RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 REG3GQ6UW15 175 aa6.74□□□□□ -1.33
USP54-204ENST00000422491 LINC00588Q9Y4M8 146 aa6.74□□□□□ -1.33
USP54-204ENST00000422491 FLNBO75369 2602 aaKnown RBP6.74□□□□□ -1.33
USP54-204ENST00000422491 TENM1Q9UKZ4 2725 aa6.74□□□□□ -1.33
USP54-204ENST00000422491 C9orf163Q8N9P6 203 aa6.74□□□□□ -1.33
USP54-204ENST00000422491 SMR3AQ99954 134 aa6.74□□□□□ -1.33
USP54-204ENST00000422491 DNAH10OSP0CZ25 163 aa6.73□□□□□ -1.33
USP54-204ENST00000422491 CASC10Q5T4H9 136 aa6.73□□□□□ -1.33
USP54-204ENST00000422491 CASC2Q6XLA1 102 aa6.73□□□□□ -1.33
USP54-204ENST00000422491 PRR15LQ9BU68 103 aa6.73□□□□□ -1.33
USP54-204ENST00000422491 CNBPP62633 177 aaKnown RBP6.72□□□□□ -1.33
USP54-204ENST00000422491 DNAH1Q9P2D7 4330 aa6.72□□□□□ -1.33
USP54-204ENST00000422491 F8P00451 2351 aa6.7□□□□□ -1.34
USP54-204ENST00000422491 LCA10Q71F78 164 aa6.7□□□□□ -1.34
USP54-204ENST00000422491 Q75L30 129 aa6.7□□□□□ -1.34
USP54-204ENST00000422491 KTN1-AS1Q86SY8 53 aa6.7□□□□□ -1.34
USP54-204ENST00000422491 LOC101927531A0A1B0GV80 90 aa6.7□□□□□ -1.34
USP54-204ENST00000422491 PRLHP81277 87 aa6.69□□□□□ -1.34
USP54-204ENST00000422491 DEFB131BA0A096LNP1 70 aa6.68□□□□□ -1.34
USP54-204ENST00000422491 A8MWP4 228 aa6.68□□□□□ -1.34
USP54-204ENST00000422491 ATP11AUNQ6ZP68 121 aa6.68□□□□□ -1.34
USP54-204ENST00000422491 COA5Q86WW8 74 aa6.68□□□□□ -1.34
USP54-204ENST00000422491 LINC00472Q9H8W2 130 aa6.67□□□□□ -1.34
USP54-204ENST00000422491 OTOGQ6ZRI0 2925 aa6.67□□□□□ -1.34
USP54-204ENST00000422491 IGLV7-46A0A075B6I9 117 aa6.66□□□□□ -1.34
USP54-204ENST00000422491 SPTSSBQ8NFR3 76 aa6.66□□□□□ -1.34
USP54-204ENST00000422491 TEP1Q99973 2627 aaKnown RBP6.66□□□□□ -1.34
USP54-204ENST00000422491 TENM3Q9P273 2699 aa6.66□□□□□ -1.34
USP54-204ENST00000422491 ANK2Q01484 3957 aa6.65□□□□□ -1.34
USP54-204ENST00000422491 A6NED7 52 aa6.65□□□□□ -1.35
USP54-204ENST00000422491 A6NN06 94 aa6.65□□□□□ -1.35
USP54-204ENST00000422491 RBM12B-AS1Q9P1G2 102 aa6.63□□□□□ -1.35
USP54-204ENST00000422491 MMP24-AS1A0A0U1RRL7 71 aa6.63□□□□□ -1.35
USP54-204ENST00000422491 ATRQ13535 2644 aa6.63□□□□□ -1.35
USP54-204ENST00000422491 PHF5AQ7RTV0 110 aaKnown RBP6.63□□□□□ -1.35
USP54-204ENST00000422491 C11orf45Q8TAV5 145 aa6.63□□□□□ -1.35
USP54-204ENST00000422491 CDC42SE1Q9NRR8 79 aa6.63□□□□□ -1.35
USP54-204ENST00000422491 SPRR1BP22528 89 aa6.62□□□□□ -1.35
USP54-204ENST00000422491 PLAC8Q9NZF1 115 aa6.62□□□□□ -1.35
USP54-204ENST00000422491 BAHCC1Q9P281 2608 aa6.61□□□□□ -1.35
USP54-204ENST00000422491 A0A096LNI7 61 aa6.61□□□□□ -1.35
USP54-204ENST00000422491 KRTAP10-11P60412 298 aa6.61□□□□□ -1.35
USP54-204ENST00000422491 NDUFS5O43920 106 aa6.61□□□□□ -1.35
USP54-204ENST00000422491 OXLD1Q5BKU9 147 aa6.6□□□□□ -1.35
USP54-204ENST00000422491 LINC01558Q9Y6Z2 57 aa6.6□□□□□ -1.35
USP54-204ENST00000422491 H0Y9J4 135 aa6.59□□□□□ -1.35
USP54-204ENST00000422491 IGKV2-24A0A0C4DH68 120 aa6.58□□□□□ -1.36
USP54-204ENST00000422491 PCOTHQ58A44 107 aa6.58□□□□□ -1.36
USP54-204ENST00000422491 INAFM1C9JVW0 142 aa6.58□□□□□ -1.36
USP54-204ENST00000422491 ASB16-AS1Q495Z4 193 aa6.58□□□□□ -1.36
USP54-204ENST00000422491 KRTAP11-1Q8IUC1 163 aa6.58□□□□□ -1.36
USP54-204ENST00000422491 SRRM2Q9UQ35 2752 aaKnown RBP6.58□□□□□ -1.36
USP54-204ENST00000422491 SPAG11AQ6PDA7 123 aa6.57□□□□□ -1.36
USP54-204ENST00000422491 NSD1Q96L73 2696 aaPredicted RBP6.57□□□□□ -1.36
USP54-204ENST00000422491 MOBPQ13875 183 aa6.56□□□□□ -1.36
USP54-204ENST00000422491 Q6ZR54 194 aa6.55□□□□□ -1.36
USP54-204ENST00000422491 TP53AIP1Q9HCN2 124 aa6.55□□□□□ -1.36
USP54-204ENST00000422491 DNAH10Q8IVF4 4471 aa6.55□□□□□ -1.36
USP54-204ENST00000422491 TENM2Q9NT68 2774 aa6.54□□□□□ -1.36
USP54-204ENST00000422491 Q96NJ1 140 aa6.54□□□□□ -1.36
USP54-204ENST00000422491 C7orf65Q6ZTY9 151 aa6.54□□□□□ -1.36
USP54-204ENST00000422491 SPINK7P58062 85 aa6.53□□□□□ -1.36
USP54-204ENST00000422491 HRES1P13985 223 aa6.52□□□□□ -1.37
USP54-204ENST00000422491 CSMD3Q7Z407 3707 aa6.51□□□□□ -1.37
USP54-204ENST00000422491 C8orf17Q9NRJ1 99 aa6.5□□□□□ -1.37
USP54-204ENST00000422491 CHTF8P0CG12 524 aa6.5□□□□□ -1.37
USP54-204ENST00000422491 LYSTQ99698 3801 aa6.49□□□□□ -1.37
USP54-204ENST00000422491 CMYA5Q8N3K9 4069 aa6.49□□□□□ -1.37
USP54-204ENST00000422491 KRTAP1-5Q9BYS1 174 aa6.48□□□□□ -1.37
USP54-204ENST00000422491 DNAH3Q8TD57 4116 aa6.47□□□□□ -1.37
USP54-204ENST00000422491 MAST4O15021 2626 aa6.47□□□□□ -1.37
USP54-204ENST00000422491 KRTAP13-1Q8IUC0 172 aa6.46□□□□□ -1.37
USP54-204ENST00000422491 DNAH9Q9NYC9 4486 aa6.46□□□□□ -1.38
USP54-204ENST00000422491 A0A1B0GVX0 72 aa6.45□□□□□ -1.38
USP54-204ENST00000422491 IGHV6-1A0A0B4J1U7 121 aa6.44□□□□□ -1.38
USP54-204ENST00000422491 MRPL34Q9BQ48 92 aaKnown RBP6.44□□□□□ -1.38
USP54-204ENST00000422491 FBN1P35555 2871 aaKnown RBP6.44□□□□□ -1.38
USP54-204ENST00000422491 IGLV9-49A0A0B4J1Y8 123 aa6.42□□□□□ -1.38
USP54-204ENST00000422491 HUWE1Q7Z6Z7 4374 aaKnown RBP6.42□□□□□ -1.38
USP54-204ENST00000422491 PRR26Q8N8Z3 221 aa6.42□□□□□ -1.38
USP54-204ENST00000422491 A0A087X002 238 aa6.41□□□□□ -1.38
USP54-204ENST00000422491 NOTCH2NLQ7Z3S9 236 aa6.41□□□□□ -1.38
USP54-204ENST00000422491 K7EIL1 84 aa6.4□□□□□ -1.39
USP54-204ENST00000422491 C14orf177Q52M58 125 aa6.39□□□□□ -1.39
USP54-204ENST00000422491 ALMS1Q8TCU4 4167 aa6.39□□□□□ -1.39
USP54-204ENST00000422491 PANO1I0J062 215 aa6.39□□□□□ -1.39
USP54-204ENST00000422491 LINC00313P59037 77 aa6.39□□□□□ -1.39
USP54-204ENST00000422491 LINC00483Q53H64 154 aa6.39□□□□□ -1.39
USP54-204ENST00000422491 KRTAP13-3Q3SY46 172 aa6.38□□□□□ -1.39
USP54-204ENST00000422491 MDFIQ99750 246 aa6.38□□□□□ -1.39
USP54-204ENST00000422491 COL7A1Q02388 2944 aa6.37□□□□□ -1.39
USP54-204ENST00000422491 CDK2AP2O75956 126 aa6.37□□□□□ -1.39
USP54-204ENST00000422491 Q5W150 140 aa6.37□□□□□ -1.39
USP54-204ENST00000422491 NOTCH1P46531 2555 aa6.35□□□□□ -1.39
USP54-204ENST00000422491 C8orf87E5RJ46 101 aa6.35□□□□□ -1.39
USP54-204ENST00000422491 PRAC1Q96KF2 57 aa6.35□□□□□ -1.39
USP54-204ENST00000422491 WWC2-AS2Q96NR7 200 aa6.35□□□□□ -1.39
USP54-204ENST00000422491 ACYP2P14621 99 aa6.34□□□□□ -1.4
USP54-204ENST00000422491 NBEAL1Q6ZS30 2694 aa6.32□□□□□ -1.4
USP54-204ENST00000422491 PLA2G1BP04054 148 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms