11.59□□□□□ -0.55
CHD3-204ENST00000439235 CDIP1Q9H305 208 aa11.59□□□□□ -0.55
CHD3-204ENST00000439235 A8MWP4 228 aa11.58□□□□□ -0.56
CHD3-204ENST00000439235 NDUFB1O75438 58 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms