RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LINC00588Q9Y4M8 146 aa14.19□□□□□ -0.14
TRIM28-202ENST00000341753 PSPHP1O15172 72 aa14.18□□□□□ -0.14
TRIM28-202ENST00000341753 IGFL1Q6UW32 110 aa14.18□□□□□ -0.14
TRIM28-202ENST00000341753 PRLHP81277 87 aa14.17□□□□□ -0.14
TRIM28-202ENST00000341753 C1orf195Q5TG92 126 aa14.17□□□□□ -0.14
TRIM28-202ENST00000341753 REG3GQ6UW15 175 aa14.17□□□□□ -0.14
TRIM28-202ENST00000341753 DNAH1Q9P2D7 4330 aa14.17□□□□□ -0.14
TRIM28-202ENST00000341753 RPL37AP61513 92 aaKnown RBP14.17□□□□□ -0.14
TRIM28-202ENST00000341753 K7EIL1 84 aa14.15□□□□□ -0.14
TRIM28-202ENST00000341753 DNAH10Q8IVF4 4471 aa14.15□□□□□ -0.14
TRIM28-202ENST00000341753 A0A087WSZ3 146 aa14.15□□□□□ -0.14
TRIM28-202ENST00000341753 COL7A1Q02388 2944 aa14.14□□□□□ -0.15
TRIM28-202ENST00000341753 STAB2Q8WWQ8 2551 aa14.14□□□□□ -0.15
TRIM28-202ENST00000341753 SRRM2Q9UQ35 2752 aaKnown RBP14.12□□□□□ -0.15
TRIM28-202ENST00000341753 IGKV2-24A0A0C4DH68 120 aa14.11□□□□□ -0.15
TRIM28-202ENST00000341753 Q1T7F1 81 aa14.09□□□□□ -0.15
TRIM28-202ENST00000341753 LINC00208Q96KT6 92 aa14.07□□□□□ -0.16
TRIM28-202ENST00000341753 TRAV22A0A0B4J277 110 aa14.06□□□□□ -0.16
TRIM28-202ENST00000341753 TENM2Q9NT68 2774 aa14.05□□□□□ -0.16
TRIM28-202ENST00000341753 CSMD3Q7Z407 3707 aa14.04□□□□□ -0.16
TRIM28-202ENST00000341753 CYP4F30PQ9H0H9 118 aa14.03□□□□□ -0.16
TRIM28-202ENST00000341753 A0A096LNI7 61 aa14.03□□□□□ -0.16
TRIM28-202ENST00000341753 MP68P56378 58 aa14.03□□□□□ -0.16
TRIM28-202ENST00000341753 DNAH9Q9NYC9 4486 aa14.02□□□□□ -0.16
TRIM28-202ENST00000341753 A8MUN3 132 aa13.99□□□□□ -0.17
TRIM28-202ENST00000341753 UBE2AP49459 152 aa13.99□□□□□ -0.17
TRIM28-202ENST00000341753 V9GYY9 64 aa13.97□□□□□ -0.17
TRIM28-202ENST00000341753 NDUFB1O75438 58 aa13.97□□□□□ -0.17
TRIM28-202ENST00000341753 H0Y9P7 68 aa13.96□□□□□ -0.18
TRIM28-202ENST00000341753 KRTAP29-1A8MX34 341 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-202ENST00000341753 CASC2Q6XLA1 102 aa13.95□□□□□ -0.18
TRIM28-202ENST00000341753 KRTAP11-1Q8IUC1 163 aa13.95□□□□□ -0.18
TRIM28-202ENST00000341753 B9D2Q9BPU9 175 aa13.95□□□□□ -0.18
TRIM28-202ENST00000341753 KRTAP1-5Q9BYS1 174 aa13.95□□□□□ -0.18
TRIM28-202ENST00000341753 A8MU10 97 aa13.94□□□□□ -0.18
TRIM28-202ENST00000341753 PRR15Q8IV56 129 aa13.94□□□□□ -0.18
TRIM28-202ENST00000341753 DNAH7Q8WXX0 4024 aa13.94□□□□□ -0.18
TRIM28-202ENST00000341753 CNBPP62633 177 aaKnown RBP13.92□□□□□ -0.18
TRIM28-202ENST00000341753 CHTF8P0CG12 524 aa13.92□□□□□ -0.18
TRIM28-202ENST00000341753 IGLV8-61A0A075B6I0 122 aa13.91□□□□□ -0.18
TRIM28-202ENST00000341753 PHF5AQ7RTV0 110 aaKnown RBP13.91□□□□□ -0.18
TRIM28-202ENST00000341753 C16orf90A8MZG2 172 aa13.88□□□□□ -0.19
TRIM28-202ENST00000341753 Q5VV11 94 aa13.84□□□□□ -0.19
TRIM28-202ENST00000341753 MDFIQ99750 246 aa13.84□□□□□ -0.19
TRIM28-202ENST00000341753 PLECQ15149 4684 aaKnown RBP13.83□□□□□ -0.2
TRIM28-202ENST00000341753 H0Y9J4 135 aa13.83□□□□□ -0.2
TRIM28-202ENST00000341753 A8MWP4 228 aa13.83□□□□□ -0.2
TRIM28-202ENST00000341753 LINC00472Q9H8W2 130 aa13.82□□□□□ -0.2
TRIM28-202ENST00000341753 PMAIP1Q13794 54 aa13.79□□□□□ -0.2
TRIM28-202ENST00000341753 UBE2DNLQ8IWF7 75 aa13.79□□□□□ -0.2
TRIM28-202ENST00000341753 SEC61GP60059 68 aa13.78□□□□□ -0.2
TRIM28-202ENST00000341753 Q8N9P0 234 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-202ENST00000341753 SPANXA2-OT1Q8N9U9 137 aa13.77□□□□□ -0.21
TRIM28-202ENST00000341753 CHKB-CPT1BH3BT56 60 aa13.77□□□□□ -0.21
TRIM28-202ENST00000341753 PRR15LQ9BU68 103 aa13.77□□□□□ -0.21
TRIM28-202ENST00000341753 C9orf163Q8N9P6 203 aa13.75□□□□□ -0.21
TRIM28-202ENST00000341753 PCOTHQ58A44 107 aa13.73□□□□□ -0.21
TRIM28-202ENST00000341753 MMP24-AS1A0A0U1RRL7 71 aa13.73□□□□□ -0.21
TRIM28-202ENST00000341753 APLNQ9ULZ1 77 aa13.73□□□□□ -0.21
TRIM28-202ENST00000341753 H3BPC8 53 aa13.72□□□□□ -0.21
TRIM28-202ENST00000341753 SPRR1BP22528 89 aa13.7□□□□□ -0.22
TRIM28-202ENST00000341753 DYNC2H1Q8NCM8 4307 aaKnown RBP13.7□□□□□ -0.22
TRIM28-202ENST00000341753 COA5Q86WW8 74 aa13.69□□□□□ -0.22
TRIM28-202ENST00000341753 IGLV9-49A0A0B4J1Y8 123 aa13.67□□□□□ -0.22
TRIM28-202ENST00000341753 LIMD2Q9BT23 127 aa13.66□□□□□ -0.22
TRIM28-202ENST00000341753 STARD9Q9P2P6 4700 aa13.65□□□□□ -0.22
TRIM28-202ENST00000341753 PRKDCP78527 4128 aaKnown RBP13.65□□□□□ -0.22
TRIM28-202ENST00000341753 PANO1I0J062 215 aa13.65□□□□□ -0.22
TRIM28-202ENST00000341753 SPTSSBQ8NFR3 76 aa13.63□□□□□ -0.23
TRIM28-202ENST00000341753 CD164Q04900 197 aa13.61□□□□□ -0.23
TRIM28-202ENST00000341753 IGLV7-46A0A075B6I9 117 aa13.59□□□□□ -0.23
TRIM28-202ENST00000341753 Q96NJ1 140 aa13.58□□□□□ -0.24
TRIM28-202ENST00000341753 NDUFS5O43920 106 aa13.57□□□□□ -0.24
TRIM28-202ENST00000341753 A6NED7 52 aa13.57□□□□□ -0.24
TRIM28-202ENST00000341753 LCA10Q71F78 164 aa13.56□□□□□ -0.24
TRIM28-202ENST00000341753 IGHV6-1A0A0B4J1U7 121 aa13.54□□□□□ -0.24
TRIM28-202ENST00000341753 SPAG11AQ6PDA7 123 aa13.54□□□□□ -0.24
TRIM28-202ENST00000341753 C14orf177Q52M58 125 aa13.52□□□□□ -0.25
TRIM28-202ENST00000341753 C8orf17Q9NRJ1 99 aa13.52□□□□□ -0.25
TRIM28-202ENST00000341753 NBDYA0A0U1RRE5 68 aa13.51□□□□□ -0.25
TRIM28-202ENST00000341753 KRTAP13-1Q8IUC0 172 aa13.51□□□□□ -0.25
TRIM28-202ENST00000341753 Q75L30 129 aa13.51□□□□□ -0.25
TRIM28-202ENST00000341753 MOBPQ13875 183 aa13.5□□□□□ -0.25
TRIM28-202ENST00000341753 KMT2AQ03164 3969 aa13.5□□□□□ -0.25
TRIM28-202ENST00000341753 DNHD1Q96M86 4753 aa13.49□□□□□ -0.25
TRIM28-202ENST00000341753 VPS13DQ5THJ4 4388 aa13.49□□□□□ -0.25
TRIM28-202ENST00000341753 ANAPC11Q9NYG5 84 aa13.48□□□□□ -0.25
TRIM28-202ENST00000341753 LOC101927531A0A1B0GV80 90 aa13.47□□□□□ -0.25
TRIM28-202ENST00000341753 MEGF8Q7Z7M0 2845 aa13.47□□□□□ -0.25
TRIM28-202ENST00000341753 ASB16-AS1Q495Z4 193 aa13.46□□□□□ -0.25
TRIM28-202ENST00000341753 A0A087X002 238 aa13.46□□□□□ -0.26
TRIM28-202ENST00000341753 NOTCH2NLQ7Z3S9 236 aa13.46□□□□□ -0.26
TRIM28-202ENST00000341753 TP53AIP1Q9HCN2 124 aa13.45□□□□□ -0.26
TRIM28-202ENST00000341753 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-202ENST00000341753 Q6ZRN7 208 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-202ENST00000341753 Q6ZR54 194 aa13.42□□□□□ -0.26
TRIM28-202ENST00000341753 DNAH2Q9P225 4427 aa13.42□□□□□ -0.26
TRIM28-202ENST00000341753 A0A1B0GVX0 72 aa13.41□□□□□ -0.26
TRIM28-202ENST00000341753 NUPR2A6NF83 97 aa13.41□□□□□ -0.26
TRIM28-202ENST00000341753 HRES1P13985 223 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms