RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-205ENST00000409952 HMGN3Q15651 99 aa1.66□□□□□ -2.14
LSM5-205ENST00000409952 PROK2Q9HC23 129 aa1.66□□□□□ -2.14
LSM5-205ENST00000409952 LINC00846Q9NV44 126 aa1.66□□□□□ -2.14
LSM5-205ENST00000409952 ABCA1O95477 2261 aa1.65□□□□□ -2.14
LSM5-205ENST00000409952 F8WEM9 126 aa1.65□□□□□ -2.15
LSM5-205ENST00000409952 SPINK9Q5DT21 86 aa1.65□□□□□ -2.15
LSM5-205ENST00000409952 DEFB124Q8NES8 71 aa1.65□□□□□ -2.15
LSM5-205ENST00000409952 TMEM263Q8WUH6 116 aaKnown RBP1.65□□□□□ -2.15
LSM5-205ENST00000409952 SPCS1Q9Y6A9 102 aa1.65□□□□□ -2.15
LSM5-205ENST00000409952 ZNF236Q9UL36 1845 aa1.65□□□□□ -2.15
LSM5-205ENST00000409952 MAP1AP78559 2803 aaPredicted RBP1.64□□□□□ -2.15
LSM5-205ENST00000409952 CUBNO60494 3623 aa1.64□□□□□ -2.15
LSM5-205ENST00000409952 ARMS2P0C7Q2 107 aa1.64□□□□□ -2.15
LSM5-205ENST00000409952 KRTAP10-4P60372 401 aaPredicted RBP1.64□□□□□ -2.15
LSM5-205ENST00000409952 SNRPFP62306 86 aaKnown RBP1.64□□□□□ -2.15
LSM5-205ENST00000409952 PSENENQ9NZ42 101 aa1.64□□□□□ -2.15
LSM5-205ENST00000409952 TACC2O95359 2948 aa1.64□□□□□ -2.15
LSM5-205ENST00000409952 MYO7AQ13402 2215 aa1.63□□□□□ -2.15
LSM5-205ENST00000409952 ADIRFQ15847 76 aa1.63□□□□□ -2.15
LSM5-205ENST00000409952 NMSQ5H8A3 153 aa1.63□□□□□ -2.15
LSM5-205ENST00000409952 PLXNB2O15031 1838 aa1.63□□□□□ -2.15
LSM5-205ENST00000409952 GOLGA4Q13439 2230 aaKnown RBP1.62□□□□□ -2.15
LSM5-205ENST00000409952 AKAP9Q99996 3911 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 A0A087WVE0 104 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 HMGN2P05204 90 aaKnown RBP1.62□□□□□ -2.15
LSM5-205ENST00000409952 Q6JHZ5 121 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 LINC01600Q96MT4 127 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 ST20Q9HBF5 79 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 RYR2Q92736 4967 aa1.62□□□□□ -2.15
LSM5-205ENST00000409952 WFDC2Q14508 124 aa1.61□□□□□ -2.15
LSM5-205ENST00000409952 ALKAL2Q6UX46 152 aa1.61□□□□□ -2.15
LSM5-205ENST00000409952 FDCSPQ8NFU4 85 aa1.61□□□□□ -2.15
LSM5-205ENST00000409952 PKDREJQ9NTG1 2253 aa1.61□□□□□ -2.15
LSM5-205ENST00000409952 KANTRA0A1W2PQU2 76 aa1.6□□□□□ -2.15
LSM5-205ENST00000409952 HAMPP81172 84 aa1.6□□□□□ -2.15
LSM5-205ENST00000409952 LINC00643Q86TS7 51 aa1.6□□□□□ -2.15
LSM5-205ENST00000409952 MUC2Q02817 5179 aa1.6□□□□□ -2.15
LSM5-205ENST00000409952 F5P12259 2224 aa1.59□□□□□ -2.15
LSM5-205ENST00000409952 LEPROTL1O95214 131 aa1.59□□□□□ -2.15
LSM5-205ENST00000409952 ACYP1P07311 99 aa1.59□□□□□ -2.15
LSM5-205ENST00000409952 C10orf113Q5VZT2 155 aa1.59□□□□□ -2.15
LSM5-205ENST00000409952 STAB2Q8WWQ8 2551 aa1.59□□□□□ -2.15
LSM5-205ENST00000409952 ANK2Q01484 3957 aa1.58□□□□□ -2.16
LSM5-205ENST00000409952 D6R8Y8 96 aa1.58□□□□□ -2.16
LSM5-205ENST00000409952 MUSTN1Q8IVN3 82 aa1.58□□□□□ -2.16
LSM5-205ENST00000409952 UBE2DNLQ8IWF7 75 aa1.58□□□□□ -2.16
LSM5-205ENST00000409952 HERC2O95714 4834 aa1.57□□□□□ -2.16
LSM5-205ENST00000409952 BSNQ9UPA5 3926 aa1.57□□□□□ -2.16
LSM5-205ENST00000409952 SPATA8Q6RVD6 105 aa1.57□□□□□ -2.16
LSM5-205ENST00000409952 ROS1P08922 2347 aa1.57□□□□□ -2.16
LSM5-205ENST00000409952 SVEP1Q4LDE5 3571 aa1.57□□□□□ -2.16
LSM5-205ENST00000409952 LAMA4Q16363 1823 aa1.56□□□□□ -2.16
LSM5-205ENST00000409952 ABCA13Q86UQ4 5058 aa1.56□□□□□ -2.16
LSM5-205ENST00000409952 ANKRD36CQ5JPF3 1778 aa1.56□□□□□ -2.16
LSM5-205ENST00000409952 COL7A1Q02388 2944 aa1.56□□□□□ -2.16
LSM5-205ENST00000409952 KNTC1P50748 2209 aa1.55□□□□□ -2.16
LSM5-205ENST00000409952 IQCF6A8MYZ5 107 aa1.55□□□□□ -2.16
LSM5-205ENST00000409952 PLAC8Q9NZF1 115 aa1.55□□□□□ -2.16
LSM5-205ENST00000409952 DMBT1Q9UGM3 2413 aaPredicted RBP1.55□□□□□ -2.16
LSM5-205ENST00000409952 TRBV6-1A0A0K0K1D8 114 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 MYMXA0A1B0GTQ4 84 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 H0Y9P7 68 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 COX6B1P14854 86 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 DEFB107AQ8IZN7 70 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 VPS13CQ709C8 3753 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 AKAP6Q13023 2319 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 KNL1Q8NG31 2342 aa1.54□□□□□ -2.16
LSM5-205ENST00000409952 A0A0D9SG42 100 aa1.53□□□□□ -2.16
LSM5-205ENST00000409952 S100A3P33764 101 aa1.53□□□□□ -2.16
LSM5-205ENST00000409952 BVES-AS1Q5T3Y7 98 aa1.52□□□□□ -2.17
LSM5-205ENST00000409952 SSBP3-AS1Q7Z2R9 100 aa1.52□□□□□ -2.17
LSM5-205ENST00000409952 PDCD11Q14690 1871 aaKnown RBP1.52□□□□□ -2.17
LSM5-205ENST00000409952 HERC1Q15751 4861 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 SPINK7P58062 85 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 GNGT1P63211 74 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 PLGLAQ15195 96 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 C10orf95Q9H7T3 257 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 UBE2D4Q9Y2X8 147 aa1.51□□□□□ -2.17
LSM5-205ENST00000409952 PRKDCP78527 4128 aaKnown RBP1.5□□□□□ -2.17
LSM5-205ENST00000409952 H3BUT2 72 aa1.5□□□□□ -2.17
LSM5-205ENST00000409952 IGLC2P0DOY2 106 aa1.5□□□□□ -2.17
LSM5-205ENST00000409952 IGLC3P0DOY3 106 aa1.5□□□□□ -2.17
LSM5-205ENST00000409952 SMR3AQ99954 134 aa1.5□□□□□ -2.17
LSM5-205ENST00000409952 FSIP2Q5CZC0 6907 aa1.49□□□□□ -2.17
LSM5-205ENST00000409952 MYO7BQ6PIF6 2116 aa1.48□□□□□ -2.17
LSM5-205ENST00000409952 CEBPZOSA8MTT3 80 aa1.48□□□□□ -2.17
LSM5-205ENST00000409952 C6orf201Q7Z4U5 140 aa1.48□□□□□ -2.17
LSM5-205ENST00000409952 CRCT1Q9UGL9 99 aa1.46□□□□□ -2.18
LSM5-205ENST00000409952 ZNF469Q96JG9 3925 aaPredicted RBP1.46□□□□□ -2.18
LSM5-205ENST00000409952 FAT4Q6V0I7 4981 aa1.45□□□□□ -2.18
LSM5-205ENST00000409952 A0A0D9SFI3 127 aa1.45□□□□□ -2.18
LSM5-205ENST00000409952 A0A1B0GU69 56 aa1.45□□□□□ -2.18
LSM5-205ENST00000409952 C18orf32Q8TCD1 76 aa1.45□□□□□ -2.18
LSM5-205ENST00000409952 FAM103A1Q9BTL3 118 aaKnown RBP1.45□□□□□ -2.18
LSM5-205ENST00000409952 GPR98Q8WXG9 6306 aa1.45□□□□□ -2.18
LSM5-205ENST00000409952 SRRM2Q9UQ35 2752 aaKnown RBP1.45□□□□□ -2.18
LSM5-205ENST00000409952 LCE6AA0A183 80 aa1.44□□□□□ -2.18
LSM5-205ENST00000409952 CADP27708 2225 aa1.44□□□□□ -2.18
LSM5-205ENST00000409952 TRRAPQ9Y4A5 3859 aa1.43□□□□□ -2.18
LSM5-205ENST00000409952 A0A1B0GUT8 65 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms