RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CIRBP-AS1Q8TBR5 109 aa8.46□□□□□ -1.05
PTPRF-202ENST00000372405 LRP1BQ9NZR2 4599 aa8.44□□□□□ -1.06
PTPRF-202ENST00000372405 HAMPP81172 84 aa8.44□□□□□ -1.06
PTPRF-202ENST00000372405 SCXQ7RTU7 201 aa8.44□□□□□ -1.06
PTPRF-202ENST00000372405 PDE6GP18545 87 aa8.43□□□□□ -1.06
PTPRF-202ENST00000372405 TRBV7-7A0A0K0K1E9 115 aa8.42□□□□□ -1.06
PTPRF-202ENST00000372405 C1orf137Q5JT78 98 aa8.42□□□□□ -1.06
PTPRF-202ENST00000372405 SPRR1BP22528 89 aa8.41□□□□□ -1.06
PTPRF-202ENST00000372405 ANAPC13Q9BS18 74 aa8.41□□□□□ -1.06
PTPRF-202ENST00000372405 LINC00336Q6ZUF6 198 aa8.4□□□□□ -1.06
PTPRF-202ENST00000372405 LINC00643Q86TS7 51 aa8.4□□□□□ -1.06
PTPRF-202ENST00000372405 A0A1B0GVY2 172 aa8.39□□□□□ -1.07
PTPRF-202ENST00000372405 DYNC1H1Q14204 4646 aaKnown RBP8.39□□□□□ -1.07
PTPRF-202ENST00000372405 ZNF861PO60384 105 aa8.37□□□□□ -1.07
PTPRF-202ENST00000372405 IMUPQ9GZP8 106 aa8.37□□□□□ -1.07
PTPRF-202ENST00000372405 A0A0G2JQZ4 141 aa8.37□□□□□ -1.07
PTPRF-202ENST00000372405 A0A1W2PNM2 257 aa8.37□□□□□ -1.07
PTPRF-202ENST00000372405 IGLV8-61A0A075B6I0 122 aa8.35□□□□□ -1.07
PTPRF-202ENST00000372405 IGLV7-43P04211 117 aa8.35□□□□□ -1.07
PTPRF-202ENST00000372405 SPRR4Q96PI1 79 aa8.35□□□□□ -1.07
PTPRF-202ENST00000372405 F8WEM9 126 aa8.34□□□□□ -1.07
PTPRF-202ENST00000372405 IGFL1Q6UW32 110 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 VPS13BQ7Z7G8 4022 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 Q6JHZ5 121 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 Q6ZVQ6 151 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 UBL5Q9BZL1 73 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 RYR3Q15413 4870 aa8.33□□□□□ -1.08
PTPRF-202ENST00000372405 IGKV3D-7A0A0C4DH55 119 aa8.32□□□□□ -1.08
PTPRF-202ENST00000372405 LINC00483Q53H64 154 aa8.32□□□□□ -1.08
PTPRF-202ENST00000372405 Q8NBF4 154 aa8.32□□□□□ -1.08
PTPRF-202ENST00000372405 ANAPC11Q9NYG5 84 aa8.29□□□□□ -1.08
PTPRF-202ENST00000372405 APOBP04114 4563 aaKnown RBP8.29□□□□□ -1.08
PTPRF-202ENST00000372405 ZNF706Q9Y5V0 76 aaPredicted RBP8.28□□□□□ -1.08
PTPRF-202ENST00000372405 FAM236AA0A1B0GUQ0 79 aa8.27□□□□□ -1.09
PTPRF-202ENST00000372405 FAM236BA0A1B0GV22 79 aa8.27□□□□□ -1.09
PTPRF-202ENST00000372405 CRYGAP11844 174 aa8.27□□□□□ -1.09
PTPRF-202ENST00000372405 CCDC179H3BU77 68 aa8.26□□□□□ -1.09
PTPRF-202ENST00000372405 IGLV9-49A0A0B4J1Y8 123 aa8.26□□□□□ -1.09
PTPRF-202ENST00000372405 A0A1B0GW54 56 aa8.26□□□□□ -1.09
PTPRF-202ENST00000372405 ATP5EP2Q5VTU8 51 aa8.26□□□□□ -1.09
PTPRF-202ENST00000372405 NREPQ16612 68 aa8.23□□□□□ -1.09
PTPRF-202ENST00000372405 A0A087WVE0 104 aa8.22□□□□□ -1.09
PTPRF-202ENST00000372405 HIST1H4AP62805 103 aaKnown RBP8.22□□□□□ -1.09
PTPRF-202ENST00000372405 C9orf153Q5TBE3 101 aa8.22□□□□□ -1.09
PTPRF-202ENST00000372405 CXCL6P80162 114 aa8.21□□□□□ -1.09
PTPRF-202ENST00000372405 MOBPQ13875 183 aa8.21□□□□□ -1.1
PTPRF-202ENST00000372405 A0A087WSZ3 146 aa8.2□□□□□ -1.1
PTPRF-202ENST00000372405 FAT1Q14517 4588 aa8.2□□□□□ -1.1
PTPRF-202ENST00000372405 SMR3BP02814 79 aaPredicted RBP8.18□□□□□ -1.1
PTPRF-202ENST00000372405 RPL37AP61513 92 aaKnown RBP8.17□□□□□ -1.1
PTPRF-202ENST00000372405 BPY2O14599 106 aa8.15□□□□□ -1.1
PTPRF-202ENST00000372405 KRTAP1-4P0C5Y4 121 aa8.15□□□□□ -1.1
PTPRF-202ENST00000372405 Q8N9L7 120 aa8.15□□□□□ -1.1
PTPRF-202ENST00000372405 A0A087X002 238 aa8.15□□□□□ -1.11
PTPRF-202ENST00000372405 ATOX1O00244 68 aa8.15□□□□□ -1.11
PTPRF-202ENST00000372405 SS18L2Q9UHA2 77 aa8.15□□□□□ -1.11
PTPRF-202ENST00000372405 UQCRQO14949 82 aa8.13□□□□□ -1.11
PTPRF-202ENST00000372405 KRTAP10-4P60372 401 aaPredicted RBP8.13□□□□□ -1.11
PTPRF-202ENST00000372405 KRTAP13-2Q52LG2 175 aa8.13□□□□□ -1.11
PTPRF-202ENST00000372405 HRCT1Q6UXD1 115 aa8.13□□□□□ -1.11
PTPRF-202ENST00000372405 IGKV4-1P06312 121 aa8.12□□□□□ -1.11
PTPRF-202ENST00000372405 DSCR10P59022 87 aa8.12□□□□□ -1.11
PTPRF-202ENST00000372405 DEFB116Q30KQ4 102 aa8.12□□□□□ -1.11
PTPRF-202ENST00000372405 COX7CP15954 63 aa8.11□□□□□ -1.11
PTPRF-202ENST00000372405 FAM229BQ4G0N7 80 aa8.1□□□□□ -1.11
PTPRF-202ENST00000372405 LINC00472Q9H8W2 130 aa8.1□□□□□ -1.11
PTPRF-202ENST00000372405 SPINK6Q6UWN8 80 aa8.08□□□□□ -1.12
PTPRF-202ENST00000372405 SSBP3-AS1Q7Z2R9 100 aa8.08□□□□□ -1.12
PTPRF-202ENST00000372405 HSPG2P98160 4391 aa8.07□□□□□ -1.12
PTPRF-202ENST00000372405 K7EQZ3 153 aa8.07□□□□□ -1.12
PTPRF-202ENST00000372405 Q96NJ1 140 aa8.07□□□□□ -1.12
PTPRF-202ENST00000372405 SERP2Q8N6R1 65 aa8.06□□□□□ -1.12
PTPRF-202ENST00000372405 PLA2G1BP04054 148 aaKnown RBP8.04□□□□□ -1.12
PTPRF-202ENST00000372405 RYR1P21817 5038 aa8.04□□□□□ -1.12
PTPRF-202ENST00000372405 EPPK1P58107 5090 aaKnown RBP8.03□□□□□ -1.12
PTPRF-202ENST00000372405 CD164Q04900 197 aa8.02□□□□□ -1.12
PTPRF-202ENST00000372405 PKHD1L1Q86WI1 4243 aa8.01□□□□□ -1.13
PTPRF-202ENST00000372405 A8MWP4 228 aa7.99□□□□□ -1.13
PTPRF-202ENST00000372405 CDK2AP2O75956 126 aa7.99□□□□□ -1.13
PTPRF-202ENST00000372405 PRR26Q8N8Z3 221 aa7.99□□□□□ -1.13
PTPRF-202ENST00000372405 KIAA1109Q2LD37 5005 aa7.98□□□□□ -1.13
PTPRF-202ENST00000372405 PRR15Q8IV56 129 aa7.97□□□□□ -1.13
PTPRF-202ENST00000372405 KRTAP17-1Q9BYP8 105 aa7.97□□□□□ -1.13
PTPRF-202ENST00000372405 CYSTM1Q9H1C7 97 aa7.97□□□□□ -1.13
PTPRF-202ENST00000372405 J3KT08 172 aa7.97□□□□□ -1.13
PTPRF-202ENST00000372405 TYMSOSQ8TAI1 123 aa7.97□□□□□ -1.13
PTPRF-202ENST00000372405 HCG22E2RYF7 251 aa7.94□□□□□ -1.14
PTPRF-202ENST00000372405 ASB16-AS1Q495Z4 193 aa7.93□□□□□ -1.14
PTPRF-202ENST00000372405 FAM229AH3BQW9 127 aa7.93□□□□□ -1.14
PTPRF-202ENST00000372405 Q5XG85 94 aa7.93□□□□□ -1.14
PTPRF-202ENST00000372405 SMIM20Q8N5G0 67 aa7.93□□□□□ -1.14
PTPRF-202ENST00000372405 Q5VSD8 79 aa7.92□□□□□ -1.14
PTPRF-202ENST00000372405 KRTAP29-1A8MX34 341 aaPredicted RBP7.91□□□□□ -1.14
PTPRF-202ENST00000372405 WFDC13Q8IUB5 93 aa7.91□□□□□ -1.14
PTPRF-202ENST00000372405 TRAV7A0A075B6U4 112 aa7.91□□□□□ -1.14
PTPRF-202ENST00000372405 OCR1Q9BZK8 76 aa7.91□□□□□ -1.14
PTPRF-202ENST00000372405 TMEM258P61165 79 aa7.9□□□□□ -1.14
PTPRF-202ENST00000372405 MMP24-AS1A0A0U1RRL7 71 aa7.9□□□□□ -1.15
PTPRF-202ENST00000372405 LRP1Q07954 4544 aaKnown RBP7.89□□□□□ -1.15
PTPRF-202ENST00000372405 NDUFB1O75438 58 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms