RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 COL7A1Q02388 2944 aa7.71□□□□□ -1.18
CLIP3-201ENST00000360535 TNP2Q05952 138 aa7.7□□□□□ -1.18
CLIP3-201ENST00000360535 DNAH10Q8IVF4 4471 aa7.7□□□□□ -1.18
CLIP3-201ENST00000360535 PLA2G2DQ9UNK4 145 aa7.7□□□□□ -1.18
CLIP3-201ENST00000360535 UBE2DNLQ8IWF7 75 aa7.69□□□□□ -1.18
CLIP3-201ENST00000360535 V9GYY9 64 aa7.69□□□□□ -1.18
CLIP3-201ENST00000360535 IGFL1Q6UW32 110 aa7.69□□□□□ -1.18
CLIP3-201ENST00000360535 KRTAP1-5Q9BYS1 174 aa7.68□□□□□ -1.18
CLIP3-201ENST00000360535 UBE2AP49459 152 aa7.67□□□□□ -1.18
CLIP3-201ENST00000360535 PHF5AQ7RTV0 110 aaKnown RBP7.67□□□□□ -1.18
CLIP3-201ENST00000360535 CMYA5Q8N3K9 4069 aa7.67□□□□□ -1.18
CLIP3-201ENST00000360535 IGLV5-37A0A075B6J1 123 aa7.67□□□□□ -1.18
CLIP3-201ENST00000360535 ATP5EP56381 51 aaPredicted RBP7.67□□□□□ -1.18
CLIP3-201ENST00000360535 K7EIL1 84 aa7.66□□□□□ -1.18
CLIP3-201ENST00000360535 SPRR4Q96PI1 79 aa7.66□□□□□ -1.18
CLIP3-201ENST00000360535 HCG22E2RYF7 251 aa7.65□□□□□ -1.18
CLIP3-201ENST00000360535 PSPHP1O15172 72 aa7.64□□□□□ -1.19
CLIP3-201ENST00000360535 KRTAP11-1Q8IUC1 163 aa7.63□□□□□ -1.19
CLIP3-201ENST00000360535 C16orf90A8MZG2 172 aa7.61□□□□□ -1.19
CLIP3-201ENST00000360535 LINC00208Q96KT6 92 aa7.6□□□□□ -1.19
CLIP3-201ENST00000360535 HUWE1Q7Z6Z7 4374 aaKnown RBP7.6□□□□□ -1.19
CLIP3-201ENST00000360535 C1orf64Q8NEQ6 169 aa7.59□□□□□ -1.19
CLIP3-201ENST00000360535 A0A1B0GW54 56 aa7.59□□□□□ -1.2
CLIP3-201ENST00000360535 H0Y9J4 135 aa7.58□□□□□ -1.2
CLIP3-201ENST00000360535 MP68P56378 58 aa7.56□□□□□ -1.2
CLIP3-201ENST00000360535 IGLV9-49A0A0B4J1Y8 123 aa7.56□□□□□ -1.2
CLIP3-201ENST00000360535 DNAH9Q9NYC9 4486 aa7.55□□□□□ -1.2
CLIP3-201ENST00000360535 CASC2Q6XLA1 102 aa7.55□□□□□ -1.2
CLIP3-201ENST00000360535 hDV103S1A0JD37 113 aa7.54□□□□□ -1.2
CLIP3-201ENST00000360535 PANO1I0J062 215 aa7.53□□□□□ -1.2
CLIP3-201ENST00000360535 DNAH1Q9P2D7 4330 aa7.52□□□□□ -1.21
CLIP3-201ENST00000360535 H0Y9P7 68 aa7.52□□□□□ -1.21
CLIP3-201ENST00000360535 CNBPP62633 177 aaKnown RBP7.51□□□□□ -1.21
CLIP3-201ENST00000360535 ZCCHC13Q8WW36 166 aaKnown RBP7.51□□□□□ -1.21
CLIP3-201ENST00000360535 B9D2Q9BPU9 175 aa7.51□□□□□ -1.21
CLIP3-201ENST00000360535 DNAH3Q8TD57 4116 aa7.5□□□□□ -1.21
CLIP3-201ENST00000360535 LCE6AA0A183 80 aa7.5□□□□□ -1.21
CLIP3-201ENST00000360535 PMAIP1Q13794 54 aa7.5□□□□□ -1.21
CLIP3-201ENST00000360535 DNAH7Q8WXX0 4024 aa7.49□□□□□ -1.21
CLIP3-201ENST00000360535 PRR15Q8IV56 129 aa7.48□□□□□ -1.21
CLIP3-201ENST00000360535 ANAPC11Q9NYG5 84 aa7.48□□□□□ -1.21
CLIP3-201ENST00000360535 APLNQ9ULZ1 77 aa7.48□□□□□ -1.21
CLIP3-201ENST00000360535 A8MUN3 132 aa7.48□□□□□ -1.21
CLIP3-201ENST00000360535 C14orf177Q52M58 125 aa7.47□□□□□ -1.21
CLIP3-201ENST00000360535 TRAV22A0A0B4J277 110 aa7.47□□□□□ -1.21
CLIP3-201ENST00000360535 NDUFS5O43920 106 aa7.46□□□□□ -1.22
CLIP3-201ENST00000360535 PCOTHQ58A44 107 aa7.46□□□□□ -1.22
CLIP3-201ENST00000360535 C9orf163Q8N9P6 203 aa7.46□□□□□ -1.22
CLIP3-201ENST00000360535 IGLV8-61A0A075B6I0 122 aa7.46□□□□□ -1.22
CLIP3-201ENST00000360535 A8MU10 97 aa7.46□□□□□ -1.22
CLIP3-201ENST00000360535 A8MWP4 228 aa7.45□□□□□ -1.22
CLIP3-201ENST00000360535 SPTSSBQ8NFR3 76 aa7.45□□□□□ -1.22
CLIP3-201ENST00000360535 NDUFB1O75438 58 aa7.45□□□□□ -1.22
CLIP3-201ENST00000360535 MDFIQ99750 246 aa7.45□□□□□ -1.22
CLIP3-201ENST00000360535 KRTAP29-1A8MX34 341 aaPredicted RBP7.44□□□□□ -1.22
CLIP3-201ENST00000360535 LINC00472Q9H8W2 130 aa7.44□□□□□ -1.22
CLIP3-201ENST00000360535 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.44□□□□□ -1.22
CLIP3-201ENST00000360535 NBDYA0A0U1RRE5 68 aa7.43□□□□□ -1.22
CLIP3-201ENST00000360535 TGP01266 2768 aa7.42□□□□□ -1.22
CLIP3-201ENST00000360535 IGHV6-1A0A0B4J1U7 121 aa7.41□□□□□ -1.22
CLIP3-201ENST00000360535 CHKB-CPT1BH3BT56 60 aa7.41□□□□□ -1.22
CLIP3-201ENST00000360535 Q1T7F1 81 aa7.4□□□□□ -1.23
CLIP3-201ENST00000360535 MOBPQ13875 183 aa7.39□□□□□ -1.23
CLIP3-201ENST00000360535 SPINK6Q6UWN8 80 aa7.39□□□□□ -1.23
CLIP3-201ENST00000360535 CYP4F30PQ9H0H9 118 aa7.39□□□□□ -1.23
CLIP3-201ENST00000360535 SPRR1BP22528 89 aa7.39□□□□□ -1.23
CLIP3-201ENST00000360535 MMP24-AS1A0A0U1RRL7 71 aa7.38□□□□□ -1.23
CLIP3-201ENST00000360535 PLECQ15149 4684 aaKnown RBP7.38□□□□□ -1.23
CLIP3-201ENST00000360535 PRR15LQ9BU68 103 aa7.37□□□□□ -1.23
CLIP3-201ENST00000360535 CDK2AP2O75956 126 aa7.36□□□□□ -1.23
CLIP3-201ENST00000360535 PSORS1C2Q9UIG4 136 aa7.33□□□□□ -1.24
CLIP3-201ENST00000360535 A6NED7 52 aa7.33□□□□□ -1.24
CLIP3-201ENST00000360535 Q6ZRN7 208 aaPredicted RBP7.32□□□□□ -1.24
CLIP3-201ENST00000360535 A0A087X002 238 aa7.32□□□□□ -1.24
CLIP3-201ENST00000360535 NOTCH2NLQ7Z3S9 236 aa7.32□□□□□ -1.24
CLIP3-201ENST00000360535 KRTAP13-1Q8IUC0 172 aa7.32□□□□□ -1.24
CLIP3-201ENST00000360535 SPACA4Q8TDM5 124 aa7.32□□□□□ -1.24
CLIP3-201ENST00000360535 C8orf17Q9NRJ1 99 aa7.31□□□□□ -1.24
CLIP3-201ENST00000360535 Q5VV11 94 aa7.31□□□□□ -1.24
CLIP3-201ENST00000360535 COA5Q86WW8 74 aa7.31□□□□□ -1.24
CLIP3-201ENST00000360535 Q96NJ1 140 aa7.31□□□□□ -1.24
CLIP3-201ENST00000360535 FRAS1Q86XX4 4008 aa7.31□□□□□ -1.24
CLIP3-201ENST00000360535 A0A087WTM6 91 aa7.3□□□□□ -1.24
CLIP3-201ENST00000360535 RTL8CO15255 209 aa7.3□□□□□ -1.24
CLIP3-201ENST00000360535 NUPR2A6NF83 97 aa7.29□□□□□ -1.24
CLIP3-201ENST00000360535 H3BPC8 53 aa7.29□□□□□ -1.24
CLIP3-201ENST00000360535 CIRBP-AS1Q8TBR5 109 aa7.29□□□□□ -1.24
CLIP3-201ENST00000360535 CD164Q04900 197 aa7.29□□□□□ -1.24
CLIP3-201ENST00000360535 Q8N9P0 234 aaPredicted RBP7.29□□□□□ -1.24
CLIP3-201ENST00000360535 SPAG11AQ6PDA7 123 aa7.28□□□□□ -1.24
CLIP3-201ENST00000360535 SPANXA2-OT1Q8N9U9 137 aa7.28□□□□□ -1.24
CLIP3-201ENST00000360535 FBN3Q75N90 2809 aa7.28□□□□□ -1.24
CLIP3-201ENST00000360535 DNHD1Q96M86 4753 aa7.26□□□□□ -1.25
CLIP3-201ENST00000360535 A0A1B0GVX0 72 aa7.26□□□□□ -1.25
CLIP3-201ENST00000360535 WWC2-AS2Q96NR7 200 aa7.26□□□□□ -1.25
CLIP3-201ENST00000360535 RETNLBQ9BQ08 111 aa7.26□□□□□ -1.25
CLIP3-201ENST00000360535 MEGF8Q7Z7M0 2845 aa7.25□□□□□ -1.25
CLIP3-201ENST00000360535 STARD9Q9P2P6 4700 aa7.25□□□□□ -1.25
CLIP3-201ENST00000360535 IGLV5-52A0A0A0MRZ9 124 aa7.25□□□□□ -1.25
CLIP3-201ENST00000360535 KMT2AQ03164 3969 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms