RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 Q8N1X5 172 aa6.38□□□□□ -1.39
VPS53-202ENST00000389040 DHRS4-AS1Q9P1J3 65 aa6.38□□□□□ -1.39
VPS53-202ENST00000389040 ETDCA0A1B0GVM5 59 aa6.38□□□□□ -1.39
VPS53-202ENST00000389040 B5MCH6 92 aa6.38□□□□□ -1.39
VPS53-202ENST00000389040 IGKV3D-7A0A0C4DH55 119 aa6.37□□□□□ -1.39
VPS53-202ENST00000389040 TRBV7-4A0A0J9YYF1 115 aa6.37□□□□□ -1.39
VPS53-202ENST00000389040 FAM236AA0A1B0GUQ0 79 aa6.37□□□□□ -1.39
VPS53-202ENST00000389040 FAM236BA0A1B0GV22 79 aa6.37□□□□□ -1.39
VPS53-202ENST00000389040 Q9BRP9 147 aa6.36□□□□□ -1.39
VPS53-202ENST00000389040 UBL5Q9BZL1 73 aa6.36□□□□□ -1.39
VPS53-202ENST00000389040 DNAH8Q96JB1 4490 aa6.36□□□□□ -1.39
VPS53-202ENST00000389040 PLA2G1BP04054 148 aaKnown RBP6.35□□□□□ -1.39
VPS53-202ENST00000389040 ATP5EP2Q5VTU8 51 aa6.35□□□□□ -1.39
VPS53-202ENST00000389040 APOBP04114 4563 aaKnown RBP6.35□□□□□ -1.39
VPS53-202ENST00000389040 REG3GQ6UW15 175 aa6.35□□□□□ -1.39
VPS53-202ENST00000389040 DEFB105AQ8NG35 78 aa6.35□□□□□ -1.39
VPS53-202ENST00000389040 KIAA1109Q2LD37 5005 aa6.34□□□□□ -1.39
VPS53-202ENST00000389040 A0A1W2PNN7 141 aa6.34□□□□□ -1.39
VPS53-202ENST00000389040 Q8N377 158 aa6.34□□□□□ -1.39
VPS53-202ENST00000389040 LINC01547P58512 204 aaPredicted RBP6.33□□□□□ -1.4
VPS53-202ENST00000389040 HSPG2P98160 4391 aa6.33□□□□□ -1.4
VPS53-202ENST00000389040 SMR3BP02814 79 aaPredicted RBP6.32□□□□□ -1.4
VPS53-202ENST00000389040 UBE2BP63146 152 aa6.32□□□□□ -1.4
VPS53-202ENST00000389040 RYR1P21817 5038 aa6.32□□□□□ -1.4
VPS53-202ENST00000389040 IGLV5-48A0A075B6I7 105 aa6.31□□□□□ -1.4
VPS53-202ENST00000389040 HIST1H4AP62805 103 aaKnown RBP6.31□□□□□ -1.4
VPS53-202ENST00000389040 HAMPP81172 84 aa6.31□□□□□ -1.4
VPS53-202ENST00000389040 Q5VSD8 79 aa6.31□□□□□ -1.4
VPS53-202ENST00000389040 Q6ZVQ6 151 aa6.31□□□□□ -1.4
VPS53-202ENST00000389040 ST20-AS1Q8NBB2 130 aa6.31□□□□□ -1.4
VPS53-202ENST00000389040 ERC2-IT1O76042 136 aa6.3□□□□□ -1.4
VPS53-202ENST00000389040 RPL37AP61513 92 aaKnown RBP6.3□□□□□ -1.4
VPS53-202ENST00000389040 A0A087WVE0 104 aa6.29□□□□□ -1.4
VPS53-202ENST00000389040 CCDC179H3BU77 68 aa6.29□□□□□ -1.4
VPS53-202ENST00000389040 FAM19A1Q7Z5A9 133 aa6.29□□□□□ -1.4
VPS53-202ENST00000389040 C3orf22Q8N5N4 141 aa6.29□□□□□ -1.4
VPS53-202ENST00000389040 ATOX1O00244 68 aa6.28□□□□□ -1.4
VPS53-202ENST00000389040 PHF5AQ7RTV0 110 aaKnown RBP6.28□□□□□ -1.4
VPS53-202ENST00000389040 PRLHP81277 87 aa6.27□□□□□ -1.41
VPS53-202ENST00000389040 HERC2O95714 4834 aa6.26□□□□□ -1.41
VPS53-202ENST00000389040 KRTAP10-4P60372 401 aaPredicted RBP6.26□□□□□ -1.41
VPS53-202ENST00000389040 CXCL6P80162 114 aa6.26□□□□□ -1.41
VPS53-202ENST00000389040 KRTAP11-1Q8IUC1 163 aa6.25□□□□□ -1.41
VPS53-202ENST00000389040 PSORS1C2Q9UIG4 136 aa6.25□□□□□ -1.41
VPS53-202ENST00000389040 C1orf137Q5JT78 98 aa6.24□□□□□ -1.41
VPS53-202ENST00000389040 SMIM29Q86T20 159 aa6.24□□□□□ -1.41
VPS53-202ENST00000389040 HIGD2AQ9BW72 106 aa6.24□□□□□ -1.41
VPS53-202ENST00000389040 H0Y9J4 135 aa6.23□□□□□ -1.41
VPS53-202ENST00000389040 KRTAP17-1Q9BYP8 105 aa6.23□□□□□ -1.41
VPS53-202ENST00000389040 A0A1B0GW54 56 aa6.23□□□□□ -1.41
VPS53-202ENST00000389040 SPINK6Q6UWN8 80 aa6.23□□□□□ -1.41
VPS53-202ENST00000389040 FAT1Q14517 4588 aa6.22□□□□□ -1.41
VPS53-202ENST00000389040 A0A1W2PNM2 257 aa6.22□□□□□ -1.41
VPS53-202ENST00000389040 F8WEM9 126 aa6.22□□□□□ -1.41
VPS53-202ENST00000389040 UQCRQO14949 82 aa6.22□□□□□ -1.41
VPS53-202ENST00000389040 VPS13BQ7Z7G8 4022 aa6.21□□□□□ -1.41
VPS53-202ENST00000389040 COX7CP15954 63 aa6.21□□□□□ -1.41
VPS53-202ENST00000389040 NREPQ16612 68 aa6.21□□□□□ -1.41
VPS53-202ENST00000389040 Q8NBF4 154 aa6.21□□□□□ -1.41
VPS53-202ENST00000389040 SRRM2Q9UQ35 2752 aaKnown RBP6.21□□□□□ -1.42
VPS53-202ENST00000389040 BCE1O60756 84 aa6.21□□□□□ -1.42
VPS53-202ENST00000389040 IGLV7-43P04211 117 aa6.21□□□□□ -1.42
VPS53-202ENST00000389040 UBE2AP49459 152 aa6.21□□□□□ -1.42
VPS53-202ENST00000389040 KRTAP4-5Q9BYR2 181 aa6.2□□□□□ -1.42
VPS53-202ENST00000389040 SERP2Q8N6R1 65 aa6.19□□□□□ -1.42
VPS53-202ENST00000389040 SPRR4Q96PI1 79 aa6.19□□□□□ -1.42
VPS53-202ENST00000389040 ZNF861PO60384 105 aa6.19□□□□□ -1.42
VPS53-202ENST00000389040 IGLV8-61A0A075B6I0 122 aa6.18□□□□□ -1.42
VPS53-202ENST00000389040 C9orf153Q5TBE3 101 aa6.18□□□□□ -1.42
VPS53-202ENST00000389040 BPY2O14599 106 aa6.17□□□□□ -1.42
VPS53-202ENST00000389040 SPRR1BP22528 89 aa6.17□□□□□ -1.42
VPS53-202ENST00000389040 KRTAP13-1Q8IUC0 172 aa6.17□□□□□ -1.42
VPS53-202ENST00000389040 CRYGAP11844 174 aa6.17□□□□□ -1.42
VPS53-202ENST00000389040 IGFL1Q6UW32 110 aa6.17□□□□□ -1.42
VPS53-202ENST00000389040 OXTP01178 125 aa6.16□□□□□ -1.42
VPS53-202ENST00000389040 Q8N9L7 120 aa6.15□□□□□ -1.43
VPS53-202ENST00000389040 A0A0G2JQZ4 141 aa6.14□□□□□ -1.43
VPS53-202ENST00000389040 IGKV4-1P06312 121 aa6.14□□□□□ -1.43
VPS53-202ENST00000389040 SS18L2Q9UHA2 77 aa6.14□□□□□ -1.43
VPS53-202ENST00000389040 KRTAP29-1A8MX34 341 aaPredicted RBP6.13□□□□□ -1.43
VPS53-202ENST00000389040 SMIM20Q8N5G0 67 aa6.13□□□□□ -1.43
VPS53-202ENST00000389040 TRAV7A0A075B6U4 112 aa6.11□□□□□ -1.43
VPS53-202ENST00000389040 A0A087WSZ3 146 aa6.09□□□□□ -1.43
VPS53-202ENST00000389040 DSCR10P59022 87 aa6.09□□□□□ -1.44
VPS53-202ENST00000389040 CYSTM1Q9H1C7 97 aa6.09□□□□□ -1.44
VPS53-202ENST00000389040 ZNF706Q9Y5V0 76 aaPredicted RBP6.09□□□□□ -1.44
VPS53-202ENST00000389040 PCLOQ9Y6V0 5065 aa6.08□□□□□ -1.44
VPS53-202ENST00000389040 LINC00483Q53H64 154 aa6.08□□□□□ -1.44
VPS53-202ENST00000389040 ABCA13Q86UQ4 5058 aa6.07□□□□□ -1.44
VPS53-202ENST00000389040 FAM229BQ4G0N7 80 aa6.07□□□□□ -1.44
VPS53-202ENST00000389040 K7EQZ3 153 aa6.06□□□□□ -1.44
VPS53-202ENST00000389040 C20orf197Q8N268 126 aa6.06□□□□□ -1.44
VPS53-202ENST00000389040 IGLV9-49A0A0B4J1Y8 123 aa6.05□□□□□ -1.44
VPS53-202ENST00000389040 KRTAP1-4P0C5Y4 121 aa6.05□□□□□ -1.44
VPS53-202ENST00000389040 PKHD1L1Q86WI1 4243 aa6.04□□□□□ -1.44
VPS53-202ENST00000389040 DEFB116Q30KQ4 102 aa6.04□□□□□ -1.44
VPS53-202ENST00000389040 KRTAP10-8P60410 259 aa6.03□□□□□ -1.44
VPS53-202ENST00000389040 MYCBP2O75592 4640 aa6.03□□□□□ -1.44
VPS53-202ENST00000389040 TMEM258P61165 79 aa6.03□□□□□ -1.44
VPS53-202ENST00000389040 OCR1Q9BZK8 76 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms