RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 Q8N377 158 aa12.04□□□□□ -0.48
CLN3-205ENST00000359984 HSPG2P98160 4391 aa12.04□□□□□ -0.48
CLN3-205ENST00000359984 RYR1P21817 5038 aa12.04□□□□□ -0.48
CLN3-205ENST00000359984 KRTAP10-4P60372 401 aaPredicted RBP12.04□□□□□ -0.48
CLN3-205ENST00000359984 C14orf132Q9NPU4 83 aa12.03□□□□□ -0.48
CLN3-205ENST00000359984 SS18L2Q9UHA2 77 aa12.02□□□□□ -0.48
CLN3-205ENST00000359984 H3BQ85 93 aa12.02□□□□□ -0.49
CLN3-205ENST00000359984 GHRHP01286 108 aa12.02□□□□□ -0.49
CLN3-205ENST00000359984 JMJD7-PLA2G4BH0Y9G9 81 aa12□□□□□ -0.49
CLN3-205ENST00000359984 GAGE2AQ6NT46 116 aa12□□□□□ -0.49
CLN3-205ENST00000359984 SPRR4Q96PI1 79 aa12□□□□□ -0.49
CLN3-205ENST00000359984 KIAA1109Q2LD37 5005 aa12□□□□□ -0.49
CLN3-205ENST00000359984 FAM229AH3BQW9 127 aa12□□□□□ -0.49
CLN3-205ENST00000359984 SPRR1BP22528 89 aa11.97□□□□□ -0.49
CLN3-205ENST00000359984 ZNF706Q9Y5V0 76 aaPredicted RBP11.97□□□□□ -0.49
CLN3-205ENST00000359984 PLA2G1BP04054 148 aaKnown RBP11.96□□□□□ -0.49
CLN3-205ENST00000359984 C3orf22Q8N5N4 141 aa11.96□□□□□ -0.49
CLN3-205ENST00000359984 KRTAP17-1Q9BYP8 105 aa11.96□□□□□ -0.49
CLN3-205ENST00000359984 SMIM29Q86T20 159 aa11.95□□□□□ -0.5
CLN3-205ENST00000359984 NDUFV3P56181 108 aaKnown RBP11.95□□□□□ -0.5
CLN3-205ENST00000359984 SPINK6Q6UWN8 80 aa11.95□□□□□ -0.5
CLN3-205ENST00000359984 LINC00483Q53H64 154 aa11.94□□□□□ -0.5
CLN3-205ENST00000359984 Q5VSD8 79 aa11.94□□□□□ -0.5
CLN3-205ENST00000359984 LAMTOR3Q9UHA4 124 aa11.94□□□□□ -0.5
CLN3-205ENST00000359984 CCKP06307 115 aa11.93□□□□□ -0.5
CLN3-205ENST00000359984 ANAPC11Q9NYG5 84 aa11.93□□□□□ -0.5
CLN3-205ENST00000359984 Q6Q795 121 aa11.92□□□□□ -0.5
CLN3-205ENST00000359984 LINC00643Q86TS7 51 aa11.91□□□□□ -0.5
CLN3-205ENST00000359984 Q8N1X5 172 aa11.89□□□□□ -0.51
CLN3-205ENST00000359984 ANAPC13Q9BS18 74 aa11.89□□□□□ -0.51
CLN3-205ENST00000359984 TRBV7-7A0A0K0K1E9 115 aa11.89□□□□□ -0.51
CLN3-205ENST00000359984 RBM3P98179 157 aaKnown RBP11.89□□□□□ -0.51
CLN3-205ENST00000359984 LINC00846Q9NV44 126 aa11.88□□□□□ -0.51
CLN3-205ENST00000359984 LOC110117498A0A087WWA1 95 aa11.87□□□□□ -0.51
CLN3-205ENST00000359984 KRTAP1-4P0C5Y4 121 aa11.87□□□□□ -0.51
CLN3-205ENST00000359984 Q6ZQT0 140 aa11.87□□□□□ -0.51
CLN3-205ENST00000359984 SMIM20Q8N5G0 67 aa11.87□□□□□ -0.51
CLN3-205ENST00000359984 F8WEM9 126 aa11.85□□□□□ -0.51
CLN3-205ENST00000359984 BIRC6Q9NR09 4857 aa11.83□□□□□ -0.52
CLN3-205ENST00000359984 IGLV9-49A0A0B4J1Y8 123 aa11.83□□□□□ -0.52
CLN3-205ENST00000359984 IMUPQ9GZP8 106 aa11.83□□□□□ -0.52
CLN3-205ENST00000359984 TRBV7-4A0A0J9YYF1 115 aa11.81□□□□□ -0.52
CLN3-205ENST00000359984 C5orf47Q569G3 176 aa11.81□□□□□ -0.52
CLN3-205ENST00000359984 IGLV8-61A0A075B6I0 122 aa11.8□□□□□ -0.52
CLN3-205ENST00000359984 FAM229BQ4G0N7 80 aa11.8□□□□□ -0.52
CLN3-205ENST00000359984 A0A087X002 238 aa11.8□□□□□ -0.52
CLN3-205ENST00000359984 PDE6GP18545 87 aa11.8□□□□□ -0.52
CLN3-205ENST00000359984 DSCR8Q96T75 97 aa11.8□□□□□ -0.52
CLN3-205ENST00000359984 PKHD1L1Q86WI1 4243 aa11.79□□□□□ -0.52
CLN3-205ENST00000359984 C9orf153Q5TBE3 101 aa11.78□□□□□ -0.52
CLN3-205ENST00000359984 Q6JHZ5 121 aa11.78□□□□□ -0.52
CLN3-205ENST00000359984 MOBPQ13875 183 aa11.77□□□□□ -0.53
CLN3-205ENST00000359984 KRTAP13-2Q52LG2 175 aa11.76□□□□□ -0.53
CLN3-205ENST00000359984 A0A0G2JQZ4 141 aa11.76□□□□□ -0.53
CLN3-205ENST00000359984 CRYGAP11844 174 aa11.76□□□□□ -0.53
CLN3-205ENST00000359984 IGFL1Q6UW32 110 aa11.75□□□□□ -0.53
CLN3-205ENST00000359984 Q8NBF4 154 aa11.74□□□□□ -0.53
CLN3-205ENST00000359984 PRR26Q8N8Z3 221 aa11.7□□□□□ -0.54
CLN3-205ENST00000359984 KRTAP4-5Q9BYR2 181 aa11.7□□□□□ -0.54
CLN3-205ENST00000359984 IGKV3D-7A0A0C4DH55 119 aa11.69□□□□□ -0.54
CLN3-205ENST00000359984 A0A1W2PNM2 257 aa11.69□□□□□ -0.54
CLN3-205ENST00000359984 SSBP3-AS1Q7Z2R9 100 aa11.69□□□□□ -0.54
CLN3-205ENST00000359984 UBL5Q9BZL1 73 aa11.68□□□□□ -0.54
CLN3-205ENST00000359984 CCDC179H3BU77 68 aa11.66□□□□□ -0.54
CLN3-205ENST00000359984 ATP5EP2Q5VTU8 51 aa11.66□□□□□ -0.54
CLN3-205ENST00000359984 TYMSOSQ8TAI1 123 aa11.66□□□□□ -0.54
CLN3-205ENST00000359984 HERC2O95714 4834 aa11.64□□□□□ -0.55
CLN3-205ENST00000359984 FAM236AA0A1B0GUQ0 79 aa11.64□□□□□ -0.55
CLN3-205ENST00000359984 FAM236BA0A1B0GV22 79 aa11.64□□□□□ -0.55
CLN3-205ENST00000359984 Q6ZVQ6 151 aa11.63□□□□□ -0.55
CLN3-205ENST00000359984 HIST1H4AP62805 103 aaKnown RBP11.63□□□□□ -0.55
CLN3-205ENST00000359984 HRCT1Q6UXD1 115 aa11.61□□□□□ -0.55
CLN3-205ENST00000359984 FLG2Q5D862 2391 aaPredicted RBP11.6□□□□□ -0.55
CLN3-205ENST00000359984 LRP1Q07954 4544 aaKnown RBP11.59□□□□□ -0.55
CLN3-205ENST00000359984 A0A087WVE0 104 aa11.56□□□□□ -0.56
CLN3-205ENST00000359984 KRTAP10-8P60410 259 aa11.55□□□□□ -0.56
CLN3-205ENST00000359984 CD164Q04900 197 aa11.55□□□□□ -0.56
CLN3-205ENST00000359984 FAT3Q8TDW7 4589 aa11.54□□□□□ -0.56
CLN3-205ENST00000359984 A0A1B0GW54 56 aa11.54□□□□□ -0.56
CLN3-205ENST00000359984 A0A087WSZ3 146 aa11.53□□□□□ -0.56
CLN3-205ENST00000359984 CXCL6P80162 114 aa11.53□□□□□ -0.56
CLN3-205ENST00000359984 LINC00304Q8N9R0 145 aa11.52□□□□□ -0.57
CLN3-205ENST00000359984 MYCBP2O75592 4640 aa11.51□□□□□ -0.57
CLN3-205ENST00000359984 C4orf48Q5BLP8 95 aa11.5□□□□□ -0.57
CLN3-205ENST00000359984 RPS28P62857 69 aaKnown RBP11.49□□□□□ -0.57
CLN3-205ENST00000359984 ABCA13Q86UQ4 5058 aa11.48□□□□□ -0.57
CLN3-205ENST00000359984 ATOX1O00244 68 aa11.47□□□□□ -0.57
CLN3-205ENST00000359984 OXTP01178 125 aa11.47□□□□□ -0.57
CLN3-205ENST00000359984 MT1HL1P0DM35 61 aa11.47□□□□□ -0.57
CLN3-205ENST00000359984 J3KT08 172 aa11.46□□□□□ -0.57
CLN3-205ENST00000359984 SPAG11AQ6PDA7 123 aa11.46□□□□□ -0.57
CLN3-205ENST00000359984 TNXBP22105 4242 aa11.46□□□□□ -0.57
CLN3-205ENST00000359984 NREPQ16612 68 aa11.46□□□□□ -0.58
CLN3-205ENST00000359984 SPINK1P00995 79 aa11.45□□□□□ -0.58
CLN3-205ENST00000359984 KRTAP29-1A8MX34 341 aaPredicted RBP11.4□□□□□ -0.58
CLN3-205ENST00000359984 Q5XG85 94 aa11.4□□□□□ -0.58
CLN3-205ENST00000359984 RPS29P62273 56 aaKnown RBP11.38□□□□□ -0.59
CLN3-205ENST00000359984 LIMD2Q9BT23 127 aa11.38□□□□□ -0.59
CLN3-205ENST00000359984 COX7CP15954 63 aa11.38□□□□□ -0.59
CLN3-205ENST00000359984 UQCRQO14949 82 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms