RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KRTAP25-1Q3LHN0 102 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 FAM229AH3BQW9 127 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 APCP25054 2843 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 CFAP54Q96N23 3096 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 SPATA8Q6RVD6 105 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 TRIOO75962 3097 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 ITPR2Q14571 2701 aa2.15□□□□□ -2.07
SYNE1-212ENST00000423061 CASC10Q5T4H9 136 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 K7EIL1 84 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 CHTF8P0CG12 524 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 C8orf17Q9NRJ1 99 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 A0A0D9SG42 100 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 NSD1Q96L73 2696 aaPredicted RBP2.14□□□□□ -2.07
SYNE1-212ENST00000423061 MGAQ8IWI9 3026 aa2.14□□□□□ -2.07
SYNE1-212ENST00000423061 PRR34Q9NV39 138 aa2.13□□□□□ -2.07
SYNE1-212ENST00000423061 C15orf56Q8N910 161 aa2.13□□□□□ -2.07
SYNE1-212ENST00000423061 TACC2O95359 2948 aa2.13□□□□□ -2.07
SYNE1-212ENST00000423061 GIG44P09565 113 aaPredicted RBP2.13□□□□□ -2.07
SYNE1-212ENST00000423061 ZNF861PO60384 105 aa2.13□□□□□ -2.07
SYNE1-212ENST00000423061 LRBAP50851 2863 aa2.13□□□□□ -2.07
SYNE1-212ENST00000423061 A0A1B0GVX0 72 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 TLX1NBP0CAT3 122 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 C19orf73Q9NVV2 129 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 FRYQ5TBA9 3013 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 IGLV5-48A0A075B6I7 105 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 KRTAP29-1A8MX34 341 aaPredicted RBP2.12□□□□□ -2.07
SYNE1-212ENST00000423061 ZANQ9Y493 2812 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 Q8N1X5 172 aa2.12□□□□□ -2.07
SYNE1-212ENST00000423061 LAMA3Q16787 3333 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 MRPL34Q9BQ48 92 aaKnown RBP2.11□□□□□ -2.07
SYNE1-212ENST00000423061 KRTAP10-9P60411 292 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 SPACA4Q8TDM5 124 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 PLAC8Q9NZF1 115 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 A8MUU9 505 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 KALRNO60229 2985 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 DMAC1Q96GE9 116 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 HTTP42858 3142 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 IGLV7-43P04211 117 aa2.11□□□□□ -2.07
SYNE1-212ENST00000423061 PLA2G2DQ9UNK4 145 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 KRTAP23-1A1A580 65 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 ANAPC11Q9NYG5 84 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 BRCA2P51587 3418 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 LY6G6CO95867 125 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 CSNK1G2-AS1Q8NCQ2 148 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 FRYLO94915 3013 aa2.1□□□□□ -2.07
SYNE1-212ENST00000423061 UNC80Q8N2C7 3258 aa2.09□□□□□ -2.08
SYNE1-212ENST00000423061 LINC00483Q53H64 154 aa2.09□□□□□ -2.08
SYNE1-212ENST00000423061 A0A1B0GU33 70 aa2.09□□□□□ -2.08
SYNE1-212ENST00000423061 APLNQ9ULZ1 77 aa2.09□□□□□ -2.08
SYNE1-212ENST00000423061 ZZEF1O43149 2961 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 FREM2Q5SZK8 3169 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 NBDYA0A0U1RRE5 68 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 P0C880 135 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 C20orf166-AS1Q96NR2 134 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 SPRR4Q96PI1 79 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 SMR3AQ99954 134 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 VPS13AQ96RL7 3174 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 HRNRQ86YZ3 2850 aaPredicted RBP2.08□□□□□ -2.08
SYNE1-212ENST00000423061 Q5W150 140 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 C5orf42Q9H799 3197 aa2.08□□□□□ -2.08
SYNE1-212ENST00000423061 MMP24-AS1A0A0U1RRL7 71 aa2.07□□□□□ -2.08
SYNE1-212ENST00000423061 HIVEP1P15822 2718 aa2.07□□□□□ -2.08
SYNE1-212ENST00000423061 LINC00472Q9H8W2 130 aa2.07□□□□□ -2.08
SYNE1-212ENST00000423061 MKI67P46013 3256 aaKnown RBP2.07□□□□□ -2.08
SYNE1-212ENST00000423061 NF1P21359 2839 aa2.07□□□□□ -2.08
SYNE1-212ENST00000423061 LINC00304Q8N9R0 145 aa2.06□□□□□ -2.08
SYNE1-212ENST00000423061 WDFY4Q6ZS81 3184 aa2.06□□□□□ -2.08
SYNE1-212ENST00000423061 PSORS1C2Q9UIG4 136 aa2.06□□□□□ -2.08
SYNE1-212ENST00000423061 KRTAP11-1Q8IUC1 163 aa2.05□□□□□ -2.08
SYNE1-212ENST00000423061 CRYBG3Q68DQ2 2970 aa2.05□□□□□ -2.08
SYNE1-212ENST00000423061 ASH1LQ9NR48 2969 aaKnown RBP2.05□□□□□ -2.08
SYNE1-212ENST00000423061 Q96NJ1 140 aa2.04□□□□□ -2.08
SYNE1-212ENST00000423061 XIRP2A4UGR9 3374 aa2.04□□□□□ -2.08
SYNE1-212ENST00000423061 TYMSOSQ8TAI1 123 aa2.04□□□□□ -2.08
SYNE1-212ENST00000423061 KRTAP26-1Q6PEX3 210 aa2.04□□□□□ -2.08
SYNE1-212ENST00000423061 KRTAP4-16G5E9R7 235 aaPredicted RBP2.03□□□□□ -2.08
SYNE1-212ENST00000423061 C10orf95Q9H7T3 257 aa2.03□□□□□ -2.08
SYNE1-212ENST00000423061 CELSR2Q9HCU4 2923 aa2.03□□□□□ -2.08
SYNE1-212ENST00000423061 PANO1I0J062 215 aa2.03□□□□□ -2.09
SYNE1-212ENST00000423061 PRUNE2Q8WUY3 3088 aa2.03□□□□□ -2.09
SYNE1-212ENST00000423061 A0A087WTM6 91 aa2.02□□□□□ -2.09
SYNE1-212ENST00000423061 H1FX-AS1Q4G0G2 97 aa2.02□□□□□ -2.09
SYNE1-212ENST00000423061 CDH23Q9H251 3354 aa2.01□□□□□ -2.09
SYNE1-212ENST00000423061 VCANP13611 3396 aa2.01□□□□□ -2.09
SYNE1-212ENST00000423061 SPRR1AP35321 89 aa2.01□□□□□ -2.09
SYNE1-212ENST00000423061 KRTAP24-1Q3LI83 254 aa2□□□□□ -2.09
SYNE1-212ENST00000423061 TENM1Q9UKZ4 2725 aa2□□□□□ -2.09
SYNE1-212ENST00000423061 DCHS2Q6V1P9 2916 aa2□□□□□ -2.09
SYNE1-212ENST00000423061 MXRA5Q9NR99 2828 aa1.99□□□□□ -2.09
SYNE1-212ENST00000423061 C9orf92A6NGG3 77 aa1.99□□□□□ -2.09
SYNE1-212ENST00000423061 LAMA1P25391 3075 aa1.99□□□□□ -2.09
SYNE1-212ENST00000423061 KRTAP10-11P60412 298 aa1.99□□□□□ -2.09
SYNE1-212ENST00000423061 SPRR1BP22528 89 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 ADGRG4Q8IZF6 3080 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 KRTAP1-1Q07627 177 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 COX6B2Q6YFQ2 88 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 ATMQ13315 3056 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 FBN2P35556 2912 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 Q6ZSA8 131 aa1.98□□□□□ -2.09
SYNE1-212ENST00000423061 REV3LO60673 3130 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms