RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 FRYQ5TBA9 3013 aa6.95□□□□□ -1.3
RTN3-206ENST00000377819 H7BZZ5 65 aa6.95□□□□□ -1.3
RTN3-206ENST00000377819 HELZ2Q9BYK8 2649 aaKnown RBP6.94□□□□□ -1.3
RTN3-206ENST00000377819 ANKRD17O75179 2603 aaKnown RBP6.94□□□□□ -1.3
RTN3-206ENST00000377819 R4GN34 69 aa6.94□□□□□ -1.3
RTN3-206ENST00000377819 PSORS1C2Q9UIG4 136 aa6.94□□□□□ -1.3
RTN3-206ENST00000377819 SPRR4Q96PI1 79 aa6.93□□□□□ -1.3
RTN3-206ENST00000377819 ASPMQ8IZT6 3477 aa6.92□□□□□ -1.3
RTN3-206ENST00000377819 PLAC4Q8WY50 150 aa6.91□□□□□ -1.3
RTN3-206ENST00000377819 PTPRBP23467 1997 aa6.91□□□□□ -1.3
RTN3-206ENST00000377819 NOTCH1P46531 2555 aa6.91□□□□□ -1.3
RTN3-206ENST00000377819 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.89□□□□□ -1.31
RTN3-206ENST00000377819 A0A0G2JQZ4 141 aa6.88□□□□□ -1.31
RTN3-206ENST00000377819 A0A1W2PNN7 141 aa6.88□□□□□ -1.31
RTN3-206ENST00000377819 H1FX-AS1Q4G0G2 97 aa6.88□□□□□ -1.31
RTN3-206ENST00000377819 PRR34Q9NV39 138 aa6.88□□□□□ -1.31
RTN3-206ENST00000377819 ITPR3Q14573 2671 aa6.87□□□□□ -1.31
RTN3-206ENST00000377819 K7EIL1 84 aa6.87□□□□□ -1.31
RTN3-206ENST00000377819 LINC00612Q8N6U2 182 aa6.86□□□□□ -1.31
RTN3-206ENST00000377819 CFAP47Q6ZTR5 3102 aa6.86□□□□□ -1.31
RTN3-206ENST00000377819 LITAFQ99732 161 aa6.85□□□□□ -1.31
RTN3-206ENST00000377819 H3BS24 57 aa6.85□□□□□ -1.31
RTN3-206ENST00000377819 A0A1W2PNM2 257 aa6.83□□□□□ -1.32
RTN3-206ENST00000377819 DMXL1Q9Y485 3027 aa6.83□□□□□ -1.32
RTN3-206ENST00000377819 SEC61BP60468 96 aaKnown RBP6.82□□□□□ -1.32
RTN3-206ENST00000377819 TNP2Q05952 138 aa6.82□□□□□ -1.32
RTN3-206ENST00000377819 RAI1Q7Z5J4 1906 aaPredicted RBP6.82□□□□□ -1.32
RTN3-206ENST00000377819 DCHS1Q96JQ0 3298 aa6.82□□□□□ -1.32
RTN3-206ENST00000377819 UNC79Q9P2D8 2635 aa6.81□□□□□ -1.32
RTN3-206ENST00000377819 NBEAL1Q6ZS30 2694 aa6.81□□□□□ -1.32
RTN3-206ENST00000377819 CELSR3Q9NYQ7 3312 aa6.8□□□□□ -1.32
RTN3-206ENST00000377819 CNBPP62633 177 aaKnown RBP6.8□□□□□ -1.32
RTN3-206ENST00000377819 S4R3F8 94 aa6.79□□□□□ -1.32
RTN3-206ENST00000377819 CR1P17927 2039 aa6.79□□□□□ -1.32
RTN3-206ENST00000377819 C19orf73Q9NVV2 129 aa6.76□□□□□ -1.33
RTN3-206ENST00000377819 LOC400499M0QZD8 3231 aa6.76□□□□□ -1.33
RTN3-206ENST00000377819 RPL37P61927 97 aaKnown RBP6.75□□□□□ -1.33
RTN3-206ENST00000377819 LAMA5O15230 3695 aa6.75□□□□□ -1.33
RTN3-206ENST00000377819 ZCCHC13Q8WW36 166 aaKnown RBP6.75□□□□□ -1.33
RTN3-206ENST00000377819 A0A0C4DFX4 3053 aa6.74□□□□□ -1.33
RTN3-206ENST00000377819 FAM229BQ4G0N7 80 aa6.74□□□□□ -1.33
RTN3-206ENST00000377819 Q75L30 129 aa6.74□□□□□ -1.33
RTN3-206ENST00000377819 Q8N9P0 234 aaPredicted RBP6.72□□□□□ -1.33
RTN3-206ENST00000377819 LINC01558Q9Y6Z2 57 aa6.72□□□□□ -1.33
RTN3-206ENST00000377819 CFAP46Q8IYW2 2715 aa6.71□□□□□ -1.33
RTN3-206ENST00000377819 AKAP13Q12802 2813 aa6.71□□□□□ -1.34
RTN3-206ENST00000377819 PRAC1Q96KF2 57 aa6.71□□□□□ -1.34
RTN3-206ENST00000377819 EIF4EBP3O60516 100 aaPredicted RBP6.7□□□□□ -1.34
RTN3-206ENST00000377819 ZNF292O60281 2723 aa6.7□□□□□ -1.34
RTN3-206ENST00000377819 M0QZ58 72 aa6.7□□□□□ -1.34
RTN3-206ENST00000377819 KRTAP10-11P60412 298 aa6.69□□□□□ -1.34
RTN3-206ENST00000377819 OCR1Q9BZK8 76 aa6.69□□□□□ -1.34
RTN3-206ENST00000377819 TEP1Q99973 2627 aaKnown RBP6.68□□□□□ -1.34
RTN3-206ENST00000377819 ROMO1P60602 79 aa6.67□□□□□ -1.34
RTN3-206ENST00000377819 SMG1Q96Q15 3661 aaKnown RBP6.66□□□□□ -1.34
RTN3-206ENST00000377819 KALRNO60229 2985 aa6.65□□□□□ -1.35
RTN3-206ENST00000377819 KRTAP16-1A8MUX0 517 aa6.65□□□□□ -1.35
RTN3-206ENST00000377819 IGSF10Q6WRI0 2623 aa6.65□□□□□ -1.35
RTN3-206ENST00000377819 CASC10Q5T4H9 136 aa6.64□□□□□ -1.35
RTN3-206ENST00000377819 GIG44P09565 113 aaPredicted RBP6.63□□□□□ -1.35
RTN3-206ENST00000377819 KLK9Q2XQG4 91 aa6.61□□□□□ -1.35
RTN3-206ENST00000377819 ATMQ13315 3056 aa6.58□□□□□ -1.36
RTN3-206ENST00000377819 VPS13CQ709C8 3753 aa6.57□□□□□ -1.36
RTN3-206ENST00000377819 Q5VSD8 79 aa6.57□□□□□ -1.36
RTN3-206ENST00000377819 Q5W150 140 aa6.56□□□□□ -1.36
RTN3-206ENST00000377819 ZFHX3Q15911 3703 aa6.56□□□□□ -1.36
RTN3-206ENST00000377819 MMP24-AS1A0A0U1RRL7 71 aa6.56□□□□□ -1.36
RTN3-206ENST00000377819 FP248Q71RG6 208 aaPredicted RBP6.53□□□□□ -1.36
RTN3-206ENST00000377819 C20orf166-AS1Q96NR2 134 aa6.52□□□□□ -1.37
RTN3-206ENST00000377819 KMT2BQ9UMN6 2715 aaPredicted RBP6.52□□□□□ -1.37
RTN3-206ENST00000377819 PLAC8Q9NZF1 115 aa6.51□□□□□ -1.37
RTN3-206ENST00000377819 DCHS2Q6V1P9 2916 aa6.5□□□□□ -1.37
RTN3-206ENST00000377819 ITPR1Q14643 2758 aa6.5□□□□□ -1.37
RTN3-206ENST00000377819 AKAP9Q99996 3911 aa6.49□□□□□ -1.37
RTN3-206ENST00000377819 RELNP78509 3460 aa6.48□□□□□ -1.37
RTN3-206ENST00000377819 Q8NDZ9 215 aa6.48□□□□□ -1.37
RTN3-206ENST00000377819 DMXL2Q8TDJ6 3036 aa6.48□□□□□ -1.37
RTN3-206ENST00000377819 Q5VV11 94 aa6.48□□□□□ -1.37
RTN3-206ENST00000377819 CENPEQ02224 2701 aa6.47□□□□□ -1.37
RTN3-206ENST00000377819 OXTP01178 125 aa6.47□□□□□ -1.37
RTN3-206ENST00000377819 NBEAQ8NFP9 2946 aa6.46□□□□□ -1.38
RTN3-206ENST00000377819 ADM2Q7Z4H4 148 aa6.46□□□□□ -1.38
RTN3-206ENST00000377819 HRNRQ86YZ3 2850 aaPredicted RBP6.45□□□□□ -1.38
RTN3-206ENST00000377819 ZZEF1O43149 2961 aa6.45□□□□□ -1.38
RTN3-206ENST00000377819 ASB16-AS1Q495Z4 193 aa6.44□□□□□ -1.38
RTN3-206ENST00000377819 BOD1L1Q8NFC6 3051 aa6.44□□□□□ -1.38
RTN3-206ENST00000377819 FLNAP21333 2647 aaKnown RBP6.43□□□□□ -1.38
RTN3-206ENST00000377819 SPATA8Q6RVD6 105 aa6.42□□□□□ -1.38
RTN3-206ENST00000377819 DSPP15924 2871 aaKnown RBP6.42□□□□□ -1.38
RTN3-206ENST00000377819 SPRR1BP22528 89 aa6.42□□□□□ -1.38
RTN3-206ENST00000377819 KRTAP10-3P60369 221 aa6.42□□□□□ -1.38
RTN3-206ENST00000377819 LINC00472Q9H8W2 130 aa6.42□□□□□ -1.38
RTN3-206ENST00000377819 PANO1I0J062 215 aa6.41□□□□□ -1.38
RTN3-206ENST00000377819 NSD1Q96L73 2696 aaPredicted RBP6.41□□□□□ -1.38
RTN3-206ENST00000377819 TEX15Q9BXT5 2789 aa6.39□□□□□ -1.39
RTN3-206ENST00000377819 SPRR1AP35321 89 aa6.37□□□□□ -1.39
RTN3-206ENST00000377819 NBPF19A0A087WUL8 3843 aa6.36□□□□□ -1.39
RTN3-206ENST00000377819 CHD6Q8TD26 2715 aa6.35□□□□□ -1.39
RTN3-206ENST00000377819 A0A096LNT2 108 aa6.34□□□□□ -1.39
RTN3-206ENST00000377819 ZNF469Q96JG9 3925 aaPredicted RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms