RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 KRTAP10-9P60411 292 aa7.72□□□□□ -1.17
PTPN1-201ENST00000371621 LINC00313P59037 77 aa7.72□□□□□ -1.17
PTPN1-201ENST00000371621 GIG44P09565 113 aaPredicted RBP7.71□□□□□ -1.18
PTPN1-201ENST00000371621 LINC01554Q52M75 96 aa7.71□□□□□ -1.18
PTPN1-201ENST00000371621 SPINK7P58062 85 aa7.69□□□□□ -1.18
PTPN1-201ENST00000371621 H3BPC8 53 aa7.68□□□□□ -1.18
PTPN1-201ENST00000371621 IGFL1Q6UW32 110 aa7.68□□□□□ -1.18
PTPN1-201ENST00000371621 MOBPQ13875 183 aa7.68□□□□□ -1.18
PTPN1-201ENST00000371621 X6R8D5 127 aa7.68□□□□□ -1.18
PTPN1-201ENST00000371621 A0A1B0GW54 56 aa7.67□□□□□ -1.18
PTPN1-201ENST00000371621 FLNBO75369 2602 aaKnown RBP7.66□□□□□ -1.18
PTPN1-201ENST00000371621 NSD1Q96L73 2696 aaPredicted RBP7.66□□□□□ -1.18
PTPN1-201ENST00000371621 MXRA5Q9NR99 2828 aa7.66□□□□□ -1.18
PTPN1-201ENST00000371621 Q75L30 129 aa7.65□□□□□ -1.18
PTPN1-201ENST00000371621 STAB1Q9NY15 2570 aa7.65□□□□□ -1.19
PTPN1-201ENST00000371621 GVQW2A0A096LPI5 108 aaPredicted RBP7.64□□□□□ -1.19
PTPN1-201ENST00000371621 HIVEP1P15822 2718 aa7.64□□□□□ -1.19
PTPN1-201ENST00000371621 KCNQ1DNQ9H478 68 aa7.64□□□□□ -1.19
PTPN1-201ENST00000371621 ACYP2P14621 99 aa7.63□□□□□ -1.19
PTPN1-201ENST00000371621 CSNK1G2-AS1Q8NCQ2 148 aa7.63□□□□□ -1.19
PTPN1-201ENST00000371621 IGLV5-48A0A075B6I7 105 aa7.63□□□□□ -1.19
PTPN1-201ENST00000371621 A8MWP4 228 aa7.62□□□□□ -1.19
PTPN1-201ENST00000371621 K7ERS5 55 aa7.62□□□□□ -1.19
PTPN1-201ENST00000371621 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
PTPN1-201ENST00000371621 NIPBLQ6KC79 2804 aaeCLIP7.62□□□□□ -1.19
PTPN1-201ENST00000371621 OXLD1Q5BKU9 147 aa7.6□□□□□ -1.19
PTPN1-201ENST00000371621 IGKV2D-30A0A075B6S6 120 aa7.6□□□□□ -1.19
PTPN1-201ENST00000371621 IGKV2-30P06310 120 aa7.6□□□□□ -1.19
PTPN1-201ENST00000371621 MIR22HGQ0VDD5 57 aa7.6□□□□□ -1.19
PTPN1-201ENST00000371621 TP53AIP1Q9HCN2 124 aa7.6□□□□□ -1.19
PTPN1-201ENST00000371621 SETXQ7Z333 2677 aaKnown RBP7.59□□□□□ -1.19
PTPN1-201ENST00000371621 UQCR11O14957 56 aa7.59□□□□□ -1.19
PTPN1-201ENST00000371621 ADM2Q7Z4H4 148 aa7.59□□□□□ -1.19
PTPN1-201ENST00000371621 CIRBP-AS1Q8TBR5 109 aa7.58□□□□□ -1.2
PTPN1-201ENST00000371621 PHF5AQ7RTV0 110 aaKnown RBP7.57□□□□□ -1.2
PTPN1-201ENST00000371621 SMR3AQ99954 134 aa7.57□□□□□ -1.2
PTPN1-201ENST00000371621 ITPR2Q14571 2701 aa7.57□□□□□ -1.2
PTPN1-201ENST00000371621 IGLV1-50A0A075B6I6 118 aa7.57□□□□□ -1.2
PTPN1-201ENST00000371621 C15orf56Q8N910 161 aa7.56□□□□□ -1.2
PTPN1-201ENST00000371621 Q8NAQ8 132 aa7.56□□□□□ -1.2
PTPN1-201ENST00000371621 CSAG1Q6PB30 78 aa7.56□□□□□ -1.2
PTPN1-201ENST00000371621 PRR34Q9NV39 138 aa7.56□□□□□ -1.2
PTPN1-201ENST00000371621 SSBP3-AS1Q7Z2R9 100 aa7.55□□□□□ -1.2
PTPN1-201ENST00000371621 C9orf163Q8N9P6 203 aa7.55□□□□□ -1.2
PTPN1-201ENST00000371621 CHTF8P0CG12 524 aa7.54□□□□□ -1.2
PTPN1-201ENST00000371621 C19orf73Q9NVV2 129 aa7.53□□□□□ -1.2
PTPN1-201ENST00000371621 IGLV7-46A0A075B6I9 117 aa7.53□□□□□ -1.2
PTPN1-201ENST00000371621 A6NN06 94 aa7.52□□□□□ -1.21
PTPN1-201ENST00000371621 C1orf134Q5TEV5 83 aa7.52□□□□□ -1.21
PTPN1-201ENST00000371621 SPINT4Q6UDR6 99 aa7.52□□□□□ -1.21
PTPN1-201ENST00000371621 INAFM1C9JVW0 142 aa7.51□□□□□ -1.21
PTPN1-201ENST00000371621 SPRR4Q96PI1 79 aa7.51□□□□□ -1.21
PTPN1-201ENST00000371621 LINC01558Q9Y6Z2 57 aa7.51□□□□□ -1.21
PTPN1-201ENST00000371621 ZCCHC13Q8WW36 166 aaKnown RBP7.51□□□□□ -1.21
PTPN1-201ENST00000371621 NBPF19A0A087WUL8 3843 aa7.51□□□□□ -1.21
PTPN1-201ENST00000371621 MRPL34Q9BQ48 92 aaKnown RBP7.49□□□□□ -1.21
PTPN1-201ENST00000371621 CNBPP62633 177 aaKnown RBP7.48□□□□□ -1.21
PTPN1-201ENST00000371621 LINC01556Q5JQF7 62 aa7.48□□□□□ -1.21
PTPN1-201ENST00000371621 C8orf17Q9NRJ1 99 aa7.48□□□□□ -1.21
PTPN1-201ENST00000371621 HRES1P13985 223 aa7.48□□□□□ -1.21
PTPN1-201ENST00000371621 C14orf177Q52M58 125 aa7.48□□□□□ -1.21
PTPN1-201ENST00000371621 RTL8CO15255 209 aa7.47□□□□□ -1.21
PTPN1-201ENST00000371621 CRIPTQ9P021 101 aa7.47□□□□□ -1.21
PTPN1-201ENST00000371621 STAB2Q8WWQ8 2551 aa7.46□□□□□ -1.22
PTPN1-201ENST00000371621 CASC10Q5T4H9 136 aa7.45□□□□□ -1.22
PTPN1-201ENST00000371621 ZNF469Q96JG9 3925 aaPredicted RBP7.45□□□□□ -1.22
PTPN1-201ENST00000371621 ANAPC11Q9NYG5 84 aa7.43□□□□□ -1.22
PTPN1-201ENST00000371621 J3QKU1 62 aa7.39□□□□□ -1.23
PTPN1-201ENST00000371621 TENM4Q6N022 2769 aa7.38□□□□□ -1.23
PTPN1-201ENST00000371621 A0A1B0GVX0 72 aa7.37□□□□□ -1.23
PTPN1-201ENST00000371621 MMP24-AS1A0A0U1RRL7 71 aa7.36□□□□□ -1.23
PTPN1-201ENST00000371621 K7EIL1 84 aa7.35□□□□□ -1.23
PTPN1-201ENST00000371621 LCE6AA0A183 80 aa7.33□□□□□ -1.24
PTPN1-201ENST00000371621 TNP2Q05952 138 aa7.32□□□□□ -1.24
PTPN1-201ENST00000371621 SPACA4Q8TDM5 124 aa7.3□□□□□ -1.24
PTPN1-201ENST00000371621 PDZD2O15018 2839 aa7.3□□□□□ -1.24
PTPN1-201ENST00000371621 KRTAP29-1A8MX34 341 aaPredicted RBP7.3□□□□□ -1.24
PTPN1-201ENST00000371621 H3BNG1 76 aa7.3□□□□□ -1.24
PTPN1-201ENST00000371621 LINC00472Q9H8W2 130 aa7.29□□□□□ -1.24
PTPN1-201ENST00000371621 VWFP04275 2813 aa7.29□□□□□ -1.24
PTPN1-201ENST00000371621 DNAH10OSP0CZ25 163 aa7.28□□□□□ -1.24
PTPN1-201ENST00000371621 Q8N1X5 172 aa7.28□□□□□ -1.24
PTPN1-201ENST00000371621 FAM229AH3BQW9 127 aa7.27□□□□□ -1.25
PTPN1-201ENST00000371621 TLX1NBP0CAT3 122 aa7.26□□□□□ -1.25
PTPN1-201ENST00000371621 PLA2G2DQ9UNK4 145 aa7.26□□□□□ -1.25
PTPN1-201ENST00000371621 AKAP9Q99996 3911 aa7.26□□□□□ -1.25
PTPN1-201ENST00000371621 IGLV5-37A0A075B6J1 123 aa7.25□□□□□ -1.25
PTPN1-201ENST00000371621 PLA2G1BP04054 148 aaKnown RBP7.25□□□□□ -1.25
PTPN1-201ENST00000371621 OTOGQ6ZRI0 2925 aa7.25□□□□□ -1.25
PTPN1-201ENST00000371621 SPRR1AP35321 89 aa7.25□□□□□ -1.25
PTPN1-201ENST00000371621 KRTAP10-3P60369 221 aa7.24□□□□□ -1.25
PTPN1-201ENST00000371621 KRTAP1-3Q8IUG1 177 aa7.24□□□□□ -1.25
PTPN1-201ENST00000371621 TENM1Q9UKZ4 2725 aa7.22□□□□□ -1.25
PTPN1-201ENST00000371621 Q6ZR54 194 aa7.2□□□□□ -1.26
PTPN1-201ENST00000371621 KRTAP4-16G5E9R7 235 aaPredicted RBP7.18□□□□□ -1.26
PTPN1-201ENST00000371621 A0A0D9SG42 100 aa7.18□□□□□ -1.26
PTPN1-201ENST00000371621 Q96NJ1 140 aa7.17□□□□□ -1.26
PTPN1-201ENST00000371621 A0A087X002 238 aa7.17□□□□□ -1.26
PTPN1-201ENST00000371621 NOTCH2NLQ7Z3S9 236 aa7.17□□□□□ -1.26
PTPN1-201ENST00000371621 KRTAP26-1Q6PEX3 210 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms