RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ZNF575Q86XF7 245 aa7.73□□□□□ -1.17
COL9A1-202ENST00000357250 Q8N377 158 aa7.72□□□□□ -1.17
COL9A1-202ENST00000357250 C9orf163Q8N9P6 203 aa7.72□□□□□ -1.17
COL9A1-202ENST00000357250 CR1P17927 2039 aa7.72□□□□□ -1.17
COL9A1-202ENST00000357250 ATP11AUNQ6ZP68 121 aa7.71□□□□□ -1.17
COL9A1-202ENST00000357250 CELSR2Q9HCU4 2923 aa7.71□□□□□ -1.17
COL9A1-202ENST00000357250 KRTAP10-11P60412 298 aa7.71□□□□□ -1.17
COL9A1-202ENST00000357250 LINC01600Q96MT4 127 aa7.71□□□□□ -1.17
COL9A1-202ENST00000357250 ZNF861PO60384 105 aa7.71□□□□□ -1.18
COL9A1-202ENST00000357250 C8orf17Q9NRJ1 99 aa7.71□□□□□ -1.18
COL9A1-202ENST00000357250 C9orf129Q5T035 196 aaKnown RBP7.7□□□□□ -1.18
COL9A1-202ENST00000357250 K7EIL1 84 aa7.7□□□□□ -1.18
COL9A1-202ENST00000357250 PLA2G1BP04054 148 aaKnown RBP7.7□□□□□ -1.18
COL9A1-202ENST00000357250 COA5Q86WW8 74 aa7.69□□□□□ -1.18
COL9A1-202ENST00000357250 Q96NJ1 140 aa7.69□□□□□ -1.18
COL9A1-202ENST00000357250 A0A1B0GVX0 72 aa7.68□□□□□ -1.18
COL9A1-202ENST00000357250 ZFHX4Q86UP3 3567 aa7.68□□□□□ -1.18
COL9A1-202ENST00000357250 NF1P21359 2839 aa7.68□□□□□ -1.18
COL9A1-202ENST00000357250 CNBPP62633 177 aaKnown RBP7.67□□□□□ -1.18
COL9A1-202ENST00000357250 IGLV5-37A0A075B6J1 123 aa7.66□□□□□ -1.18
COL9A1-202ENST00000357250 APCP25054 2843 aa7.65□□□□□ -1.18
COL9A1-202ENST00000357250 UQCR11O14957 56 aa7.65□□□□□ -1.18
COL9A1-202ENST00000357250 A0A087WTM6 91 aa7.64□□□□□ -1.19
COL9A1-202ENST00000357250 OBSCN-AS1Q96MR7 158 aa7.63□□□□□ -1.19
COL9A1-202ENST00000357250 H7BZZ5 65 aa7.63□□□□□ -1.19
COL9A1-202ENST00000357250 IGLV5-48A0A075B6I7 105 aa7.63□□□□□ -1.19
COL9A1-202ENST00000357250 FBN2P35556 2912 aa7.63□□□□□ -1.19
COL9A1-202ENST00000357250 DCHS2Q6V1P9 2916 aa7.62□□□□□ -1.19
COL9A1-202ENST00000357250 HIVEP1P15822 2718 aa7.62□□□□□ -1.19
COL9A1-202ENST00000357250 HRNRQ86YZ3 2850 aaPredicted RBP7.62□□□□□ -1.19
COL9A1-202ENST00000357250 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
COL9A1-202ENST00000357250 A8MUN3 132 aa7.62□□□□□ -1.19
COL9A1-202ENST00000357250 LINC00304Q8N9R0 145 aa7.6□□□□□ -1.19
COL9A1-202ENST00000357250 A0A1W2PNM2 257 aa7.59□□□□□ -1.19
COL9A1-202ENST00000357250 SPRR4Q96PI1 79 aa7.59□□□□□ -1.19
COL9A1-202ENST00000357250 IGLV7-43P04211 117 aa7.58□□□□□ -1.2
COL9A1-202ENST00000357250 APLNQ9ULZ1 77 aa7.57□□□□□ -1.2
COL9A1-202ENST00000357250 DSCR10P59022 87 aa7.56□□□□□ -1.2
COL9A1-202ENST00000357250 NIPBLQ6KC79 2804 aaeCLIP7.56□□□□□ -1.2
COL9A1-202ENST00000357250 LINC00336Q6ZUF6 198 aa7.55□□□□□ -1.2
COL9A1-202ENST00000357250 A0A1W2PNN7 141 aa7.55□□□□□ -1.2
COL9A1-202ENST00000357250 PSORS1C2Q9UIG4 136 aa7.53□□□□□ -1.2
COL9A1-202ENST00000357250 WIPF1O43516 503 aa7.52□□□□□ -1.2
COL9A1-202ENST00000357250 MIR22HGQ0VDD5 57 aa7.52□□□□□ -1.2
COL9A1-202ENST00000357250 IGLV8-61A0A075B6I0 122 aa7.52□□□□□ -1.21
COL9A1-202ENST00000357250 CD164Q04900 197 aa7.52□□□□□ -1.21
COL9A1-202ENST00000357250 KMT2BQ9UMN6 2715 aaPredicted RBP7.51□□□□□ -1.21
COL9A1-202ENST00000357250 CASC10Q5T4H9 136 aa7.5□□□□□ -1.21
COL9A1-202ENST00000357250 STAB2Q8WWQ8 2551 aa7.49□□□□□ -1.21
COL9A1-202ENST00000357250 OCR1Q9BZK8 76 aa7.48□□□□□ -1.21
COL9A1-202ENST00000357250 FAM104AQ969W3 186 aa7.47□□□□□ -1.21
COL9A1-202ENST00000357250 A0A0G2JQZ4 141 aa7.45□□□□□ -1.22
COL9A1-202ENST00000357250 J3QL48 77 aa7.45□□□□□ -1.22
COL9A1-202ENST00000357250 CRIPTQ9P021 101 aa7.43□□□□□ -1.22
COL9A1-202ENST00000357250 SPINT4Q6UDR6 99 aa7.43□□□□□ -1.22
COL9A1-202ENST00000357250 MXRA5Q9NR99 2828 aa7.42□□□□□ -1.22
COL9A1-202ENST00000357250 TENM4Q6N022 2769 aa7.41□□□□□ -1.22
COL9A1-202ENST00000357250 KTN1-AS1Q86SY8 53 aa7.41□□□□□ -1.22
COL9A1-202ENST00000357250 CDC42SE1Q9NRR8 79 aa7.41□□□□□ -1.22
COL9A1-202ENST00000357250 ANAPC11Q9NYG5 84 aa7.41□□□□□ -1.22
COL9A1-202ENST00000357250 Q1T7F1 81 aa7.4□□□□□ -1.22
COL9A1-202ENST00000357250 FAM229BQ4G0N7 80 aa7.4□□□□□ -1.23
COL9A1-202ENST00000357250 RBM12B-AS1Q9P1G2 102 aa7.4□□□□□ -1.23
COL9A1-202ENST00000357250 SPRR1AP35321 89 aa7.39□□□□□ -1.23
COL9A1-202ENST00000357250 COX6B2Q6YFQ2 88 aa7.38□□□□□ -1.23
COL9A1-202ENST00000357250 C9orf92A6NGG3 77 aa7.38□□□□□ -1.23
COL9A1-202ENST00000357250 IGLV7-46A0A075B6I9 117 aa7.37□□□□□ -1.23
COL9A1-202ENST00000357250 LCA10Q71F78 164 aa7.37□□□□□ -1.23
COL9A1-202ENST00000357250 SMG1Q96Q15 3661 aaKnown RBP7.37□□□□□ -1.23
COL9A1-202ENST00000357250 SPRR1BP22528 89 aa7.35□□□□□ -1.23
COL9A1-202ENST00000357250 CELSR1Q9NYQ6 3014 aa7.33□□□□□ -1.24
COL9A1-202ENST00000357250 CSMD1Q96PZ7 3565 aa7.33□□□□□ -1.24
COL9A1-202ENST00000357250 SMR3BP02814 79 aaPredicted RBP7.33□□□□□ -1.24
COL9A1-202ENST00000357250 PLAC8Q9NZF1 115 aa7.32□□□□□ -1.24
COL9A1-202ENST00000357250 CUBNO60494 3623 aa7.31□□□□□ -1.24
COL9A1-202ENST00000357250 TNP2Q05952 138 aa7.29□□□□□ -1.24
COL9A1-202ENST00000357250 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.29□□□□□ -1.24
COL9A1-202ENST00000357250 SVEP1Q4LDE5 3571 aa7.29□□□□□ -1.24
COL9A1-202ENST00000357250 MMP24-AS1A0A0U1RRL7 71 aa7.28□□□□□ -1.24
COL9A1-202ENST00000357250 Q8N1X5 172 aa7.28□□□□□ -1.24
COL9A1-202ENST00000357250 Q8NDZ9 215 aa7.28□□□□□ -1.24
COL9A1-202ENST00000357250 Q75L30 129 aa7.27□□□□□ -1.25
COL9A1-202ENST00000357250 PRR26Q8N8Z3 221 aa7.27□□□□□ -1.25
COL9A1-202ENST00000357250 HRES1P13985 223 aa7.25□□□□□ -1.25
COL9A1-202ENST00000357250 LINC01558Q9Y6Z2 57 aa7.25□□□□□ -1.25
COL9A1-202ENST00000357250 LINC00472Q9H8W2 130 aa7.23□□□□□ -1.25
COL9A1-202ENST00000357250 ZCCHC13Q8WW36 166 aaKnown RBP7.21□□□□□ -1.26
COL9A1-202ENST00000357250 A0A1B0GU33 70 aa7.2□□□□□ -1.26
COL9A1-202ENST00000357250 Q8N9P0 234 aaPredicted RBP7.2□□□□□ -1.26
COL9A1-202ENST00000357250 KRTAP26-1Q6PEX3 210 aa7.2□□□□□ -1.26
COL9A1-202ENST00000357250 Q6ZSA8 131 aa7.19□□□□□ -1.26
COL9A1-202ENST00000357250 KRTAP1-5Q9BYS1 174 aa7.19□□□□□ -1.26
COL9A1-202ENST00000357250 A0A0D9SG42 100 aa7.16□□□□□ -1.26
COL9A1-202ENST00000357250 FBN1P35555 2871 aaKnown RBP7.14□□□□□ -1.27
COL9A1-202ENST00000357250 TENM1Q9UKZ4 2725 aa7.14□□□□□ -1.27
COL9A1-202ENST00000357250 Q5XG85 94 aa7.14□□□□□ -1.27
COL9A1-202ENST00000357250 DMAC1Q96GE9 116 aa7.13□□□□□ -1.27
COL9A1-202ENST00000357250 CSMD2Q7Z408 3487 aa7.12□□□□□ -1.27
COL9A1-202ENST00000357250 Q5W150 140 aa7.12□□□□□ -1.27
COL9A1-202ENST00000357250 LINC01554Q52M75 96 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms