RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 APCP25054 2843 aa6.01□□□□□ -1.45
COL28A1-201ENST00000399429 ACYP2P14621 99 aa6□□□□□ -1.45
COL28A1-201ENST00000399429 HRNRQ86YZ3 2850 aaPredicted RBP6□□□□□ -1.45
COL28A1-201ENST00000399429 LINC01556Q5JQF7 62 aa6□□□□□ -1.45
COL28A1-201ENST00000399429 PRR26Q8N8Z3 221 aa6□□□□□ -1.45
COL28A1-201ENST00000399429 FBN2P35556 2912 aa6□□□□□ -1.45
COL28A1-201ENST00000399429 NOTCH1P46531 2555 aa6□□□□□ -1.45
COL28A1-201ENST00000399429 SPRR4Q96PI1 79 aa5.99□□□□□ -1.45
COL28A1-201ENST00000399429 HELZ2Q9BYK8 2649 aaKnown RBP5.99□□□□□ -1.45
COL28A1-201ENST00000399429 UTP20O75691 2785 aaKnown RBP5.99□□□□□ -1.45
COL28A1-201ENST00000399429 CELSR1Q9NYQ6 3014 aa5.98□□□□□ -1.45
COL28A1-201ENST00000399429 FLNCQ14315 2725 aa5.98□□□□□ -1.45
COL28A1-201ENST00000399429 MOBPQ13875 183 aa5.98□□□□□ -1.45
COL28A1-201ENST00000399429 SPINK7P58062 85 aa5.97□□□□□ -1.45
COL28A1-201ENST00000399429 CFAP46Q8IYW2 2715 aa5.97□□□□□ -1.45
COL28A1-201ENST00000399429 LINC00313P59037 77 aa5.97□□□□□ -1.45
COL28A1-201ENST00000399429 NF1P21359 2839 aa5.96□□□□□ -1.45
COL28A1-201ENST00000399429 CRYBG3Q68DQ2 2970 aa5.96□□□□□ -1.45
COL28A1-201ENST00000399429 ZCCHC13Q8WW36 166 aaKnown RBP5.96□□□□□ -1.46
COL28A1-201ENST00000399429 PHF5AQ7RTV0 110 aaKnown RBP5.96□□□□□ -1.46
COL28A1-201ENST00000399429 LINC01554Q52M75 96 aa5.95□□□□□ -1.46
COL28A1-201ENST00000399429 IGLV7-46A0A075B6I9 117 aa5.95□□□□□ -1.46
COL28A1-201ENST00000399429 CIRBP-AS1Q8TBR5 109 aa5.94□□□□□ -1.46
COL28A1-201ENST00000399429 COL6A5A8TX70 2615 aa5.94□□□□□ -1.46
COL28A1-201ENST00000399429 CELSR2Q9HCU4 2923 aa5.93□□□□□ -1.46
COL28A1-201ENST00000399429 K7ERS5 55 aa5.93□□□□□ -1.46
COL28A1-201ENST00000399429 CHTF8P0CG12 524 aa5.93□□□□□ -1.46
COL28A1-201ENST00000399429 UQCR11O14957 56 aa5.93□□□□□ -1.46
COL28A1-201ENST00000399429 MIR22HGQ0VDD5 57 aa5.93□□□□□ -1.46
COL28A1-201ENST00000399429 LINC01558Q9Y6Z2 57 aa5.92□□□□□ -1.46
COL28A1-201ENST00000399429 SETXQ7Z333 2677 aaKnown RBP5.92□□□□□ -1.46
COL28A1-201ENST00000399429 UBR5O95071 2799 aaPredicted RBP5.92□□□□□ -1.46
COL28A1-201ENST00000399429 TEP1Q99973 2627 aaKnown RBP5.92□□□□□ -1.46
COL28A1-201ENST00000399429 CNBPP62633 177 aaKnown RBP5.92□□□□□ -1.46
COL28A1-201ENST00000399429 MRPL34Q9BQ48 92 aaKnown RBP5.92□□□□□ -1.46
COL28A1-201ENST00000399429 C8orf17Q9NRJ1 99 aa5.92□□□□□ -1.46
COL28A1-201ENST00000399429 IGKV2D-30A0A075B6S6 120 aa5.91□□□□□ -1.46
COL28A1-201ENST00000399429 IGKV2-30P06310 120 aa5.91□□□□□ -1.46
COL28A1-201ENST00000399429 CASC10Q5T4H9 136 aa5.91□□□□□ -1.46
COL28A1-201ENST00000399429 ZNF706Q9Y5V0 76 aaPredicted RBP5.91□□□□□ -1.46
COL28A1-201ENST00000399429 STAB1Q9NY15 2570 aa5.89□□□□□ -1.47
COL28A1-201ENST00000399429 H3BNG1 76 aa5.89□□□□□ -1.47
COL28A1-201ENST00000399429 A6NN06 94 aa5.88□□□□□ -1.47
COL28A1-201ENST00000399429 LY6G6CO95867 125 aa5.88□□□□□ -1.47
COL28A1-201ENST00000399429 HRES1P13985 223 aa5.87□□□□□ -1.47
COL28A1-201ENST00000399429 C9orf163Q8N9P6 203 aa5.87□□□□□ -1.47
COL28A1-201ENST00000399429 LCE6AA0A183 80 aa5.87□□□□□ -1.47
COL28A1-201ENST00000399429 PLA2G2DQ9UNK4 145 aa5.87□□□□□ -1.47
COL28A1-201ENST00000399429 TLX1NBP0CAT3 122 aa5.86□□□□□ -1.47
COL28A1-201ENST00000399429 NBEAL1Q6ZS30 2694 aa5.86□□□□□ -1.47
COL28A1-201ENST00000399429 TNP2Q05952 138 aa5.85□□□□□ -1.47
COL28A1-201ENST00000399429 A0A1B0GVX0 72 aa5.85□□□□□ -1.47
COL28A1-201ENST00000399429 DNAH10OSP0CZ25 163 aa5.85□□□□□ -1.47
COL28A1-201ENST00000399429 MXRA5Q9NR99 2828 aa5.85□□□□□ -1.47
COL28A1-201ENST00000399429 DMBT1Q9UGM3 2413 aaPredicted RBP5.84□□□□□ -1.47
COL28A1-201ENST00000399429 HIVEP1P15822 2718 aa5.84□□□□□ -1.47
COL28A1-201ENST00000399429 MMP24-AS1A0A0U1RRL7 71 aa5.84□□□□□ -1.48
COL28A1-201ENST00000399429 CSAG1Q6PB30 78 aa5.83□□□□□ -1.48
COL28A1-201ENST00000399429 SPRR1AP35321 89 aa5.82□□□□□ -1.48
COL28A1-201ENST00000399429 ADM2Q7Z4H4 148 aa5.82□□□□□ -1.48
COL28A1-201ENST00000399429 KRTAP10-3P60369 221 aa5.81□□□□□ -1.48
COL28A1-201ENST00000399429 KRTAP29-1A8MX34 341 aaPredicted RBP5.81□□□□□ -1.48
COL28A1-201ENST00000399429 ANAPC11Q9NYG5 84 aa5.81□□□□□ -1.48
COL28A1-201ENST00000399429 IGLV5-37A0A075B6J1 123 aa5.8□□□□□ -1.48
COL28A1-201ENST00000399429 LINC00472Q9H8W2 130 aa5.8□□□□□ -1.48
COL28A1-201ENST00000399429 SSBP3-AS1Q7Z2R9 100 aa5.79□□□□□ -1.48
COL28A1-201ENST00000399429 NIPBLQ6KC79 2804 aaeCLIP5.79□□□□□ -1.48
COL28A1-201ENST00000399429 IGLV5-52A0A0A0MRZ9 124 aa5.78□□□□□ -1.48
COL28A1-201ENST00000399429 NUPR2A6NF83 97 aa5.77□□□□□ -1.49
COL28A1-201ENST00000399429 KRTAP26-1Q6PEX3 210 aa5.77□□□□□ -1.49
COL28A1-201ENST00000399429 RTL8CO15255 209 aa5.77□□□□□ -1.49
COL28A1-201ENST00000399429 C1orf134Q5TEV5 83 aa5.77□□□□□ -1.49
COL28A1-201ENST00000399429 KRTAP4-16G5E9R7 235 aaPredicted RBP5.76□□□□□ -1.49
COL28A1-201ENST00000399429 FAM229AH3BQW9 127 aa5.76□□□□□ -1.49
COL28A1-201ENST00000399429 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
COL28A1-201ENST00000399429 IGSF10Q6WRI0 2623 aa5.75□□□□□ -1.49
COL28A1-201ENST00000399429 FLG2Q5D862 2391 aaPredicted RBP5.75□□□□□ -1.49
COL28A1-201ENST00000399429 K7EIL1 84 aa5.74□□□□□ -1.49
COL28A1-201ENST00000399429 NSD1Q96L73 2696 aaPredicted RBP5.73□□□□□ -1.49
COL28A1-201ENST00000399429 SPACA4Q8TDM5 124 aa5.72□□□□□ -1.49
COL28A1-201ENST00000399429 KRTAP1-3Q8IUG1 177 aa5.69□□□□□ -1.5
COL28A1-201ENST00000399429 PLA2G1BP04054 148 aaKnown RBP5.68□□□□□ -1.5
COL28A1-201ENST00000399429 CRIPTQ9P021 101 aa5.68□□□□□ -1.5
COL28A1-201ENST00000399429 KRTAP10-11P60412 298 aa5.67□□□□□ -1.5
COL28A1-201ENST00000399429 Q8N1X5 172 aa5.66□□□□□ -1.5
COL28A1-201ENST00000399429 CSMD2Q7Z408 3487 aa5.66□□□□□ -1.5
COL28A1-201ENST00000399429 Q6ZR54 194 aa5.65□□□□□ -1.5
COL28A1-201ENST00000399429 KRTAP7-1Q8IUC3 87 aa5.65□□□□□ -1.51
COL28A1-201ENST00000399429 KRTAP24-1Q3LI83 254 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 Q96NJ1 140 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 STAB2Q8WWQ8 2551 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 A0A087X002 238 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 NOTCH2NLQ7Z3S9 236 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 SPRR1BP22528 89 aa5.63□□□□□ -1.51
COL28A1-201ENST00000399429 KRTAP1-1Q07627 177 aa5.62□□□□□ -1.51
COL28A1-201ENST00000399429 ITPR2Q14571 2701 aa5.62□□□□□ -1.51
COL28A1-201ENST00000399429 ZNF861PO60384 105 aa5.62□□□□□ -1.51
COL28A1-201ENST00000399429 PSORS1C2Q9UIG4 136 aa5.62□□□□□ -1.51
COL28A1-201ENST00000399429 SPATA8Q6RVD6 105 aa5.61□□□□□ -1.51
COL28A1-201ENST00000399429 Q5W150 140 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms