RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 H3BNG1 76 aa10.05□□□□□ -0.8
CKAP4-201ENST00000378026 NOTCH1P46531 2555 aa10.04□□□□□ -0.8
CKAP4-201ENST00000378026 SPTSSBQ8NFR3 76 aa10.04□□□□□ -0.8
CKAP4-201ENST00000378026 PRR15LQ9BU68 103 aa10.04□□□□□ -0.8
CKAP4-201ENST00000378026 TLX1NBP0CAT3 122 aa10.04□□□□□ -0.8
CKAP4-201ENST00000378026 PLA2G2DQ9UNK4 145 aa10.04□□□□□ -0.8
CKAP4-201ENST00000378026 MAST4O15021 2626 aa10.03□□□□□ -0.8
CKAP4-201ENST00000378026 INAFM1C9JVW0 142 aa10.03□□□□□ -0.8
CKAP4-201ENST00000378026 IGKV2-24A0A0C4DH68 120 aa10.02□□□□□ -0.81
CKAP4-201ENST00000378026 FBN1P35555 2871 aaKnown RBP10.02□□□□□ -0.81
CKAP4-201ENST00000378026 NSD1Q96L73 2696 aaPredicted RBP10.02□□□□□ -0.81
CKAP4-201ENST00000378026 CASC2Q6XLA1 102 aa10.02□□□□□ -0.81
CKAP4-201ENST00000378026 A0A096LNI7 61 aa10.01□□□□□ -0.81
CKAP4-201ENST00000378026 IGLV5-37A0A075B6J1 123 aa10□□□□□ -0.81
CKAP4-201ENST00000378026 Q8N9P0 234 aaPredicted RBP10□□□□□ -0.81
CKAP4-201ENST00000378026 C11orf45Q8TAV5 145 aa9.98□□□□□ -0.81
CKAP4-201ENST00000378026 UBE2AP49459 152 aa9.97□□□□□ -0.81
CKAP4-201ENST00000378026 KRTAP29-1A8MX34 341 aaPredicted RBP9.97□□□□□ -0.81
CKAP4-201ENST00000378026 C16orf90A8MZG2 172 aa9.97□□□□□ -0.81
CKAP4-201ENST00000378026 DNAH10OSP0CZ25 163 aa9.96□□□□□ -0.81
CKAP4-201ENST00000378026 CSMD3Q7Z407 3707 aa9.96□□□□□ -0.81
CKAP4-201ENST00000378026 ANK2Q01484 3957 aa9.96□□□□□ -0.82
CKAP4-201ENST00000378026 CNBPP62633 177 aaKnown RBP9.96□□□□□ -0.82
CKAP4-201ENST00000378026 STAB1Q9NY15 2570 aa9.96□□□□□ -0.82
CKAP4-201ENST00000378026 COL6A5A8TX70 2615 aa9.95□□□□□ -0.82
CKAP4-201ENST00000378026 KRTAP10-11P60412 298 aa9.95□□□□□ -0.82
CKAP4-201ENST00000378026 H0Y9J4 135 aa9.94□□□□□ -0.82
CKAP4-201ENST00000378026 LINC00588Q9Y4M8 146 aa9.94□□□□□ -0.82
CKAP4-201ENST00000378026 PCOTHQ58A44 107 aa9.93□□□□□ -0.82
CKAP4-201ENST00000378026 A6NED7 52 aa9.93□□□□□ -0.82
CKAP4-201ENST00000378026 LIMD2Q9BT23 127 aa9.93□□□□□ -0.82
CKAP4-201ENST00000378026 NBEAL1Q6ZS30 2694 aa9.91□□□□□ -0.82
CKAP4-201ENST00000378026 SPANXA2-OT1Q8N9U9 137 aa9.91□□□□□ -0.82
CKAP4-201ENST00000378026 COA5Q86WW8 74 aa9.9□□□□□ -0.82
CKAP4-201ENST00000378026 LCA10Q71F78 164 aa9.9□□□□□ -0.83
CKAP4-201ENST00000378026 A8MWP4 228 aa9.87□□□□□ -0.83
CKAP4-201ENST00000378026 C9orf163Q8N9P6 203 aa9.87□□□□□ -0.83
CKAP4-201ENST00000378026 CD164Q04900 197 aa9.86□□□□□ -0.83
CKAP4-201ENST00000378026 SPAG11AQ6PDA7 123 aa9.85□□□□□ -0.83
CKAP4-201ENST00000378026 KRTAP11-1Q8IUC1 163 aa9.85□□□□□ -0.83
CKAP4-201ENST00000378026 IGLV8-61A0A075B6I0 122 aa9.84□□□□□ -0.83
CKAP4-201ENST00000378026 H3BPC8 53 aa9.84□□□□□ -0.83
CKAP4-201ENST00000378026 PHF5AQ7RTV0 110 aaKnown RBP9.84□□□□□ -0.83
CKAP4-201ENST00000378026 CHTF8P0CG12 524 aa9.84□□□□□ -0.83
CKAP4-201ENST00000378026 LINC00472Q9H8W2 130 aa9.84□□□□□ -0.83
CKAP4-201ENST00000378026 COL7A1Q02388 2944 aa9.83□□□□□ -0.84
CKAP4-201ENST00000378026 KTN1-AS1Q86SY8 53 aa9.82□□□□□ -0.84
CKAP4-201ENST00000378026 DNAH10Q8IVF4 4471 aa9.82□□□□□ -0.84
CKAP4-201ENST00000378026 Q75L30 129 aa9.8□□□□□ -0.84
CKAP4-201ENST00000378026 MMP24-AS1A0A0U1RRL7 71 aa9.8□□□□□ -0.84
CKAP4-201ENST00000378026 RBM12B-AS1Q9P1G2 102 aa9.79□□□□□ -0.84
CKAP4-201ENST00000378026 IGLV7-46A0A075B6I9 117 aa9.79□□□□□ -0.84
CKAP4-201ENST00000378026 NDUFS5O43920 106 aa9.79□□□□□ -0.84
CKAP4-201ENST00000378026 ATP11AUNQ6ZP68 121 aa9.78□□□□□ -0.84
CKAP4-201ENST00000378026 KMT2BQ9UMN6 2715 aaPredicted RBP9.77□□□□□ -0.85
CKAP4-201ENST00000378026 TENM2Q9NT68 2774 aa9.76□□□□□ -0.85
CKAP4-201ENST00000378026 LOC101927531A0A1B0GV80 90 aa9.76□□□□□ -0.85
CKAP4-201ENST00000378026 DNAH1Q9P2D7 4330 aa9.75□□□□□ -0.85
CKAP4-201ENST00000378026 IGLV9-49A0A0B4J1Y8 123 aa9.74□□□□□ -0.85
CKAP4-201ENST00000378026 LYSTQ99698 3801 aa9.73□□□□□ -0.85
CKAP4-201ENST00000378026 KRTAP1-5Q9BYS1 174 aa9.72□□□□□ -0.85
CKAP4-201ENST00000378026 A6NN06 94 aa9.71□□□□□ -0.85
CKAP4-201ENST00000378026 CDC42SE1Q9NRR8 79 aa9.71□□□□□ -0.85
CKAP4-201ENST00000378026 SPINK7P58062 85 aa9.71□□□□□ -0.86
CKAP4-201ENST00000378026 IGHV6-1A0A0B4J1U7 121 aa9.7□□□□□ -0.86
CKAP4-201ENST00000378026 J3QKU1 62 aa9.7□□□□□ -0.86
CKAP4-201ENST00000378026 MOBPQ13875 183 aa9.69□□□□□ -0.86
CKAP4-201ENST00000378026 SPRR1BP22528 89 aa9.67□□□□□ -0.86
CKAP4-201ENST00000378026 HRES1P13985 223 aa9.67□□□□□ -0.86
CKAP4-201ENST00000378026 LINC01558Q9Y6Z2 57 aa9.67□□□□□ -0.86
CKAP4-201ENST00000378026 C8orf17Q9NRJ1 99 aa9.65□□□□□ -0.86
CKAP4-201ENST00000378026 STAB2Q8WWQ8 2551 aa9.64□□□□□ -0.87
CKAP4-201ENST00000378026 Q96NJ1 140 aa9.64□□□□□ -0.87
CKAP4-201ENST00000378026 TP53AIP1Q9HCN2 124 aa9.63□□□□□ -0.87
CKAP4-201ENST00000378026 PRR26Q8N8Z3 221 aa9.62□□□□□ -0.87
CKAP4-201ENST00000378026 K7EIL1 84 aa9.62□□□□□ -0.87
CKAP4-201ENST00000378026 PANO1I0J062 215 aa9.61□□□□□ -0.87
CKAP4-201ENST00000378026 MGAM2Q2M2H8 2515 aa9.61□□□□□ -0.87
CKAP4-201ENST00000378026 DNAH9Q9NYC9 4486 aa9.6□□□□□ -0.87
CKAP4-201ENST00000378026 A0A087X002 238 aa9.6□□□□□ -0.87
CKAP4-201ENST00000378026 NOTCH2NLQ7Z3S9 236 aa9.6□□□□□ -0.87
CKAP4-201ENST00000378026 C7orf65Q6ZTY9 151 aa9.6□□□□□ -0.87
CKAP4-201ENST00000378026 CDK2AP2O75956 126 aa9.59□□□□□ -0.87
CKAP4-201ENST00000378026 UBE2DNLQ8IWF7 75 aa9.59□□□□□ -0.87
CKAP4-201ENST00000378026 PLAC8Q9NZF1 115 aa9.59□□□□□ -0.87
CKAP4-201ENST00000378026 Q6ZR54 194 aa9.58□□□□□ -0.88
CKAP4-201ENST00000378026 ANAPC11Q9NYG5 84 aa9.58□□□□□ -0.88
CKAP4-201ENST00000378026 A0A1B0GVX0 72 aa9.56□□□□□ -0.88
CKAP4-201ENST00000378026 ASB16-AS1Q495Z4 193 aa9.55□□□□□ -0.88
CKAP4-201ENST00000378026 CMYA5Q8N3K9 4069 aa9.55□□□□□ -0.88
CKAP4-201ENST00000378026 MRPL34Q9BQ48 92 aaKnown RBP9.55□□□□□ -0.88
CKAP4-201ENST00000378026 SPINK6Q6UWN8 80 aa9.54□□□□□ -0.88
CKAP4-201ENST00000378026 HUWE1Q7Z6Z7 4374 aaKnown RBP9.52□□□□□ -0.89
CKAP4-201ENST00000378026 PRAC1Q96KF2 57 aa9.52□□□□□ -0.89
CKAP4-201ENST00000378026 KRTAP24-1Q3LI83 254 aa9.51□□□□□ -0.89
CKAP4-201ENST00000378026 Q5W150 140 aa9.5□□□□□ -0.89
CKAP4-201ENST00000378026 KRTAP13-1Q8IUC0 172 aa9.49□□□□□ -0.89
CKAP4-201ENST00000378026 C14orf177Q52M58 125 aa9.48□□□□□ -0.89
CKAP4-201ENST00000378026 MDFIQ99750 246 aa9.47□□□□□ -0.89
CKAP4-201ENST00000378026 LINC00313P59037 77 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms