RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 PLAC8Q9NZF1 115 aa15.24■□□□□ 0.03
DNMT3A-206ENST00000406659 ATOX1O00244 68 aa15.24■□□□□ 0.03
DNMT3A-206ENST00000406659 KRTAP13-1Q8IUC0 172 aa15.23■□□□□ 0.03
DNMT3A-206ENST00000406659 ALMS1Q8TCU4 4167 aa15.21■□□□□ 0.03
DNMT3A-206ENST00000406659 SPRR1BP22528 89 aa15.21■□□□□ 0.02
DNMT3A-206ENST00000406659 SCXQ7RTU7 201 aa15.21■□□□□ 0.02
DNMT3A-206ENST00000406659 IGLV8-61A0A075B6I0 122 aa15.19■□□□□ 0.02
DNMT3A-206ENST00000406659 CCDC179H3BU77 68 aa15.19■□□□□ 0.02
DNMT3A-206ENST00000406659 SPRR4Q96PI1 79 aa15.19■□□□□ 0.02
DNMT3A-206ENST00000406659 IGFL1Q6UW32 110 aa15.18■□□□□ 0.02
DNMT3A-206ENST00000406659 PSORS1C2Q9UIG4 136 aa15.14■□□□□ 0.01
DNMT3A-206ENST00000406659 CRYGAP11844 174 aa15.13■□□□□ 0.01
DNMT3A-206ENST00000406659 BPY2O14599 106 aa15.13■□□□□ 0.01
DNMT3A-206ENST00000406659 A0A0G2JQZ4 141 aa15.12■□□□□ 0.01
DNMT3A-206ENST00000406659 KRTAP10-2P60368 255 aa15.11■□□□□ 0.01
DNMT3A-206ENST00000406659 UQCRQO14949 82 aa15.07■□□□□ 0
DNMT3A-206ENST00000406659 COX7CP15954 63 aa15.07■□□□□ 0
DNMT3A-206ENST00000406659 SRRM2Q9UQ35 2752 aaKnown RBP15.06■□□□□ 0
DNMT3A-206ENST00000406659 SERP2Q8N6R1 65 aa15.05■□□□□ -0
DNMT3A-206ENST00000406659 ZNF706Q9Y5V0 76 aaPredicted RBP15.04■□□□□ -0
DNMT3A-206ENST00000406659 Q8N9L7 120 aa15.03■□□□□ -0
DNMT3A-206ENST00000406659 FRAS1Q86XX4 4008 aa15.02■□□□□ -0
DNMT3A-206ENST00000406659 ZNF861PO60384 105 aa15.02□□□□□ -0.01
DNMT3A-206ENST00000406659 IGKV4-1P06312 121 aa15.01□□□□□ -0.01
DNMT3A-206ENST00000406659 FAM30AQ9NZY2 134 aa15.01□□□□□ -0.01
DNMT3A-206ENST00000406659 A0A087WSZ3 146 aa14.98□□□□□ -0.01
DNMT3A-206ENST00000406659 LINC00483Q53H64 154 aa14.98□□□□□ -0.01
DNMT3A-206ENST00000406659 C9orf153Q5TBE3 101 aa14.98□□□□□ -0.01
DNMT3A-206ENST00000406659 CIRBP-AS1Q8TBR5 109 aa14.97□□□□□ -0.01
DNMT3A-206ENST00000406659 IGLV9-49A0A0B4J1Y8 123 aa14.95□□□□□ -0.02
DNMT3A-206ENST00000406659 IGLV7-43P04211 117 aa14.94□□□□□ -0.02
DNMT3A-206ENST00000406659 DNAH8Q96JB1 4490 aa14.93□□□□□ -0.02
DNMT3A-206ENST00000406659 DNAH11Q96DT5 4516 aa14.93□□□□□ -0.02
DNMT3A-206ENST00000406659 KRTAP10-1P60331 282 aa14.93□□□□□ -0.02
DNMT3A-206ENST00000406659 SMIM20Q8N5G0 67 aa14.93□□□□□ -0.02
DNMT3A-206ENST00000406659 TRAV7A0A075B6U4 112 aa14.9□□□□□ -0.02
DNMT3A-206ENST00000406659 DSCR10P59022 87 aa14.9□□□□□ -0.02
DNMT3A-206ENST00000406659 Q6ZSA8 131 aa14.9□□□□□ -0.02
DNMT3A-206ENST00000406659 HYDINQ4G0P3 5121 aa14.88□□□□□ -0.03
DNMT3A-206ENST00000406659 RPL37AP61513 92 aaKnown RBP14.87□□□□□ -0.03
DNMT3A-206ENST00000406659 DNAH5Q8TE73 4624 aa14.87□□□□□ -0.03
DNMT3A-206ENST00000406659 DEFB116Q30KQ4 102 aa14.85□□□□□ -0.03
DNMT3A-206ENST00000406659 ANAPC11Q9NYG5 84 aa14.84□□□□□ -0.03
DNMT3A-206ENST00000406659 PKD1P98161 4303 aa14.83□□□□□ -0.04
DNMT3A-206ENST00000406659 K7EQZ3 153 aa14.83□□□□□ -0.04
DNMT3A-206ENST00000406659 MOBPQ13875 183 aa14.81□□□□□ -0.04
DNMT3A-206ENST00000406659 FAT2Q9NYQ8 4349 aa14.81□□□□□ -0.04
DNMT3A-206ENST00000406659 LCE6AA0A183 80 aa14.78□□□□□ -0.04
DNMT3A-206ENST00000406659 SS18L2Q9UHA2 77 aa14.78□□□□□ -0.04
DNMT3A-206ENST00000406659 LINC00472Q9H8W2 130 aa14.75□□□□□ -0.05
DNMT3A-206ENST00000406659 HRCT1Q6UXD1 115 aa14.75□□□□□ -0.05
DNMT3A-206ENST00000406659 C20orf197Q8N268 126 aa14.73□□□□□ -0.05
DNMT3A-206ENST00000406659 LINC00336Q6ZUF6 198 aa14.72□□□□□ -0.05
DNMT3A-206ENST00000406659 CYSTM1Q9H1C7 97 aa14.7□□□□□ -0.06
DNMT3A-206ENST00000406659 HCG22E2RYF7 251 aa14.7□□□□□ -0.06
DNMT3A-206ENST00000406659 OCR1Q9BZK8 76 aa14.69□□□□□ -0.06
DNMT3A-206ENST00000406659 J3KT08 172 aa14.68□□□□□ -0.06
DNMT3A-206ENST00000406659 A8MWP4 228 aa14.66□□□□□ -0.06
DNMT3A-206ENST00000406659 SACSQ9NZJ4 4579 aa14.66□□□□□ -0.06
DNMT3A-206ENST00000406659 PRR15Q8IV56 129 aa14.65□□□□□ -0.06
DNMT3A-206ENST00000406659 SSBP3-AS1Q7Z2R9 100 aa14.6□□□□□ -0.07
DNMT3A-206ENST00000406659 WFDC13Q8IUB5 93 aa14.6□□□□□ -0.07
DNMT3A-206ENST00000406659 Q96NJ1 140 aa14.6□□□□□ -0.07
DNMT3A-206ENST00000406659 KLKP1Q107X0 134 aa14.59□□□□□ -0.07
DNMT3A-206ENST00000406659 NDUFB1O75438 58 aa14.58□□□□□ -0.08
DNMT3A-206ENST00000406659 SNURFQ9Y675 71 aa14.58□□□□□ -0.08
DNMT3A-206ENST00000406659 TMEM258P61165 79 aa14.57□□□□□ -0.08
DNMT3A-206ENST00000406659 TMEM254Q8TBM7 123 aa14.55□□□□□ -0.08
DNMT3A-206ENST00000406659 CD164Q04900 197 aa14.55□□□□□ -0.08
DNMT3A-206ENST00000406659 LRP1BQ9NZR2 4599 aa14.54□□□□□ -0.08
DNMT3A-206ENST00000406659 FAM229BQ4G0N7 80 aa14.53□□□□□ -0.08
DNMT3A-206ENST00000406659 CASC2Q6XLA1 102 aa14.53□□□□□ -0.08
DNMT3A-206ENST00000406659 A0A1B0GVY2 172 aa14.52□□□□□ -0.09
DNMT3A-206ENST00000406659 KRTAP29-1A8MX34 341 aaPredicted RBP14.52□□□□□ -0.09
DNMT3A-206ENST00000406659 A0A087X002 238 aa14.5□□□□□ -0.09
DNMT3A-206ENST00000406659 CDK2AP2O75956 126 aa14.48□□□□□ -0.09
DNMT3A-206ENST00000406659 KRTAP13-2Q52LG2 175 aa14.47□□□□□ -0.09
DNMT3A-206ENST00000406659 H7BZZ5 65 aa14.47□□□□□ -0.09
DNMT3A-206ENST00000406659 A0A0U1RQV1 116 aa14.46□□□□□ -0.09
DNMT3A-206ENST00000406659 NDUFC1O43677 76 aa14.46□□□□□ -0.09
DNMT3A-206ENST00000406659 MMP24-AS1A0A0U1RRL7 71 aa14.45□□□□□ -0.1
DNMT3A-206ENST00000406659 KRTAP1-4P0C5Y4 121 aa14.44□□□□□ -0.1
DNMT3A-206ENST00000406659 C5orf47Q569G3 176 aa14.42□□□□□ -0.1
DNMT3A-206ENST00000406659 PKHD1P08F94 4074 aa14.42□□□□□ -0.1
DNMT3A-206ENST00000406659 A0A1B0GVX0 72 aa14.41□□□□□ -0.1
DNMT3A-206ENST00000406659 hDV103S1A0JD37 113 aa14.4□□□□□ -0.1
DNMT3A-206ENST00000406659 VPS13BQ7Z7G8 4022 aa14.4□□□□□ -0.1
DNMT3A-206ENST00000406659 IGHV6-1A0A0B4J1U7 121 aa14.39□□□□□ -0.11
DNMT3A-206ENST00000406659 C8orf17Q9NRJ1 99 aa14.39□□□□□ -0.11
DNMT3A-206ENST00000406659 SPINK6Q6UWN8 80 aa14.38□□□□□ -0.11
DNMT3A-206ENST00000406659 PLA2G1BP04054 148 aaKnown RBP14.37□□□□□ -0.11
DNMT3A-206ENST00000406659 SMR3BP02814 79 aaPredicted RBP14.36□□□□□ -0.11
DNMT3A-206ENST00000406659 ASB16-AS1Q495Z4 193 aa14.36□□□□□ -0.11
DNMT3A-206ENST00000406659 FAM236DA0A1B0GTK5 79 aa14.35□□□□□ -0.11
DNMT3A-206ENST00000406659 FAM236CP0DP71 79 aa14.35□□□□□ -0.11
DNMT3A-206ENST00000406659 RYR2Q92736 4967 aa14.33□□□□□ -0.12
DNMT3A-206ENST00000406659 DYNC1H1Q14204 4646 aaKnown RBP14.32□□□□□ -0.12
DNMT3A-206ENST00000406659 MP68P56378 58 aa14.31□□□□□ -0.12
DNMT3A-206ENST00000406659 TYMSOSQ8TAI1 123 aa14.29□□□□□ -0.12
DNMT3A-206ENST00000406659 Q5XG85 94 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms