RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SPINK7P58062 85 aa4.47□□□□□ -1.69
UPF2-203ENST00000397053 PLAC8Q9NZF1 115 aa4.47□□□□□ -1.69
UPF2-203ENST00000397053 DMAC1Q96GE9 116 aa4.46□□□□□ -1.7
UPF2-203ENST00000397053 LCE6AA0A183 80 aa4.46□□□□□ -1.7
UPF2-203ENST00000397053 NSD1Q96L73 2696 aaPredicted RBP4.44□□□□□ -1.7
UPF2-203ENST00000397053 Q8N9P0 234 aaPredicted RBP4.44□□□□□ -1.7
UPF2-203ENST00000397053 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
UPF2-203ENST00000397053 ZNF292O60281 2723 aa4.43□□□□□ -1.7
UPF2-203ENST00000397053 CEP350Q5VT06 3117 aa4.42□□□□□ -1.7
UPF2-203ENST00000397053 M0QZ58 72 aa4.41□□□□□ -1.7
UPF2-203ENST00000397053 MAP1AP78559 2803 aaPredicted RBP4.4□□□□□ -1.7
UPF2-203ENST00000397053 OCR1Q9BZK8 76 aa4.4□□□□□ -1.71
UPF2-203ENST00000397053 WIPF1O43516 503 aa4.4□□□□□ -1.71
UPF2-203ENST00000397053 OXTP01178 125 aa4.4□□□□□ -1.71
UPF2-203ENST00000397053 MMP24-AS1A0A0U1RRL7 71 aa4.38□□□□□ -1.71
UPF2-203ENST00000397053 UBR5O95071 2799 aaPredicted RBP4.38□□□□□ -1.71
UPF2-203ENST00000397053 H1FX-AS1Q4G0G2 97 aa4.38□□□□□ -1.71
UPF2-203ENST00000397053 Q5W150 140 aa4.37□□□□□ -1.71
UPF2-203ENST00000397053 KRTAP10-1P60331 282 aa4.37□□□□□ -1.71
UPF2-203ENST00000397053 FLNCQ14315 2725 aa4.36□□□□□ -1.71
UPF2-203ENST00000397053 FP248Q71RG6 208 aaPredicted RBP4.36□□□□□ -1.71
UPF2-203ENST00000397053 RPL37P61927 97 aaKnown RBP4.36□□□□□ -1.71
UPF2-203ENST00000397053 UTP20O75691 2785 aaKnown RBP4.35□□□□□ -1.71
UPF2-203ENST00000397053 EP400Q96L91 3159 aa4.35□□□□□ -1.71
UPF2-203ENST00000397053 CHD9Q3L8U1 2897 aa4.34□□□□□ -1.72
UPF2-203ENST00000397053 KRTAP10-2P60368 255 aa4.34□□□□□ -1.72
UPF2-203ENST00000397053 GCN1Q92616 2671 aaKnown RBP4.33□□□□□ -1.72
UPF2-203ENST00000397053 SPRR1AP35321 89 aa4.33□□□□□ -1.72
UPF2-203ENST00000397053 PCSK5Q92824 1860 aa4.33□□□□□ -1.72
UPF2-203ENST00000397053 SPRR1BP22528 89 aa4.33□□□□□ -1.72
UPF2-203ENST00000397053 TRANK1O15050 2925 aa4.33□□□□□ -1.72
UPF2-203ENST00000397053 LINC01558Q9Y6Z2 57 aa4.33□□□□□ -1.72
UPF2-203ENST00000397053 KRTAP1-5Q9BYS1 174 aa4.32□□□□□ -1.72
UPF2-203ENST00000397053 GOLGB1Q14789 3259 aaKnown RBP4.32□□□□□ -1.72
UPF2-203ENST00000397053 Q75L30 129 aa4.32□□□□□ -1.72
UPF2-203ENST00000397053 LINC00472Q9H8W2 130 aa4.31□□□□□ -1.72
UPF2-203ENST00000397053 ADM2Q7Z4H4 148 aa4.28□□□□□ -1.72
UPF2-203ENST00000397053 PRAC1Q96KF2 57 aa4.28□□□□□ -1.72
UPF2-203ENST00000397053 ROMO1P60602 79 aa4.27□□□□□ -1.73
UPF2-203ENST00000397053 TENM4Q6N022 2769 aa4.27□□□□□ -1.73
UPF2-203ENST00000397053 REV3LO60673 3130 aa4.25□□□□□ -1.73
UPF2-203ENST00000397053 PANO1I0J062 215 aa4.24□□□□□ -1.73
UPF2-203ENST00000397053 Q8NDZ9 215 aa4.24□□□□□ -1.73
UPF2-203ENST00000397053 HIVEP1P15822 2718 aa4.24□□□□□ -1.73
UPF2-203ENST00000397053 NBEAL2Q6ZNJ1 2754 aa4.22□□□□□ -1.73
UPF2-203ENST00000397053 Q6ZR54 194 aa4.21□□□□□ -1.74
UPF2-203ENST00000397053 C20orf166-AS1Q96NR2 134 aa4.21□□□□□ -1.74
UPF2-203ENST00000397053 UTRNP46939 3433 aa4.21□□□□□ -1.74
UPF2-203ENST00000397053 TENM3Q9P273 2699 aa4.21□□□□□ -1.74
UPF2-203ENST00000397053 KRTAP26-1Q6PEX3 210 aa4.21□□□□□ -1.74
UPF2-203ENST00000397053 A0A087X002 238 aa4.2□□□□□ -1.74
UPF2-203ENST00000397053 SPATA8Q6RVD6 105 aa4.2□□□□□ -1.74
UPF2-203ENST00000397053 ITPR2Q14571 2701 aa4.19□□□□□ -1.74
UPF2-203ENST00000397053 FRYQ5TBA9 3013 aa4.18□□□□□ -1.74
UPF2-203ENST00000397053 Q5VV11 94 aa4.18□□□□□ -1.74
UPF2-203ENST00000397053 C5orf42Q9H799 3197 aa4.18□□□□□ -1.74
UPF2-203ENST00000397053 A8MUU9 505 aa4.18□□□□□ -1.74
UPF2-203ENST00000397053 DNAH12Q6ZR08 3092 aa4.16□□□□□ -1.74
UPF2-203ENST00000397053 H3BS24 57 aa4.15□□□□□ -1.75
UPF2-203ENST00000397053 RPS29P62273 56 aaKnown RBP4.11□□□□□ -1.75
UPF2-203ENST00000397053 TNP1P09430 55 aa4.1□□□□□ -1.75
UPF2-203ENST00000397053 A0A0C4DFX4 3053 aa4.1□□□□□ -1.75
UPF2-203ENST00000397053 ITPR1Q14643 2758 aa4.09□□□□□ -1.75
UPF2-203ENST00000397053 MGAQ8IWI9 3026 aa4.08□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP4-16G5E9R7 235 aaPredicted RBP4.08□□□□□ -1.76
UPF2-203ENST00000397053 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
UPF2-203ENST00000397053 DSPP15924 2871 aaKnown RBP4.07□□□□□ -1.76
UPF2-203ENST00000397053 PCNTO95613 3336 aa4.07□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP29-1A8MX34 341 aaPredicted RBP4.07□□□□□ -1.76
UPF2-203ENST00000397053 CYSTM1Q9H1C7 97 aa4.07□□□□□ -1.76
UPF2-203ENST00000397053 ASB16-AS1Q495Z4 193 aa4.06□□□□□ -1.76
UPF2-203ENST00000397053 Q5XG85 94 aa4.06□□□□□ -1.76
UPF2-203ENST00000397053 A8MU10 97 aa4.05□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP10-8P60410 259 aa4.04□□□□□ -1.76
UPF2-203ENST00000397053 TACC2O95359 2948 aa4.04□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP21-3Q3LHN1 58 aa4.03□□□□□ -1.76
UPF2-203ENST00000397053 Q6ZRN7 208 aaPredicted RBP4.03□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP16-1A8MUX0 517 aa4.03□□□□□ -1.76
UPF2-203ENST00000397053 KRTAP13-2Q52LG2 175 aa4.02□□□□□ -1.77
UPF2-203ENST00000397053 KALRNO60229 2985 aa4□□□□□ -1.77
UPF2-203ENST00000397053 KRTAP11-1Q8IUC1 163 aa4□□□□□ -1.77
UPF2-203ENST00000397053 C10orf95Q9H7T3 257 aa4□□□□□ -1.77
UPF2-203ENST00000397053 TENM2Q9NT68 2774 aa3.99□□□□□ -1.77
UPF2-203ENST00000397053 TENM1Q9UKZ4 2725 aa3.99□□□□□ -1.77
UPF2-203ENST00000397053 CFAP54Q96N23 3096 aa3.98□□□□□ -1.77
UPF2-203ENST00000397053 CRYBG3Q68DQ2 2970 aa3.97□□□□□ -1.77
UPF2-203ENST00000397053 DMXL2Q8TDJ6 3036 aa3.97□□□□□ -1.77
UPF2-203ENST00000397053 NIPBLQ6KC79 2804 aaeCLIP3.97□□□□□ -1.773e-6■□□□□ 9.5
UPF2-203ENST00000397053 LAMA2P24043 3122 aaKnown RBP3.96□□□□□ -1.77
UPF2-203ENST00000397053 KRTAP25-1Q3LHN0 102 aa3.96□□□□□ -1.77
UPF2-203ENST00000397053 A0A1B0GVY2 172 aa3.96□□□□□ -1.78
UPF2-203ENST00000397053 APCP25054 2843 aa3.95□□□□□ -1.78
UPF2-203ENST00000397053 NF1P21359 2839 aa3.95□□□□□ -1.78
UPF2-203ENST00000397053 KRTAP10-10P60014 251 aa3.95□□□□□ -1.78
UPF2-203ENST00000397053 TRIOO75962 3097 aa3.94□□□□□ -1.78
UPF2-203ENST00000397053 NDUFAF8A1L188 74 aa3.94□□□□□ -1.78
UPF2-203ENST00000397053 ASH1LQ9NR48 2969 aaKnown RBP3.93□□□□□ -1.78
UPF2-203ENST00000397053 WDFY4Q6ZS81 3184 aa3.93□□□□□ -1.78
UPF2-203ENST00000397053 PRO2289Q9P1D8 64 aa3.92□□□□□ -1.78
UPF2-203ENST00000397053 KRTAP13-1Q8IUC0 172 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms