RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 VAMP8Q9BV40 100 aa10.46□□□□□ -0.73
CKS1B-203ENST00000368439 Q6ZQY7 126 aa10.45□□□□□ -0.74
CKS1B-203ENST00000368439 XP32Q5T750 250 aa10.44□□□□□ -0.74
CKS1B-203ENST00000368439 BVES-AS1Q5T3Y7 98 aa10.42□□□□□ -0.74
CKS1B-203ENST00000368439 A0A0B4J2C4 111 aa10.4□□□□□ -0.74
CKS1B-203ENST00000368439 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.4□□□□□ -0.74
CKS1B-203ENST00000368439 KRTAP4-1Q9BYQ7 146 aa10.4□□□□□ -0.74
CKS1B-203ENST00000368439 IGLV8-61A0A075B6I0 122 aa10.39□□□□□ -0.75
CKS1B-203ENST00000368439 SEC61BP60468 96 aaKnown RBP10.39□□□□□ -0.75
CKS1B-203ENST00000368439 LCE2AQ5TA79 106 aaPredicted RBP10.39□□□□□ -0.75
CKS1B-203ENST00000368439 PYY3Q5JQD4 70 aa10.38□□□□□ -0.75
CKS1B-203ENST00000368439 C1orf195Q5TG92 126 aa10.38□□□□□ -0.75
CKS1B-203ENST00000368439 RAB37Q96AX2 223 aa10.38□□□□□ -0.75
CKS1B-203ENST00000368439 F8WEM9 126 aa10.37□□□□□ -0.75
CKS1B-203ENST00000368439 CEND1Q8N111 149 aa10.37□□□□□ -0.75
CKS1B-203ENST00000368439 PPDPFLQ8WWR9 84 aa10.35□□□□□ -0.75
CKS1B-203ENST00000368439 OCIAD2Q56VL3 154 aa10.34□□□□□ -0.75
CKS1B-203ENST00000368439 C9orf92A6NGG3 77 aa10.33□□□□□ -0.76
CKS1B-203ENST00000368439 FXYD2P54710 66 aa10.33□□□□□ -0.76
CKS1B-203ENST00000368439 Q6JHZ5 121 aa10.33□□□□□ -0.76
CKS1B-203ENST00000368439 IGFL1Q6UW32 110 aa10.33□□□□□ -0.76
CKS1B-203ENST00000368439 FAM218AQ96MZ4 157 aa10.33□□□□□ -0.76
CKS1B-203ENST00000368439 H0YGX0 51 aa10.31□□□□□ -0.76
CKS1B-203ENST00000368439 CLEC2BQ92478 149 aa10.31□□□□□ -0.76
CKS1B-203ENST00000368439 PRO1854Q9UHT4 67 aa10.3□□□□□ -0.76
CKS1B-203ENST00000368439 TCL1BO95988 128 aa10.29□□□□□ -0.76
CKS1B-203ENST00000368439 TRBV7-7A0A0K0K1E9 115 aa10.28□□□□□ -0.76
CKS1B-203ENST00000368439 TMEM238LA0A1B0GVL6 79 aa10.28□□□□□ -0.76
CKS1B-203ENST00000368439 A6NJY4 79 aa10.28□□□□□ -0.76
CKS1B-203ENST00000368439 SNHG12Q9BXW3 62 aa10.28□□□□□ -0.76
CKS1B-203ENST00000368439 TMA7Q9Y2S6 64 aaKnown RBP10.28□□□□□ -0.76
CKS1B-203ENST00000368439 H3BUT2 72 aa10.25□□□□□ -0.77
CKS1B-203ENST00000368439 HSD52Q0P140 79 aa10.24□□□□□ -0.77
CKS1B-203ENST00000368439 A0A1B0GX51 115 aa10.23□□□□□ -0.77
CKS1B-203ENST00000368439 TRIAP1O43715 76 aa10.23□□□□□ -0.77
CKS1B-203ENST00000368439 PCOTHQ58A44 107 aa10.23□□□□□ -0.77
CKS1B-203ENST00000368439 SNCGO76070 127 aa10.22□□□□□ -0.77
CKS1B-203ENST00000368439 NDUFV3P56181 108 aaKnown RBP10.2□□□□□ -0.78
CKS1B-203ENST00000368439 K7ERJ3 54 aa10.19□□□□□ -0.78
CKS1B-203ENST00000368439 Q6Q795 121 aa10.19□□□□□ -0.78
CKS1B-203ENST00000368439 UQCR10Q9UDW1 63 aa10.18□□□□□ -0.78
CKS1B-203ENST00000368439 RPL37P61927 97 aaKnown RBP10.15□□□□□ -0.78
CKS1B-203ENST00000368439 KRTAP19-2Q3LHN2 52 aa10.14□□□□□ -0.79
CKS1B-203ENST00000368439 H3BMG7 143 aa10.13□□□□□ -0.79
CKS1B-203ENST00000368439 GHRHP01286 108 aa10.13□□□□□ -0.79
CKS1B-203ENST00000368439 LCE2CQ5TA81 110 aa10.13□□□□□ -0.79
CKS1B-203ENST00000368439 TEN1Q86WV5 123 aa10.13□□□□□ -0.79
CKS1B-203ENST00000368439 FABP2P12104 132 aa10.12□□□□□ -0.79
CKS1B-203ENST00000368439 LST1O00453 97 aa10.11□□□□□ -0.79
CKS1B-203ENST00000368439 PSMB2P49721 201 aa10.1□□□□□ -0.79
CKS1B-203ENST00000368439 SS18L2Q9UHA2 77 aa10.08□□□□□ -0.8
CKS1B-203ENST00000368439 A0A1W2PNM2 257 aa10.07□□□□□ -0.8
CKS1B-203ENST00000368439 ORMDL1Q9P0S3 153 aa10.07□□□□□ -0.8
CKS1B-203ENST00000368439 A0A087WSZ3 146 aa10.06□□□□□ -0.8
CKS1B-203ENST00000368439 DNAL4O96015 105 aa10.06□□□□□ -0.8
CKS1B-203ENST00000368439 COX6CP09669 75 aa10.06□□□□□ -0.8
CKS1B-203ENST00000368439 Q96NJ1 140 aa10.05□□□□□ -0.8
CKS1B-203ENST00000368439 H3BQ85 93 aa10.04□□□□□ -0.8
CKS1B-203ENST00000368439 OBSCN-AS1Q96MR7 158 aa10.04□□□□□ -0.8
CKS1B-203ENST00000368439 KRTAP9-2Q9BYQ4 174 aa10.03□□□□□ -0.8
CKS1B-203ENST00000368439 TMEM256-PLSCR3K7ERE1 68 aa10.02□□□□□ -0.81
CKS1B-203ENST00000368439 TRACP01848 142 aa10□□□□□ -0.81
CKS1B-203ENST00000368439 Q75L30 129 aa10□□□□□ -0.81
CKS1B-203ENST00000368439 ANKRD29Q8N6D5 301 aa10□□□□□ -0.81
CKS1B-203ENST00000368439 A0A1B0GV72 72 aa9.99□□□□□ -0.81
CKS1B-203ENST00000368439 TRBV7-4A0A0J9YYF1 115 aa9.98□□□□□ -0.81
CKS1B-203ENST00000368439 UBE2V1Q13404 147 aa9.98□□□□□ -0.81
CKS1B-203ENST00000368439 MT1HP80294 61 aa9.97□□□□□ -0.81
CKS1B-203ENST00000368439 SCGB1C2P0DMR2 95 aa9.95□□□□□ -0.82
CKS1B-203ENST00000368439 SMIM6P0DI80 62 aa9.93□□□□□ -0.82
CKS1B-203ENST00000368439 C20orf166-AS1Q96NR2 134 aa9.93□□□□□ -0.82
CKS1B-203ENST00000368439 A8MUU9 505 aa9.91□□□□□ -0.82
CKS1B-203ENST00000368439 CCKP06307 115 aa9.91□□□□□ -0.82
CKS1B-203ENST00000368439 ATP11AUNQ6ZP68 121 aa9.91□□□□□ -0.82
CKS1B-203ENST00000368439 M0R143 59 aa9.9□□□□□ -0.82
CKS1B-203ENST00000368439 FLGP20930 4061 aaPredicted RBP9.9□□□□□ -0.82
CKS1B-203ENST00000368439 LINC00472Q9H8W2 130 aa9.89□□□□□ -0.83
CKS1B-203ENST00000368439 DSCR10P59022 87 aa9.88□□□□□ -0.83
CKS1B-203ENST00000368439 SIGMAR1Q99720 223 aa9.88□□□□□ -0.83
CKS1B-203ENST00000368439 BAALC-AS2P0C853 105 aa9.87□□□□□ -0.83
CKS1B-203ENST00000368439 NAA38Q9BRA0 125 aaKnown RBP9.87□□□□□ -0.83
CKS1B-203ENST00000368439 IGKV4-1P06312 121 aa9.86□□□□□ -0.83
CKS1B-203ENST00000368439 RBM3P98179 157 aaKnown RBP9.86□□□□□ -0.83
CKS1B-203ENST00000368439 KRTAP16-1A8MUX0 517 aa9.84□□□□□ -0.83
CKS1B-203ENST00000368439 DEFB116Q30KQ4 102 aa9.84□□□□□ -0.83
CKS1B-203ENST00000368439 NOTCH2NLQ7Z3S9 236 aa9.82□□□□□ -0.84
CKS1B-203ENST00000368439 DSCR8Q96T75 97 aa9.82□□□□□ -0.84
CKS1B-203ENST00000368439 LINC00313P59037 77 aa9.81□□□□□ -0.84
CKS1B-203ENST00000368439 ATXN8Q156A1 80 aa9.81□□□□□ -0.84
CKS1B-203ENST00000368439 VPS25Q9BRG1 176 aa9.8□□□□□ -0.84
CKS1B-203ENST00000368439 COX6B2Q6YFQ2 88 aa9.79□□□□□ -0.84
CKS1B-203ENST00000368439 LOC105371267A0A1B0GV96 52 aa9.78□□□□□ -0.84
CKS1B-203ENST00000368439 C9JAW5 83 aa9.77□□□□□ -0.85
CKS1B-203ENST00000368439 LORP23490 312 aaPredicted RBP9.77□□□□□ -0.85
CKS1B-203ENST00000368439 TSTD3H0UI37 97 aa9.76□□□□□ -0.85
CKS1B-203ENST00000368439 KRTAP10-6P60371 365 aaPredicted RBP9.76□□□□□ -0.85
CKS1B-203ENST00000368439 IGHV6-1A0A0B4J1U7 121 aa9.73□□□□□ -0.85
CKS1B-203ENST00000368439 JMJD7-PLA2G4BH0Y9G9 81 aa9.73□□□□□ -0.85
CKS1B-203ENST00000368439 Q6ZQT0 140 aa9.73□□□□□ -0.85
CKS1B-203ENST00000368439 LOC110117498A0A087WWA1 95 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms