RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MAST4O15021 2626 aa7.63□□□□□ -1.19
SDC3-201ENST00000336798 SEC61BP60468 96 aaKnown RBP7.62□□□□□ -1.19
SDC3-201ENST00000336798 UTRNP46939 3433 aa7.61□□□□□ -1.19
SDC3-201ENST00000336798 DNAH12Q6ZR08 3092 aa7.61□□□□□ -1.19
SDC3-201ENST00000336798 KRTAP1-5Q9BYS1 174 aa7.6□□□□□ -1.19
SDC3-201ENST00000336798 KRTAP10-1P60331 282 aa7.6□□□□□ -1.19
SDC3-201ENST00000336798 KRTAP10-2P60368 255 aa7.6□□□□□ -1.19
SDC3-201ENST00000336798 ASB16-AS1Q495Z4 193 aa7.58□□□□□ -1.2
SDC3-201ENST00000336798 ROMO1P60602 79 aa7.57□□□□□ -1.2
SDC3-201ENST00000336798 ADM2Q7Z4H4 148 aa7.56□□□□□ -1.2
SDC3-201ENST00000336798 H1FX-AS1Q4G0G2 97 aa7.56□□□□□ -1.2
SDC3-201ENST00000336798 LINC00472Q9H8W2 130 aa7.56□□□□□ -1.2
SDC3-201ENST00000336798 PRRC2CQ9Y520 2896 aaKnown RBP7.55□□□□□ -1.2
SDC3-201ENST00000336798 PLAC4Q8WY50 150 aa7.55□□□□□ -1.2
SDC3-201ENST00000336798 SPATA8Q6RVD6 105 aa7.54□□□□□ -1.2
SDC3-201ENST00000336798 SPRR1AP35321 89 aa7.54□□□□□ -1.2
SDC3-201ENST00000336798 RPL37P61927 97 aaKnown RBP7.53□□□□□ -1.2
SDC3-201ENST00000336798 CEP350Q5VT06 3117 aa7.52□□□□□ -1.21
SDC3-201ENST00000336798 LCE6AA0A183 80 aa7.51□□□□□ -1.21
SDC3-201ENST00000336798 KRTAP26-1Q6PEX3 210 aa7.51□□□□□ -1.21
SDC3-201ENST00000336798 A8MU10 97 aa7.51□□□□□ -1.21
SDC3-201ENST00000336798 NDUFAF8A1L188 74 aa7.5□□□□□ -1.21
SDC3-201ENST00000336798 KRTAP25-1Q3LHN0 102 aa7.49□□□□□ -1.21
SDC3-201ENST00000336798 C5orf42Q9H799 3197 aa7.48□□□□□ -1.21
SDC3-201ENST00000336798 PANO1I0J062 215 aa7.45□□□□□ -1.22
SDC3-201ENST00000336798 FLNAP21333 2647 aaKnown RBP7.44□□□□□ -1.22
SDC3-201ENST00000336798 SPRR1BP22528 89 aa7.44□□□□□ -1.22
SDC3-201ENST00000336798 Q6ZR54 194 aa7.43□□□□□ -1.22
SDC3-201ENST00000336798 HELZ2Q9BYK8 2649 aaKnown RBP7.42□□□□□ -1.22
SDC3-201ENST00000336798 ITPR3Q14573 2671 aa7.42□□□□□ -1.22
SDC3-201ENST00000336798 FLG2Q5D862 2391 aaPredicted RBP7.4□□□□□ -1.23
SDC3-201ENST00000336798 A0A087X002 238 aa7.39□□□□□ -1.23
SDC3-201ENST00000336798 NOTCH2NLQ7Z3S9 236 aa7.33□□□□□ -1.24
SDC3-201ENST00000336798 SETXQ7Z333 2677 aaKnown RBP7.32□□□□□ -1.24
SDC3-201ENST00000336798 C20orf166-AS1Q96NR2 134 aa7.32□□□□□ -1.24
SDC3-201ENST00000336798 KRTAP21-3Q3LHN1 58 aa7.31□□□□□ -1.24
SDC3-201ENST00000336798 CENPEQ02224 2701 aa7.3□□□□□ -1.24
SDC3-201ENST00000336798 STAB1Q9NY15 2570 aa7.29□□□□□ -1.24
SDC3-201ENST00000336798 CFAP46Q8IYW2 2715 aa7.28□□□□□ -1.24
SDC3-201ENST00000336798 A8MUU9 505 aa7.24□□□□□ -1.25
SDC3-201ENST00000336798 CFAP54Q96N23 3096 aa7.23□□□□□ -1.25
SDC3-201ENST00000336798 KRTAP11-1Q8IUC1 163 aa7.23□□□□□ -1.25
SDC3-201ENST00000336798 TEP1Q99973 2627 aaKnown RBP7.22□□□□□ -1.25
SDC3-201ENST00000336798 KRTAP4-16G5E9R7 235 aaPredicted RBP7.21□□□□□ -1.26
SDC3-201ENST00000336798 AKAP13Q12802 2813 aa7.21□□□□□ -1.26
SDC3-201ENST00000336798 PCNTO95613 3336 aa7.2□□□□□ -1.26
SDC3-201ENST00000336798 KRTAP29-1A8MX34 341 aaPredicted RBP7.19□□□□□ -1.26
SDC3-201ENST00000336798 CHD6Q8TD26 2715 aa7.18□□□□□ -1.26
SDC3-201ENST00000336798 NBEAL1Q6ZS30 2694 aa7.18□□□□□ -1.26
SDC3-201ENST00000336798 TEX15Q9BXT5 2789 aa7.15□□□□□ -1.26
SDC3-201ENST00000336798 A0A0C4DFX4 3053 aa7.15□□□□□ -1.26
SDC3-201ENST00000336798 DMBT1Q9UGM3 2413 aaPredicted RBP7.14□□□□□ -1.27
SDC3-201ENST00000336798 BAHCC1Q9P281 2608 aa7.12□□□□□ -1.27
SDC3-201ENST00000336798 CHD7Q9P2D1 2997 aa7.1□□□□□ -1.27
SDC3-201ENST00000336798 C10orf95Q9H7T3 257 aa7.09□□□□□ -1.27
SDC3-201ENST00000336798 MKI67P46013 3256 aaKnown RBP7.07□□□□□ -1.28
SDC3-201ENST00000336798 KRTAP13-2Q52LG2 175 aa7.07□□□□□ -1.28
SDC3-201ENST00000336798 MGAQ8IWI9 3026 aa7.04□□□□□ -1.28
SDC3-201ENST00000336798 COL6A5A8TX70 2615 aa7.04□□□□□ -1.28
SDC3-201ENST00000336798 KRTAP7-1Q8IUC3 87 aa7.03□□□□□ -1.28
SDC3-201ENST00000336798 Q6ZRN7 208 aaPredicted RBP7.03□□□□□ -1.28
SDC3-201ENST00000336798 A0A1B0GVY2 172 aa7.02□□□□□ -1.29
SDC3-201ENST00000336798 TNP1P09430 55 aa7□□□□□ -1.29
SDC3-201ENST00000336798 STAB2Q8WWQ8 2551 aa6.99□□□□□ -1.29
SDC3-201ENST00000336798 RANBP2P49792 3224 aaKnown RBP6.98□□□□□ -1.29
SDC3-201ENST00000336798 GCN1Q92616 2671 aaKnown RBP6.98□□□□□ -1.29
SDC3-201ENST00000336798 LAMA2P24043 3122 aaKnown RBP6.98□□□□□ -1.29
SDC3-201ENST00000336798 UNC79Q9P2D8 2635 aa6.98□□□□□ -1.29
SDC3-201ENST00000336798 RPS29P62273 56 aaKnown RBP6.97□□□□□ -1.29
SDC3-201ENST00000336798 FREM2Q5SZK8 3169 aa6.96□□□□□ -1.29
SDC3-201ENST00000336798 TRIOO75962 3097 aa6.96□□□□□ -1.29
SDC3-201ENST00000336798 XIRP2A4UGR9 3374 aa6.96□□□□□ -1.3
SDC3-201ENST00000336798 NOTCH1P46531 2555 aa6.95□□□□□ -1.3
SDC3-201ENST00000336798 LAMA3Q16787 3333 aa6.94□□□□□ -1.3
SDC3-201ENST00000336798 KRTAP10-8P60410 259 aa6.93□□□□□ -1.3
SDC3-201ENST00000336798 NBEAL2Q6ZNJ1 2754 aa6.93□□□□□ -1.3
SDC3-201ENST00000336798 BRCA2P51587 3418 aa6.92□□□□□ -1.3
SDC3-201ENST00000336798 WDFY4Q6ZS81 3184 aa6.91□□□□□ -1.3
SDC3-201ENST00000336798 FRYQ5TBA9 3013 aa6.9□□□□□ -1.3
SDC3-201ENST00000336798 CELSR3Q9NYQ7 3312 aa6.89□□□□□ -1.31
SDC3-201ENST00000336798 MAP1AP78559 2803 aaPredicted RBP6.88□□□□□ -1.31
SDC3-201ENST00000336798 KRTAP13-1Q8IUC0 172 aa6.87□□□□□ -1.31
SDC3-201ENST00000336798 ZNF292O60281 2723 aa6.86□□□□□ -1.31
SDC3-201ENST00000336798 PRUNE2Q8WUY3 3088 aa6.84□□□□□ -1.31
SDC3-201ENST00000336798 CHD9Q3L8U1 2897 aa6.82□□□□□ -1.32
SDC3-201ENST00000336798 DSPP15924 2871 aaKnown RBP6.81□□□□□ -1.32
SDC3-201ENST00000336798 HTTP42858 3142 aa6.81□□□□□ -1.32
SDC3-201ENST00000336798 UBR5O95071 2799 aaPredicted RBP6.8□□□□□ -1.32
SDC3-201ENST00000336798 UNC80Q8N2C7 3258 aa6.79□□□□□ -1.32
SDC3-201ENST00000336798 XP32Q5T750 250 aa6.74□□□□□ -1.33
SDC3-201ENST00000336798 CRYBG3Q68DQ2 2970 aa6.73□□□□□ -1.33
SDC3-201ENST00000336798 KRTAP10-10P60014 251 aa6.73□□□□□ -1.33
SDC3-201ENST00000336798 NSD1Q96L73 2696 aaPredicted RBP6.73□□□□□ -1.33
SDC3-201ENST00000336798 IGSF10Q6WRI0 2623 aa6.72□□□□□ -1.33
SDC3-201ENST00000336798 H0YAA0 97 aa6.71□□□□□ -1.34
SDC3-201ENST00000336798 CDH23Q9H251 3354 aa6.7□□□□□ -1.34
SDC3-201ENST00000336798 VPS13AQ96RL7 3174 aa6.7□□□□□ -1.34
SDC3-201ENST00000336798 REV3LO60673 3130 aa6.7□□□□□ -1.34
SDC3-201ENST00000336798 ITPR2Q14571 2701 aa6.7□□□□□ -1.34
SDC3-201ENST00000336798 P0C880 135 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms