RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MAST4O15021 2626 aa5.39□□□□□ -1.55
LIG3-202ENST00000378526 FLNBO75369 2602 aaKnown RBP5.39□□□□□ -1.55
LIG3-202ENST00000378526 CEP350Q5VT06 3117 aa5.38□□□□□ -1.55
LIG3-202ENST00000378526 SMR3AQ99954 134 aa5.38□□□□□ -1.55
LIG3-202ENST00000378526 A0A096LNT2 108 aa5.38□□□□□ -1.55
LIG3-202ENST00000378526 ATRQ13535 2644 aa5.38□□□□□ -1.55
LIG3-202ENST00000378526 Q8NDZ9 215 aa5.37□□□□□ -1.55
LIG3-202ENST00000378526 MGAM2Q2M2H8 2515 aa5.37□□□□□ -1.55
LIG3-202ENST00000378526 M0QZ58 72 aa5.37□□□□□ -1.55
LIG3-202ENST00000378526 STAB1Q9NY15 2570 aa5.34□□□□□ -1.55
LIG3-202ENST00000378526 PANO1I0J062 215 aa5.34□□□□□ -1.55
LIG3-202ENST00000378526 M0R2T5 61 aa5.34□□□□□ -1.55
LIG3-202ENST00000378526 NOTCH1P46531 2555 aa5.32□□□□□ -1.56
LIG3-202ENST00000378526 WWC2-AS2Q96NR7 200 aa5.32□□□□□ -1.56
LIG3-202ENST00000378526 SPRR1AP35321 89 aa5.31□□□□□ -1.56
LIG3-202ENST00000378526 PP632Q6XCG6 107 aa5.3□□□□□ -1.56
LIG3-202ENST00000378526 SPRR1BP22528 89 aa5.3□□□□□ -1.56
LIG3-202ENST00000378526 A0A1W2PPR1 153 aa5.29□□□□□ -1.56
LIG3-202ENST00000378526 ADM2Q7Z4H4 148 aa5.28□□□□□ -1.56
LIG3-202ENST00000378526 CASC10Q5T4H9 136 aa5.28□□□□□ -1.56
LIG3-202ENST00000378526 A8MUU9 505 aa5.28□□□□□ -1.56
LIG3-202ENST00000378526 CFAP46Q8IYW2 2715 aa5.27□□□□□ -1.57
LIG3-202ENST00000378526 STAB2Q8WWQ8 2551 aa5.27□□□□□ -1.57
LIG3-202ENST00000378526 C5orf42Q9H799 3197 aa5.27□□□□□ -1.57
LIG3-202ENST00000378526 NOTCH2NLQ7Z3S9 236 aa5.26□□□□□ -1.57
LIG3-202ENST00000378526 KRTAP10-9P60411 292 aa5.26□□□□□ -1.57
LIG3-202ENST00000378526 KRTAP26-1Q6PEX3 210 aa5.26□□□□□ -1.57
LIG3-202ENST00000378526 LAMA2P24043 3122 aaKnown RBP5.25□□□□□ -1.57
LIG3-202ENST00000378526 MAP1AP78559 2803 aaPredicted RBP5.23□□□□□ -1.57
LIG3-202ENST00000378526 C10orf95Q9H7T3 257 aa5.23□□□□□ -1.57
LIG3-202ENST00000378526 CHD6Q8TD26 2715 aa5.22□□□□□ -1.57
LIG3-202ENST00000378526 LCE6AA0A183 80 aa5.22□□□□□ -1.57
LIG3-202ENST00000378526 KRTAP11-1Q8IUC1 163 aa5.22□□□□□ -1.57
LIG3-202ENST00000378526 KRTAP29-1A8MX34 341 aaPredicted RBP5.22□□□□□ -1.57
LIG3-202ENST00000378526 C10orf142B7Z368 130 aa5.21□□□□□ -1.58
LIG3-202ENST00000378526 A0A0C4DFX4 3053 aa5.2□□□□□ -1.58
LIG3-202ENST00000378526 CFAP54Q96N23 3096 aa5.2□□□□□ -1.58
LIG3-202ENST00000378526 SMR3BP02814 79 aaPredicted RBP5.2□□□□□ -1.58
LIG3-202ENST00000378526 FLNAP21333 2647 aaKnown RBP5.19□□□□□ -1.58
LIG3-202ENST00000378526 HELZ2Q9BYK8 2649 aaKnown RBP5.19□□□□□ -1.58
LIG3-202ENST00000378526 PLAC8Q9NZF1 115 aa5.18□□□□□ -1.58
LIG3-202ENST00000378526 TNP1P09430 55 aa5.17□□□□□ -1.58
LIG3-202ENST00000378526 ITPR3Q14573 2671 aa5.15□□□□□ -1.58
LIG3-202ENST00000378526 KMT2BQ9UMN6 2715 aaPredicted RBP5.14□□□□□ -1.59
LIG3-202ENST00000378526 KRTAP10-11P60412 298 aa5.13□□□□□ -1.59
LIG3-202ENST00000378526 KRTAP4-16G5E9R7 235 aaPredicted RBP5.12□□□□□ -1.59
LIG3-202ENST00000378526 K7EIL1 84 aa5.12□□□□□ -1.59
LIG3-202ENST00000378526 A8MU10 97 aa5.12□□□□□ -1.59
LIG3-202ENST00000378526 TEX15Q9BXT5 2789 aa5.12□□□□□ -1.59
LIG3-202ENST00000378526 BAHCC1Q9P281 2608 aa5.11□□□□□ -1.59
LIG3-202ENST00000378526 KRTAP24-1Q3LI83 254 aa5.11□□□□□ -1.59
LIG3-202ENST00000378526 UNC79Q9P2D8 2635 aa5.1□□□□□ -1.59
LIG3-202ENST00000378526 NSD1Q96L73 2696 aaPredicted RBP5.1□□□□□ -1.59
LIG3-202ENST00000378526 GCN1Q92616 2671 aaKnown RBP5.09□□□□□ -1.6
LIG3-202ENST00000378526 P0C880 135 aa5.07□□□□□ -1.6
LIG3-202ENST00000378526 COL6A5A8TX70 2615 aa5.06□□□□□ -1.6
LIG3-202ENST00000378526 SETXQ7Z333 2677 aaKnown RBP5.04□□□□□ -1.6
LIG3-202ENST00000378526 TEP1Q99973 2627 aaKnown RBP5.04□□□□□ -1.6
LIG3-202ENST00000378526 VPS13AQ96RL7 3174 aa5.04□□□□□ -1.6
LIG3-202ENST00000378526 APCP25054 2843 aa5.03□□□□□ -1.6
LIG3-202ENST00000378526 RPS29P62273 56 aaKnown RBP5.03□□□□□ -1.6
LIG3-202ENST00000378526 TRIOO75962 3097 aa5.02□□□□□ -1.61
LIG3-202ENST00000378526 RANBP2P49792 3224 aaKnown RBP5.02□□□□□ -1.61
LIG3-202ENST00000378526 XIRP2A4UGR9 3374 aa5.01□□□□□ -1.61
LIG3-202ENST00000378526 IGSF10Q6WRI0 2623 aa5□□□□□ -1.61
LIG3-202ENST00000378526 ZNF292O60281 2723 aa4.99□□□□□ -1.61
LIG3-202ENST00000378526 PRUNE2Q8WUY3 3088 aa4.98□□□□□ -1.61
LIG3-202ENST00000378526 CHD7Q9P2D1 2997 aa4.98□□□□□ -1.61
LIG3-202ENST00000378526 MGAQ8IWI9 3026 aa4.98□□□□□ -1.61
LIG3-202ENST00000378526 MKI67P46013 3256 aaKnown RBP4.98□□□□□ -1.61
LIG3-202ENST00000378526 LAMA3Q16787 3333 aa4.97□□□□□ -1.61
LIG3-202ENST00000378526 TRANK1O15050 2925 aa4.96□□□□□ -1.62
LIG3-202ENST00000378526 BRCA2P51587 3418 aa4.95□□□□□ -1.62
LIG3-202ENST00000378526 UTP20O75691 2785 aaKnown RBP4.95□□□□□ -1.62
LIG3-202ENST00000378526 ITPR1Q14643 2758 aa4.93□□□□□ -1.62
LIG3-202ENST00000378526 DSPP15924 2871 aaKnown RBP4.93□□□□□ -1.62
LIG3-202ENST00000378526 WDFY4Q6ZS81 3184 aa4.92□□□□□ -1.62
LIG3-202ENST00000378526 KRTAP10-3P60369 221 aa4.9□□□□□ -1.63
LIG3-202ENST00000378526 FRYLO94915 3013 aa4.89□□□□□ -1.63
LIG3-202ENST00000378526 ITPR2Q14571 2701 aa4.89□□□□□ -1.63
LIG3-202ENST00000378526 FRYQ5TBA9 3013 aa4.89□□□□□ -1.63
LIG3-202ENST00000378526 UBR5O95071 2799 aaPredicted RBP4.88□□□□□ -1.63
LIG3-202ENST00000378526 H0YAA0 97 aa4.87□□□□□ -1.63
LIG3-202ENST00000378526 FREM2Q5SZK8 3169 aa4.86□□□□□ -1.63
LIG3-202ENST00000378526 CELSR3Q9NYQ7 3312 aa4.85□□□□□ -1.63
LIG3-202ENST00000378526 NBEAL2Q6ZNJ1 2754 aa4.81□□□□□ -1.64
LIG3-202ENST00000378526 HTTP42858 3142 aa4.81□□□□□ -1.64
LIG3-202ENST00000378526 INE1O15225 51 aa4.8□□□□□ -1.64
LIG3-202ENST00000378526 Q5VSD8 79 aa4.8□□□□□ -1.64
LIG3-202ENST00000378526 KRTAP10-8P60410 259 aa4.79□□□□□ -1.64
LIG3-202ENST00000378526 LRBAP50851 2863 aa4.78□□□□□ -1.64
LIG3-202ENST00000378526 UNC80Q8N2C7 3258 aa4.78□□□□□ -1.64
LIG3-202ENST00000378526 LAMA1P25391 3075 aa4.78□□□□□ -1.64
LIG3-202ENST00000378526 Q6ZRN7 208 aaPredicted RBP4.77□□□□□ -1.65
LIG3-202ENST00000378526 KALRNO60229 2985 aa4.77□□□□□ -1.65
LIG3-202ENST00000378526 CHD9Q3L8U1 2897 aa4.77□□□□□ -1.65
LIG3-202ENST00000378526 CDH23Q9H251 3354 aa4.76□□□□□ -1.65
LIG3-202ENST00000378526 DNAH14Q0VDD8 3507 aa4.74□□□□□ -1.65
LIG3-202ENST00000378526 DMXL2Q8TDJ6 3036 aa4.74□□□□□ -1.65
LIG3-202ENST00000378526 FLNCQ14315 2725 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms