RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 Q1T7F1 81 aa7.87□□□□□ -1.15
HMGB1-206ENST00000405805 C16orf90A8MZG2 172 aa7.87□□□□□ -1.15
HMGB1-206ENST00000405805 LINC00612Q8N6U2 182 aa7.87□□□□□ -1.15
HMGB1-206ENST00000405805 SPINK1P00995 79 aa7.86□□□□□ -1.15
HMGB1-206ENST00000405805 KRTAP24-1Q3LI83 254 aa7.86□□□□□ -1.15
HMGB1-206ENST00000405805 LINC00167Q96N53 147 aa7.85□□□□□ -1.15
HMGB1-206ENST00000405805 EPM2AB3EWF7 344 aa7.85□□□□□ -1.15
HMGB1-206ENST00000405805 DHRS4-AS1Q9P1J3 65 aa7.85□□□□□ -1.15
HMGB1-206ENST00000405805 FBN1P35555 2871 aaKnown RBP7.84□□□□□ -1.15
HMGB1-206ENST00000405805 PRR34Q9NV39 138 aa7.84□□□□□ -1.15
HMGB1-206ENST00000405805 A8MU10 97 aa7.83□□□□□ -1.16
HMGB1-206ENST00000405805 A0A1B0GU69 56 aa7.83□□□□□ -1.16
HMGB1-206ENST00000405805 LINC00588Q9Y4M8 146 aa7.83□□□□□ -1.16
HMGB1-206ENST00000405805 C15orf56Q8N910 161 aa7.83□□□□□ -1.16
HMGB1-206ENST00000405805 LINC00528Q8N1L1 170 aa7.82□□□□□ -1.16
HMGB1-206ENST00000405805 LINC01554Q52M75 96 aa7.82□□□□□ -1.16
HMGB1-206ENST00000405805 CASC10Q5T4H9 136 aa7.82□□□□□ -1.16
HMGB1-206ENST00000405805 OCR1Q9BZK8 76 aa7.81□□□□□ -1.16
HMGB1-206ENST00000405805 KRTAP10-11P60412 298 aa7.81□□□□□ -1.16
HMGB1-206ENST00000405805 IGHV6-1A0A0B4J1U7 121 aa7.81□□□□□ -1.16
HMGB1-206ENST00000405805 K7ERS5 55 aa7.8□□□□□ -1.16
HMGB1-206ENST00000405805 PKD1L1Q8TDX9 2849 aa7.8□□□□□ -1.16
HMGB1-206ENST00000405805 Q8N377 158 aa7.8□□□□□ -1.16
HMGB1-206ENST00000405805 CDC42SE1Q9NRR8 79 aa7.79□□□□□ -1.16
HMGB1-206ENST00000405805 REG3GQ6UW15 175 aa7.78□□□□□ -1.16
HMGB1-206ENST00000405805 GVQW2A0A096LPI5 108 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-206ENST00000405805 IGLV9-49A0A0B4J1Y8 123 aa7.78□□□□□ -1.16
HMGB1-206ENST00000405805 Q5VV11 94 aa7.78□□□□□ -1.16
HMGB1-206ENST00000405805 TENM3Q9P273 2699 aa7.78□□□□□ -1.16
HMGB1-206ENST00000405805 STAB2Q8WWQ8 2551 aa7.78□□□□□ -1.16
HMGB1-206ENST00000405805 KMT2BQ9UMN6 2715 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-206ENST00000405805 LINC01556Q5JQF7 62 aa7.77□□□□□ -1.17
HMGB1-206ENST00000405805 Q6ZRX8 168 aa7.77□□□□□ -1.17
HMGB1-206ENST00000405805 CHTF8P0CG12 524 aa7.76□□□□□ -1.17
HMGB1-206ENST00000405805 LINC00313P59037 77 aa7.76□□□□□ -1.17
HMGB1-206ENST00000405805 Q8NBF4 154 aa7.76□□□□□ -1.17
HMGB1-206ENST00000405805 DMBT1Q9UGM3 2413 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-206ENST00000405805 Q9BRP9 147 aa7.75□□□□□ -1.17
HMGB1-206ENST00000405805 LINC00476Q8WZB0 136 aa7.74□□□□□ -1.17
HMGB1-206ENST00000405805 Q8N9P0 234 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-206ENST00000405805 A0A1W2PNM2 257 aa7.73□□□□□ -1.17
HMGB1-206ENST00000405805 SPINT4Q6UDR6 99 aa7.73□□□□□ -1.17
HMGB1-206ENST00000405805 TRRAPQ9Y4A5 3859 aa7.72□□□□□ -1.17
HMGB1-206ENST00000405805 KCNQ1DNQ9H478 68 aa7.7□□□□□ -1.18
HMGB1-206ENST00000405805 PHF5AQ7RTV0 110 aaKnown RBP7.7□□□□□ -1.18
HMGB1-206ENST00000405805 PRR26Q8N8Z3 221 aa7.69□□□□□ -1.18
HMGB1-206ENST00000405805 SSBP3-AS1Q7Z2R9 100 aa7.68□□□□□ -1.18
HMGB1-206ENST00000405805 MOBPQ13875 183 aa7.68□□□□□ -1.18
HMGB1-206ENST00000405805 IGLV1-50A0A075B6I6 118 aa7.67□□□□□ -1.18
HMGB1-206ENST00000405805 FLG2Q5D862 2391 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-206ENST00000405805 SPINK7P58062 85 aa7.66□□□□□ -1.18
HMGB1-206ENST00000405805 C1orf134Q5TEV5 83 aa7.65□□□□□ -1.18
HMGB1-206ENST00000405805 MIR22HGQ0VDD5 57 aa7.64□□□□□ -1.19
HMGB1-206ENST00000405805 IGFL1Q6UW32 110 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 H3BNG1 76 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 H3BPC8 53 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 CSAG1Q6PB30 78 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 ANK3Q12955 4377 aaKnown RBP7.63□□□□□ -1.19
HMGB1-206ENST00000405805 ACYP2P14621 99 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 DNAH10OSP0CZ25 163 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 Q75L30 129 aa7.63□□□□□ -1.19
HMGB1-206ENST00000405805 UQCR11O14957 56 aa7.62□□□□□ -1.19
HMGB1-206ENST00000405805 K7EIL1 84 aa7.6□□□□□ -1.19
HMGB1-206ENST00000405805 DSCR10P59022 87 aa7.59□□□□□ -1.19
HMGB1-206ENST00000405805 IGKV2D-30A0A075B6S6 120 aa7.59□□□□□ -1.2
HMGB1-206ENST00000405805 IGKV2-30P06310 120 aa7.59□□□□□ -1.2
HMGB1-206ENST00000405805 IGLV5-48A0A075B6I7 105 aa7.58□□□□□ -1.2
HMGB1-206ENST00000405805 ADM2Q7Z4H4 148 aa7.58□□□□□ -1.2
HMGB1-206ENST00000405805 KRTAP26-1Q6PEX3 210 aa7.58□□□□□ -1.2
HMGB1-206ENST00000405805 C14orf177Q52M58 125 aa7.57□□□□□ -1.2
HMGB1-206ENST00000405805 ANAPC11Q9NYG5 84 aa7.57□□□□□ -1.2
HMGB1-206ENST00000405805 TENM2Q9NT68 2774 aa7.56□□□□□ -1.2
HMGB1-206ENST00000405805 AKAP9Q99996 3911 aa7.56□□□□□ -1.2
HMGB1-206ENST00000405805 A8MWP4 228 aa7.55□□□□□ -1.2
HMGB1-206ENST00000405805 SPANXA2-OT1Q8N9U9 137 aa7.54□□□□□ -1.2
HMGB1-206ENST00000405805 CIRBP-AS1Q8TBR5 109 aa7.54□□□□□ -1.2
HMGB1-206ENST00000405805 TP53AIP1Q9HCN2 124 aa7.54□□□□□ -1.2
HMGB1-206ENST00000405805 CRIPTQ9P021 101 aa7.53□□□□□ -1.2
HMGB1-206ENST00000405805 A0A1B0GW54 56 aa7.53□□□□□ -1.2
HMGB1-206ENST00000405805 C9orf163Q8N9P6 203 aa7.52□□□□□ -1.2
HMGB1-206ENST00000405805 A6NN06 94 aa7.5□□□□□ -1.21
HMGB1-206ENST00000405805 TLX1NBP0CAT3 122 aa7.48□□□□□ -1.21
HMGB1-206ENST00000405805 SRRM2Q9UQ35 2752 aaKnown RBP7.48□□□□□ -1.21
HMGB1-206ENST00000405805 LINC01558Q9Y6Z2 57 aa7.47□□□□□ -1.21
HMGB1-206ENST00000405805 KRTAP1-5Q9BYS1 174 aa7.45□□□□□ -1.22
HMGB1-206ENST00000405805 SPRR4Q96PI1 79 aa7.45□□□□□ -1.22
HMGB1-206ENST00000405805 LY6G6CO95867 125 aa7.43□□□□□ -1.22
HMGB1-206ENST00000405805 PLA2G2DQ9UNK4 145 aa7.43□□□□□ -1.22
HMGB1-206ENST00000405805 RTL8CO15255 209 aa7.43□□□□□ -1.22
HMGB1-206ENST00000405805 IGLV7-46A0A075B6I9 117 aa7.43□□□□□ -1.22
HMGB1-206ENST00000405805 KRTAP7-1Q8IUC3 87 aa7.42□□□□□ -1.22
HMGB1-206ENST00000405805 SPRR1AP35321 89 aa7.42□□□□□ -1.22
HMGB1-206ENST00000405805 KRTAP4-16G5E9R7 235 aaPredicted RBP7.4□□□□□ -1.23
HMGB1-206ENST00000405805 MRPL34Q9BQ48 92 aaKnown RBP7.39□□□□□ -1.23
HMGB1-206ENST00000405805 NBDYA0A0U1RRE5 68 aa7.39□□□□□ -1.23
HMGB1-206ENST00000405805 HRES1P13985 223 aa7.39□□□□□ -1.23
HMGB1-206ENST00000405805 TNP2Q05952 138 aa7.39□□□□□ -1.23
HMGB1-206ENST00000405805 NUPR2A6NF83 97 aa7.38□□□□□ -1.23
HMGB1-206ENST00000405805 C8orf17Q9NRJ1 99 aa7.38□□□□□ -1.23
HMGB1-206ENST00000405805 IGLV5-37A0A075B6J1 123 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms